Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47424 * 2 1 4 4 C 1.52998 * 109.47589 * 239.99495 * 2 1 3 5 5 O 1.45208 * 109.46779 * 119.99589 * 2 1 3 6 6 C 1.34636 * 116.99983 * 60.00283 * 5 2 1 7 7 O 1.21514 * 120.00109 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00135 * 179.97438 * 6 5 2 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 C 1.52999 * 109.47001 * 295.13027 * 12 11 10 14 14 C 1.50704 * 109.46635 * 179.97438 * 13 12 11 15 15 O 1.21272 * 120.00387 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99671 * 180.02562 * 14 13 12 17 17 C 1.46504 * 120.00231 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47520 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99535 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99980 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99832 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00078 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47433 * 89.99587 * 22 20 18 24 24 H 1.48499 * 109.46763 * 209.99586 * 22 20 18 25 25 H 1.48496 * 109.46943 * 329.99149 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 28 28 H 1.08997 * 109.47283 * 300.00457 * 1 2 3 29 29 H 1.08999 * 109.46530 * 60.00281 * 1 2 3 30 30 H 1.09002 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47427 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46544 * 299.99998 * 3 2 1 33 33 H 1.09005 * 109.46960 * 59.99503 * 3 2 1 34 34 H 1.09002 * 109.47165 * 300.00269 * 4 2 1 35 35 H 1.08999 * 109.46767 * 59.99764 * 4 2 1 36 36 H 1.08997 * 109.47507 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 38 38 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 39 39 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 40 40 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 41 41 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 42 42 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 43 43 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 44 44 H 1.08991 * 109.47450 * 299.99495 * 13 12 11 45 45 H 1.08999 * 109.47142 * 60.00302 * 13 12 11 46 46 H 0.96998 * 120.00339 * 359.97438 * 16 14 13 47 47 H 1.09000 * 109.47097 * 300.00677 * 17 16 14 48 48 H 1.09007 * 109.46801 * 59.99574 * 17 16 14 49 49 H 0.97006 * 120.00019 * 180.02562 * 21 20 18 50 50 H 1.08994 * 109.50232 * 301.42239 * 26 11 10 51 51 H 1.09007 * 109.52628 * 181.33900 * 26 11 10 52 52 H 1.08994 * 109.58580 * 353.38021 * 27 8 6 53 53 H 1.09006 * 109.57831 * 113.65514 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9723 1.3385 7 8 0.9509 -2.5095 0.5042 8 7 2.0679 -2.6656 2.4169 9 6 1.6810 -4.0714 2.5978 10 6 2.9450 -4.9103 2.8107 11 6 3.7491 -4.3216 3.9762 12 6 4.9966 -5.1745 4.2156 13 6 4.5780 -6.5730 4.6738 14 6 5.8067 -7.4132 4.9091 15 8 6.9086 -6.9403 4.7277 16 7 5.6810 -8.6906 5.3201 17 6 6.8754 -9.5077 5.5482 18 6 6.4631 -10.8851 5.9996 19 1 5.4160 -11.1278 6.1055 20 6 7.4226 -11.8358 6.2764 21 7 7.0628 -13.0377 6.6708 22 14 9.2335 -11.4162 6.0926 23 1 9.7502 -10.8796 7.3771 24 1 9.9905 -12.6404 5.7272 25 1 9.3993 -10.3953 5.0271 26 6 4.1681 -2.8889 3.6391 27 6 2.9158 -2.0296 3.4345 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1391 36 1 3.1301 -0.7209 -1.2493 37 1 1.0311 -4.1624 3.4682 38 1 1.1545 -4.4226 1.7104 39 1 2.6650 -5.9384 3.0401 40 1 3.5511 -4.8913 1.9049 41 1 3.1337 -4.3178 4.8758 42 1 5.5675 -5.2510 3.2902 43 1 5.6126 -4.7093 4.9851 44 1 4.0071 -6.4965 5.5991 45 1 3.9620 -7.0382 3.9042 46 1 4.7996 -9.0690 5.4648 47 1 7.4458 -9.5838 4.6226 48 1 7.4919 -9.0429 6.3177 49 1 7.7378 -13.7065 6.8659 50 1 4.7628 -2.8890 2.7257 51 1 4.7597 -2.4800 4.4584 52 1 3.2062 -1.0344 3.0981 53 1 2.3654 -1.9523 4.3722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787627882.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -166.198038 kcal Electronic energy + Delta-G solvation = -29863.579477 eV Core-core repulsion = 25733.410330 eV Total energy + Delta-G solvation = -4130.169146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.92971 -40.66170 -39.69913 -37.79928 -36.22995 -35.73272 -34.78010 -34.39332 -32.17576 -31.83800 -29.90451 -28.35945 -28.28504 -27.10172 -24.78509 -24.40032 -23.35954 -22.37924 -21.35627 -21.00062 -20.18983 -19.17842 -18.86584 -17.67753 -17.60552 -17.25963 -16.99039 -16.66708 -16.25034 -15.96865 -15.55027 -15.52369 -15.36128 -14.97166 -14.83737 -14.69820 -14.55986 -14.37566 -14.25136 -13.93210 -13.59068 -13.37785 -13.19374 -13.09021 -13.06316 -12.86112 -12.85232 -12.73786 -12.68118 -12.46861 -12.30821 -12.15623 -12.00739 -11.94808 -11.72557 -11.64907 -11.37973 -11.37602 -11.22541 -10.97602 -10.92579 -10.73373 -9.89600 -9.73615 -8.40796 -6.47632 1.16478 1.31365 1.33851 1.46242 1.76382 1.80163 2.27102 2.55115 2.85382 2.94605 3.74406 3.77109 3.78282 3.80971 3.82045 3.95975 4.02682 4.11768 4.30598 4.35582 4.43335 4.46994 4.55812 4.61108 4.62030 4.70928 4.73775 4.77025 4.81744 4.84579 4.86942 4.87844 4.88760 4.98674 5.01718 5.02639 5.07691 5.13734 5.16294 5.23695 5.26793 5.28414 5.33781 5.37629 5.48640 5.54962 5.57862 5.59966 6.08916 6.33219 6.53881 6.89347 7.15818 7.28629 7.47279 8.73855 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030363 B = 0.001638 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.959898 B =17094.401719 C =17301.958726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.366 6.366 6 C 0.645 3.355 7 O -0.598 6.598 8 N -0.594 5.594 9 C 0.127 3.873 10 C -0.130 4.130 11 C -0.078 4.078 12 C -0.091 4.091 13 C -0.129 4.129 14 C 0.493 3.507 15 O -0.604 6.604 16 N -0.709 5.709 17 C 0.230 3.770 18 C -0.547 4.547 19 H 0.060 0.940 20 C 0.027 3.973 21 N -0.930 5.930 22 Si 0.937 3.063 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.263 1.263 26 C -0.127 4.127 27 C 0.114 3.886 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.409 0.591 47 H 0.009 0.991 48 H 0.009 0.991 49 H 0.272 0.728 50 H 0.052 0.948 51 H 0.091 0.909 52 H 0.091 0.909 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 31.091 -10.501 36.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.281 6.281 6 C 0.400 3.600 7 O -0.490 6.490 8 N -0.335 5.335 9 C 0.006 3.994 10 C -0.168 4.168 11 C -0.096 4.096 12 C -0.129 4.129 13 C -0.169 4.169 14 C 0.282 3.718 15 O -0.486 6.486 16 N -0.359 5.359 17 C 0.106 3.894 18 C -0.585 4.585 19 H 0.079 0.921 20 C -0.174 4.174 21 N -0.569 5.569 22 Si 0.761 3.239 23 H -0.189 1.189 24 H -0.198 1.198 25 H -0.187 1.187 26 C -0.165 4.165 27 C -0.008 4.008 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.139 0.861 45 H 0.132 0.868 46 H 0.245 0.755 47 H 0.026 0.974 48 H 0.027 0.973 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.110 0.890 52 H 0.109 0.891 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.347 31.134 -10.867 35.962 hybrid contribution 0.681 -0.867 -0.070 1.104 sum -13.666 30.267 -10.936 34.964 Atomic orbital electron populations 1.22451 0.93889 1.03587 1.03552 1.22388 0.94634 0.92684 0.81502 1.21872 1.02318 0.90673 1.04344 1.22465 1.01408 1.02184 0.97623 1.86298 1.71516 1.23154 1.47125 1.18229 0.78760 0.80957 0.82044 1.90876 1.42887 1.71016 1.44176 1.47191 1.52552 1.12512 1.21227 1.21731 0.97152 0.77291 1.03253 1.22120 0.95895 1.00199 0.98555 1.21186 0.95646 0.93792 0.99018 1.21279 0.97396 0.93115 1.01102 1.21782 0.94245 0.95287 1.05545 1.21745 0.92330 0.82122 0.75618 1.90621 1.30467 1.73171 1.54365 1.46114 1.10666 1.12182 1.66919 1.19064 0.85737 0.89636 0.94962 1.21321 0.95072 0.95460 1.46671 0.92148 1.25598 1.03559 0.94520 0.93710 1.69983 1.35919 1.04883 1.46133 0.85862 0.79957 0.78383 0.79710 1.18938 1.19777 1.18732 1.21949 0.97040 0.95062 1.02426 1.21872 0.90817 0.96652 0.91452 0.91831 0.89282 0.92058 0.91408 0.88138 0.90999 0.92137 0.89216 0.92343 0.88851 0.90222 0.88427 0.93090 0.88418 0.93458 0.92077 0.86114 0.86759 0.75489 0.97351 0.97275 0.91859 0.92960 0.89025 0.89106 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.37 71.98 0.60 -2.00 16 2 C 0.12 1.87 1.13 -10.79 -0.01 1.86 16 3 C -0.14 -1.21 8.85 71.98 0.64 -0.57 16 4 C -0.18 -2.87 8.37 71.98 0.60 -2.26 16 5 O -0.37 -6.96 8.53 -55.46 -0.47 -7.43 16 6 C 0.64 14.05 7.74 129.79 1.00 15.05 16 7 O -0.60 -15.93 11.29 19.80 0.22 -15.70 16 8 N -0.59 -10.19 2.97 -949.14 -2.82 -13.01 16 9 C 0.13 1.89 6.42 86.36 0.55 2.44 16 10 C -0.13 -1.85 5.16 30.78 0.16 -1.69 16 11 C -0.08 -1.06 2.15 -10.66 -0.02 -1.08 16 12 C -0.09 -1.85 3.97 30.60 0.12 -1.73 16 13 C -0.13 -2.75 5.46 29.85 0.16 -2.58 16 14 C 0.49 17.44 7.83 87.66 0.69 18.13 16 15 O -0.60 -26.77 15.98 -3.01 -0.05 -26.82 16 16 N -0.71 -27.62 5.55 -466.78 -2.59 -30.21 16 17 C 0.23 11.32 4.50 85.63 0.38 11.70 16 18 C -0.55 -30.23 9.83 25.60 0.25 -29.98 16 19 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 20 C 0.03 1.50 5.47 84.65 0.46 1.96 16 21 N -0.93 -55.52 13.96 21.45 0.30 -55.22 16 22 Si 0.94 44.29 27.47 68.60 1.88 46.17 16 23 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 26 C -0.13 -1.68 5.37 30.69 0.16 -1.51 16 27 C 0.11 1.41 6.45 86.38 0.56 1.96 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.26 5.88 -2.39 -0.01 1.24 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.06 1.33 5.88 -2.39 -0.01 1.31 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.47 7.00 -2.39 -0.02 1.45 16 39 H 0.10 1.14 6.52 -2.39 -0.02 1.13 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 43 H 0.06 1.38 8.10 -2.39 -0.02 1.37 16 44 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.11 1.95 6.53 -2.39 -0.02 1.93 16 46 H 0.41 13.67 8.32 -92.71 -0.77 12.90 16 47 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 48 H 0.01 0.48 7.57 -2.38 -0.02 0.46 16 49 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 50 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 52 H 0.09 1.14 6.93 -2.39 -0.02 1.12 16 53 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -75.16 411.74 2.85 -72.31 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.06 Total: 20.22 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.32 Total: 9.70 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -5.11 Total: -98.44 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.30 Total: -49.96 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -75.16 2.85 -72.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627882.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.889 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds