Wall clock time and date at job start Sat Apr 11 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.52991 * 109.47361 * 239.99425 * 2 1 3 5 5 O 1.45203 * 109.47089 * 119.99178 * 2 1 3 6 6 C 1.34635 * 116.99531 * 60.00061 * 5 2 1 7 7 O 1.21517 * 120.00303 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00103 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49439 * 180.02562 * 8 6 5 10 10 C 1.53950 * 86.11621 * 204.63969 * 9 8 6 11 11 C 1.53004 * 113.73988 * 221.94050 * 10 9 8 12 12 N 1.46501 * 109.46877 * 183.07251 * 11 10 9 13 13 C 1.34779 * 119.99823 * 180.02562 * 12 11 10 14 14 O 1.21275 * 119.99833 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99677 * 180.02562 * 13 12 11 16 16 C 1.53004 * 109.46731 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46894 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47050 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47205 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00441 * 359.97438 * 19 18 17 21 21 C 1.37884 * 120.00030 * 179.97438 * 19 18 17 22 22 N 1.31505 * 120.00144 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99730 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47165 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46915 * 120.00178 * 23 21 19 26 26 H 1.48502 * 109.46791 * 239.99744 * 23 21 19 27 27 C 1.47925 * 134.49772 * 0.02562 * 8 6 5 28 28 H 1.08998 * 109.47383 * 300.00728 * 1 2 3 29 29 H 1.09005 * 109.47304 * 60.00233 * 1 2 3 30 30 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46800 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46363 * 299.99466 * 3 2 1 33 33 H 1.08998 * 109.47637 * 59.99427 * 3 2 1 34 34 H 1.09000 * 109.47231 * 300.00556 * 4 2 1 35 35 H 1.09005 * 109.47089 * 60.00206 * 4 2 1 36 36 H 1.09000 * 109.47212 * 179.97438 * 4 2 1 37 37 H 1.09003 * 113.77049 * 90.34034 * 9 8 6 38 38 H 1.08993 * 113.77081 * 318.93795 * 9 8 6 39 39 H 1.09002 * 113.74276 * 90.74001 * 10 9 8 40 40 H 1.08998 * 109.46823 * 303.07465 * 11 10 9 41 41 H 1.08998 * 109.46745 * 63.07477 * 11 10 9 42 42 H 0.97000 * 119.99767 * 0.02562 * 12 11 10 43 43 H 1.09002 * 109.46960 * 299.99752 * 15 13 12 44 44 H 1.08997 * 109.47295 * 59.99878 * 15 13 12 45 45 H 1.08998 * 109.46823 * 299.99864 * 16 15 13 46 46 H 1.08998 * 109.46745 * 59.99877 * 16 15 13 47 47 H 1.09002 * 109.46905 * 299.99897 * 17 16 15 48 48 H 1.08997 * 109.47187 * 59.99923 * 17 16 15 49 49 H 1.09002 * 109.46862 * 299.99531 * 18 17 16 50 50 H 1.08997 * 109.47509 * 59.99728 * 18 17 16 51 51 H 0.97003 * 120.00281 * 179.97438 * 22 21 19 52 52 H 1.09006 * 113.87423 * 41.10256 * 27 8 6 53 53 H 1.08997 * 113.77410 * 269.60428 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6843 1.1857 6 6 1.6522 -1.9721 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6655 2.4169 9 6 1.8732 -4.0477 2.8959 10 6 2.1488 -3.4876 4.3032 11 6 3.0481 -4.3834 5.1575 12 7 3.1886 -3.8012 6.4945 13 6 3.9417 -4.4220 7.4240 14 8 4.5026 -5.4627 7.1538 15 6 4.0857 -3.8234 8.7996 16 6 4.9851 -4.7192 9.6539 17 6 5.1319 -4.1111 11.0502 18 6 6.0317 -5.0065 11.9043 19 6 6.1757 -4.4080 13.2797 20 1 5.6759 -3.4814 13.5206 21 6 6.9458 -5.0433 14.2309 22 7 7.5540 -6.1718 13.9378 23 14 7.1249 -4.3010 15.9357 24 1 6.3466 -3.0385 16.0101 25 1 6.6125 -5.2583 16.9487 26 1 8.5576 -4.0165 16.2036 27 6 2.9027 -2.3468 3.5958 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9565 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2493 37 1 2.6330 -4.7457 2.5443 38 1 0.8575 -4.4200 2.7625 39 1 1.2516 -3.1609 4.8290 40 1 2.6022 -5.3748 5.2378 41 1 4.0299 -4.4632 4.6909 42 1 2.7396 -2.9690 6.7107 43 1 4.5309 -2.8316 8.7194 44 1 3.1038 -3.7443 9.2661 45 1 4.5395 -5.7107 9.7339 46 1 5.9670 -4.7986 9.1875 47 1 5.5776 -3.1197 10.9697 48 1 4.1500 -4.0313 11.5168 49 1 5.5862 -5.9981 11.9848 50 1 7.0134 -5.0860 11.4376 51 1 8.0960 -6.6186 14.6068 52 1 2.7083 -1.3620 4.0208 53 1 3.9642 -2.5461 3.4494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805194862.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:56 Heat of formation + Delta-G solvation = -133.857077 kcal Electronic energy + Delta-G solvation = -28546.500041 eV Core-core repulsion = 24417.733304 eV Total energy + Delta-G solvation = -4128.766737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94531 -40.88212 -40.10528 -37.70514 -36.64233 -35.67625 -35.00973 -34.56993 -31.96606 -30.99250 -28.39228 -28.32085 -28.01586 -27.30012 -26.57655 -24.06048 -22.99544 -21.80548 -21.63766 -20.93771 -20.25509 -18.87775 -18.40382 -17.93280 -17.75708 -17.40657 -16.99562 -16.89908 -16.48213 -16.39824 -15.77590 -15.63576 -15.21066 -15.14479 -14.61714 -14.52440 -14.43773 -14.16266 -13.67495 -13.65822 -13.53410 -13.36410 -13.26295 -13.17837 -13.03845 -12.91073 -12.88733 -12.81401 -12.59346 -12.35791 -12.29576 -12.15867 -12.10208 -12.07942 -11.87928 -11.41992 -11.33198 -11.31792 -11.12569 -11.09908 -10.69574 -10.53665 -10.01640 -9.89409 -8.16911 -6.28834 0.93287 1.42021 1.42675 1.56159 1.71309 1.74704 2.23986 2.43692 2.69772 3.16092 3.26718 3.72310 3.75967 3.80101 3.84395 3.92575 3.99973 4.13103 4.19357 4.22200 4.23755 4.46434 4.52451 4.56955 4.59064 4.63140 4.68970 4.73059 4.73996 4.76717 4.81068 4.84978 4.85616 4.91194 4.92534 4.94294 5.10987 5.20062 5.24973 5.25266 5.30141 5.37614 5.41655 5.46252 5.53283 5.61866 5.81964 5.91175 6.27940 6.53455 6.65134 6.90222 7.20132 7.37464 7.40939 8.95460 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027386 B = 0.001294 C = 0.001257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.161959 B =21633.919520 C =22262.425680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.664 3.336 7 O -0.598 6.598 8 N -0.641 5.641 9 C 0.136 3.864 10 C -0.110 4.110 11 C 0.130 3.870 12 N -0.716 5.716 13 C 0.512 3.488 14 O -0.590 6.590 15 C -0.129 4.129 16 C -0.097 4.097 17 C -0.096 4.096 18 C 0.017 3.983 19 C -0.541 4.541 20 H 0.066 0.934 21 C -0.006 4.006 22 N -0.938 5.938 23 Si 0.968 3.032 24 H -0.257 1.257 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.112 3.888 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.419 0.581 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.041 0.959 46 H 0.042 0.958 47 H 0.061 0.939 48 H 0.060 0.940 49 H -0.016 1.016 50 H -0.015 1.015 51 H 0.262 0.738 52 H 0.101 0.899 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 16.771 -30.588 38.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.282 6.282 6 C 0.421 3.579 7 O -0.489 6.489 8 N -0.383 5.383 9 C 0.015 3.985 10 C -0.129 4.129 11 C 0.006 3.994 12 N -0.370 5.370 13 C 0.300 3.700 14 O -0.470 6.470 15 C -0.169 4.169 16 C -0.135 4.135 17 C -0.134 4.134 18 C -0.020 4.020 19 C -0.579 4.579 20 H 0.084 0.916 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.180 1.180 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.010 4.010 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.148 0.852 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.257 0.743 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.003 0.997 50 H 0.003 0.997 51 H 0.071 0.929 52 H 0.119 0.881 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.346 15.956 -31.227 38.690 hybrid contribution 0.322 -0.146 0.743 0.823 sum -16.024 15.811 -30.484 37.895 Atomic orbital electron populations 1.22464 0.93907 1.03565 1.03641 1.22413 0.94643 0.92684 0.81468 1.21884 1.02358 0.90663 1.04374 1.22470 1.01529 1.02131 0.97554 1.86321 1.71377 1.23156 1.47322 1.17800 0.78827 0.80778 0.80534 1.90893 1.43184 1.71364 1.43501 1.48941 1.53468 1.14733 1.21203 1.23334 1.03882 0.82219 0.89086 1.23240 1.00094 0.95564 0.94048 1.21238 0.99526 0.96825 0.81820 1.45821 1.51139 1.27975 1.12020 1.21115 0.77403 0.83904 0.87584 1.90710 1.48746 1.25680 1.81829 1.21671 1.03350 1.01082 0.90761 1.21249 0.98996 0.98417 0.94878 1.21453 0.99487 0.98746 0.93704 1.19075 0.93979 0.94570 0.94392 1.21805 1.29530 1.08508 0.98046 0.91551 1.26071 0.95281 0.95328 1.03616 1.70135 1.33109 1.18536 1.36062 0.85354 0.77997 0.78808 0.78599 1.18042 1.20560 1.20538 1.23639 0.96004 1.00766 0.80568 0.91877 0.89143 0.92089 0.91360 0.87995 0.91121 0.92142 0.89066 0.92139 0.88115 0.88979 0.85215 0.91238 0.91441 0.74297 0.86249 0.86346 0.93981 0.93938 0.92051 0.92090 0.99741 0.99708 0.92905 0.88064 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 8.37 71.98 0.60 -1.84 16 2 C 0.12 1.73 1.13 -10.79 -0.01 1.72 16 3 C -0.14 -1.10 8.85 71.98 0.64 -0.46 16 4 C -0.18 -2.55 8.37 71.98 0.60 -1.95 16 5 O -0.37 -6.65 9.88 -55.45 -0.55 -7.20 16 6 C 0.66 13.52 8.22 129.79 1.07 14.58 16 7 O -0.60 -15.22 12.61 19.79 0.25 -14.97 16 8 N -0.64 -9.21 3.62 -966.05 -3.49 -12.70 16 9 C 0.14 1.32 8.40 86.49 0.73 2.05 16 10 C -0.11 -0.68 3.93 -10.13 -0.04 -0.72 16 11 C 0.13 1.44 5.51 86.38 0.48 1.91 16 12 N -0.72 -9.06 5.56 -463.05 -2.57 -11.63 16 13 C 0.51 11.81 7.83 87.66 0.69 12.49 16 14 O -0.59 -20.10 15.98 -3.01 -0.05 -20.15 16 15 C -0.13 -2.80 5.70 29.85 0.17 -2.63 16 16 C -0.10 -3.35 4.50 30.60 0.14 -3.21 16 17 C -0.10 -3.83 5.15 30.59 0.16 -3.67 16 18 C 0.02 0.92 4.97 29.84 0.15 1.07 16 19 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 20 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 21 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 22 N -0.94 -58.75 13.29 21.45 0.28 -58.46 16 23 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.11 0.89 8.45 86.42 0.73 1.62 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 1.19 5.88 -2.39 -0.01 1.17 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 1.21 5.88 -2.39 -0.01 1.20 16 35 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 0.89 7.88 -2.39 -0.02 0.87 16 42 H 0.42 2.30 8.47 -92.71 -0.79 1.51 16 43 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.60 8.10 -2.39 -0.02 1.59 16 46 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 47 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 49 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 50 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 51 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 52 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 53 H 0.10 0.72 7.92 -2.39 -0.02 0.70 16 Total: -1.00 -83.65 430.56 2.77 -80.87 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.09 Total: 7.54 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 6.79 Total: -9.80 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -5.78 Total: -82.80 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.35 Total: -42.32 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -83.65 2.77 -80.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805194862.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.985 kcal (2) G-P(sol) polarization free energy of solvation -83.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds