Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47052 * 2 1 4 4 C 1.52999 * 109.47080 * 240.00083 * 2 1 3 5 5 O 1.45200 * 109.46791 * 120.00160 * 2 1 3 6 6 C 1.34222 * 117.00171 * 60.00047 * 5 2 1 7 7 O 1.20824 * 120.00410 * 359.97438 * 6 5 2 8 8 C 1.50704 * 119.99764 * 179.97438 * 6 5 2 9 9 N 1.46897 * 109.46951 * 35.61545 * 8 6 5 10 10 C 1.46902 * 111.00189 * 61.32346 * 9 8 6 11 11 C 1.50699 * 109.47205 * 185.74925 * 10 9 8 12 12 O 1.21281 * 119.99813 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00228 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00508 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47292 * 179.97438 * 14 13 11 16 16 H 1.07991 * 119.99888 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99540 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00528 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99868 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46865 * 89.99973 * 19 17 15 21 21 H 1.48502 * 109.47327 * 210.00024 * 19 17 15 22 22 H 1.48500 * 109.46885 * 330.00028 * 19 17 15 23 23 C 1.53000 * 109.47148 * 275.61392 * 8 6 5 24 24 C 1.53001 * 109.46663 * 180.02562 * 23 8 6 25 25 C 1.52998 * 109.47312 * 60.00434 * 24 23 8 26 26 C 1.53000 * 109.46902 * 299.99420 * 25 24 23 27 27 C 1.53001 * 109.47037 * 60.00176 * 26 25 24 28 28 H 1.09001 * 109.46743 * 299.99839 * 1 2 3 29 29 H 1.09000 * 109.47030 * 59.99878 * 1 2 3 30 30 H 1.08999 * 109.46818 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46915 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46834 * 299.99931 * 3 2 1 33 33 H 1.09003 * 109.47084 * 59.99680 * 3 2 1 34 34 H 1.09001 * 109.47014 * 300.00385 * 4 2 1 35 35 H 1.08996 * 109.46979 * 59.99383 * 4 2 1 36 36 H 1.08999 * 109.47254 * 180.02562 * 4 2 1 37 37 H 1.00897 * 111.00610 * 297.36340 * 9 8 6 38 38 H 1.09004 * 109.46610 * 305.74003 * 10 9 8 39 39 H 1.08996 * 109.47718 * 65.74355 * 10 9 8 40 40 H 0.97003 * 119.99503 * 359.97438 * 13 11 10 41 41 H 1.09004 * 109.46698 * 299.99489 * 14 13 11 42 42 H 1.08996 * 109.46854 * 59.99366 * 14 13 11 43 43 H 0.97002 * 120.00357 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.47300 * 300.00125 * 23 8 6 45 45 H 1.08999 * 109.46816 * 60.00727 * 23 8 6 46 46 H 1.08998 * 109.47299 * 300.00046 * 24 23 8 47 47 H 1.09010 * 109.47127 * 179.97438 * 24 23 8 48 48 H 1.08997 * 109.47284 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47255 * 59.99585 * 25 24 23 50 50 H 1.08998 * 109.47300 * 300.00137 * 26 25 24 51 51 H 1.09002 * 109.47149 * 180.02562 * 26 25 24 52 52 H 1.08997 * 109.46957 * 179.97438 * 27 26 25 53 53 H 1.08998 * 109.47107 * 59.99843 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3378 7 8 0.9560 -2.5025 0.5083 8 6 2.1183 -2.7437 2.5436 9 7 2.1608 -1.8536 3.7115 10 6 0.8268 -1.3180 4.0141 11 6 0.9325 -0.3042 5.1241 12 8 2.0126 -0.0531 5.6151 13 7 -0.1733 0.3233 5.5712 14 6 -0.0708 1.3083 6.6506 15 6 -1.4391 1.8588 6.9601 16 1 -2.2990 1.5101 6.4077 17 6 -1.5930 2.8076 7.9485 18 7 -0.5457 3.2327 8.6210 19 14 -3.2890 3.4906 8.3317 20 1 -3.9338 2.6563 9.3773 21 1 -3.1614 4.8867 8.8213 22 1 -4.1198 3.4716 7.1010 23 6 3.5164 -3.3065 2.2801 24 6 3.9880 -4.0941 3.5041 25 6 3.0175 -5.2455 3.7747 26 6 1.6194 -4.6827 4.0382 27 6 1.1476 -3.8950 2.8143 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 2.8271 -1.1085 3.5742 38 1 0.4165 -0.8407 3.1241 39 1 0.1709 -2.1308 4.3256 40 1 -1.0372 0.1226 5.1782 41 1 0.3389 0.8306 7.5407 42 1 0.5857 2.1210 6.3397 43 1 -0.6540 3.8999 9.3166 44 1 3.4848 -3.9669 1.4135 45 1 4.2077 -2.4863 2.0869 46 1 4.0195 -3.4341 4.3709 47 1 4.9839 -4.4956 3.3162 48 1 3.3537 -5.8069 4.6464 49 1 2.9860 -5.9056 2.9079 50 1 1.6508 -4.0226 4.9051 51 1 0.9280 -5.5029 4.2315 52 1 0.1515 -3.4945 3.0019 53 1 1.1162 -4.5551 1.9475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759248679.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -164.111529 kcal Electronic energy + Delta-G solvation = -32077.027820 eV Core-core repulsion = 27946.949151 eV Total energy + Delta-G solvation = -4130.078669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.41035 -40.62660 -39.73413 -37.85302 -36.21333 -35.62548 -34.81166 -34.33887 -31.97853 -31.15737 -29.49783 -28.43696 -28.37073 -26.98825 -25.37159 -24.38468 -23.63482 -22.43737 -21.39877 -20.69898 -19.99673 -19.08847 -18.47357 -17.74454 -17.68390 -17.21564 -17.00322 -16.69804 -16.25931 -16.21928 -15.59169 -15.40225 -15.34081 -15.18917 -14.63784 -14.50201 -14.46797 -14.20160 -13.96283 -13.75234 -13.45486 -13.41180 -13.25497 -13.05387 -13.03279 -12.98655 -12.93333 -12.90633 -12.79346 -12.70281 -12.49079 -12.35554 -12.23344 -11.96773 -11.55153 -11.48816 -11.43854 -11.40372 -11.03308 -10.94856 -10.80239 -10.76539 -9.84625 -9.58697 -8.28937 -6.45389 1.05938 1.42977 1.45087 1.55560 1.56256 1.74180 2.23937 2.44366 3.05976 3.13195 3.40861 3.56733 3.66818 3.73498 3.75246 3.87711 3.89397 4.16105 4.18202 4.30035 4.30712 4.33875 4.48228 4.51194 4.54685 4.62231 4.66049 4.69777 4.73922 4.80012 4.83344 4.85440 5.01609 5.02967 5.06027 5.11117 5.18814 5.21874 5.25367 5.29492 5.34221 5.36612 5.41441 5.47929 5.49632 5.60500 5.69643 5.75000 5.85068 6.11217 6.65125 6.71433 6.89328 7.23494 7.46660 8.83125 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.003230 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.845285 B = 8666.314864 C =10311.895992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.361 6.361 6 C 0.437 3.563 7 O -0.515 6.515 8 C 0.135 3.865 9 N -0.641 5.641 10 C 0.052 3.948 11 C 0.500 3.500 12 O -0.583 6.583 13 N -0.708 5.708 14 C 0.269 3.731 15 C -0.557 4.557 16 H 0.082 0.918 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.982 3.018 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.257 1.257 23 C -0.099 4.099 24 C -0.108 4.108 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.096 4.096 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.356 0.644 38 H 0.062 0.938 39 H 0.122 0.878 40 H 0.406 0.594 41 H -0.011 1.011 42 H -0.012 1.012 43 H 0.269 0.731 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.074 0.926 52 H 0.063 0.937 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 -14.407 -20.285 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.070 3.930 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.278 6.278 6 C 0.278 3.722 7 O -0.402 6.402 8 C 0.041 3.959 9 N -0.275 5.275 10 C -0.080 4.080 11 C 0.287 3.713 12 O -0.463 6.463 13 N -0.359 5.359 14 C 0.146 3.854 15 C -0.594 4.594 16 H 0.100 0.900 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.805 3.195 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.133 4.133 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.177 0.823 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.241 0.759 41 H 0.007 0.993 42 H 0.006 0.994 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.079 0.921 51 H 0.092 0.908 52 H 0.082 0.918 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.078 -14.719 -19.619 25.047 hybrid contribution -1.128 1.461 -0.373 1.883 sum 3.950 -13.258 -19.992 24.312 Atomic orbital electron populations 1.22467 0.94072 1.03711 1.03503 1.22468 0.94533 0.93081 0.82903 1.21888 1.02438 0.91725 1.03666 1.22411 1.01813 1.02045 0.96843 1.86603 1.69707 1.25505 1.46009 1.25418 0.77196 0.80964 0.88593 1.90537 1.35541 1.70117 1.44008 1.21355 0.99715 0.92533 0.82255 1.60337 1.06701 1.24112 1.36301 1.21829 0.93682 0.96919 0.95532 1.21028 0.83945 0.81973 0.84368 1.90647 1.29028 1.66181 1.60432 1.46168 1.09984 1.41727 1.37994 1.18523 0.96716 0.85813 0.84304 1.21606 0.93390 1.24082 1.20369 0.90000 1.26024 1.01851 0.96297 0.95211 1.70132 1.32153 1.30963 1.23545 0.85195 0.77963 0.77269 0.79027 1.19593 1.20915 1.18042 1.21565 0.91539 1.00375 1.00221 1.21405 0.98948 0.97086 0.97125 1.21506 0.94364 0.97318 1.02012 1.21436 0.97318 0.99116 0.96940 1.21544 0.96639 0.94871 1.00277 0.92801 0.89056 0.91349 0.91155 0.88112 0.92697 0.91526 0.89171 0.91639 0.82334 0.92012 0.86012 0.75887 0.99319 0.99389 0.92240 0.89792 0.91103 0.91833 0.90496 0.91335 0.91174 0.92062 0.90752 0.91843 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 2 C 0.11 2.18 1.13 -10.79 -0.01 2.17 16 3 C -0.14 -2.51 8.85 71.98 0.64 -1.87 16 4 C -0.17 -3.09 8.37 71.98 0.60 -2.48 16 5 O -0.36 -8.87 8.87 -51.34 -0.46 -9.32 16 6 C 0.44 10.40 4.74 71.24 0.34 10.74 16 7 O -0.51 -13.29 11.59 21.97 0.25 -13.03 16 8 C 0.13 2.88 0.53 2.78 0.00 2.89 16 9 N -0.64 -16.82 4.18 -477.87 -2.00 -18.82 16 10 C 0.05 1.48 5.36 85.56 0.46 1.94 16 11 C 0.50 19.93 7.86 87.66 0.69 20.62 16 12 O -0.58 -28.31 16.07 -3.03 -0.05 -28.36 16 13 N -0.71 -29.98 5.55 -466.80 -2.59 -32.57 16 14 C 0.27 14.76 5.43 85.63 0.46 15.23 16 15 C -0.56 -30.26 9.28 25.60 0.24 -30.02 16 16 H 0.08 4.03 7.60 -2.92 -0.02 4.01 16 17 C 0.01 0.33 5.46 84.65 0.46 0.79 16 18 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 19 Si 0.98 42.23 29.54 68.60 2.03 44.26 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 C -0.10 -1.78 4.85 30.59 0.15 -1.63 16 24 C -0.11 -1.86 5.77 30.59 0.18 -1.68 16 25 C -0.11 -1.79 5.92 30.59 0.18 -1.60 16 26 C -0.11 -2.00 5.77 30.59 0.18 -1.82 16 27 C -0.10 -1.85 3.84 30.60 0.12 -1.73 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.61 5.89 -2.39 -0.01 1.60 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.41 5.89 -2.39 -0.01 1.40 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.36 10.46 7.82 -89.70 -0.70 9.76 16 38 H 0.06 1.68 6.64 -2.39 -0.02 1.66 16 39 H 0.12 2.98 6.61 -2.39 -0.02 2.96 16 40 H 0.41 14.37 8.32 -92.71 -0.77 13.60 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.39 7.60 -2.39 -0.02 1.37 16 47 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.06 1.38 7.60 -2.39 -0.02 1.37 16 51 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.06 1.28 6.51 -2.39 -0.02 1.26 16 53 H 0.08 1.54 7.87 -2.39 -0.02 1.52 16 Total: -1.00 -70.20 410.72 2.19 -68.02 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.57 Total: 37.08 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.28 Total: 8.39 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.30 Total: -107.03 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.25 Total: -50.71 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -70.20 2.19 -68.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759248679.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.094 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds