Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47102 * 2 1 4 4 C 1.53000 * 109.46988 * 240.00100 * 2 1 3 5 5 O 1.45202 * 109.46998 * 119.99951 * 2 1 3 6 6 C 1.34642 * 116.99660 * 59.99976 * 5 2 1 7 7 O 1.21505 * 120.00167 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99438 * 180.02562 * 6 5 2 9 9 C 1.47416 * 125.65154 * 0.02562 * 8 6 5 10 10 C 1.54910 * 104.83316 * 155.85202 * 9 8 6 11 11 C 1.55160 * 101.57772 * 37.01457 * 10 9 8 12 12 H 1.09004 * 110.87029 * 82.93033 * 11 10 9 13 13 C 1.52997 * 110.71975 * 206.13434 * 11 10 9 14 14 N 1.46910 * 109.47073 * 288.39823 * 13 11 10 15 15 C 1.47846 * 110.99727 * 285.39551 * 14 13 11 16 16 C 1.54910 * 104.79096 * 213.63431 * 15 14 13 17 17 C 1.55138 * 101.65305 * 37.07438 * 16 15 14 18 18 O 1.42898 * 110.70941 * 82.72730 * 17 16 15 19 19 C 1.50704 * 110.70459 * 205.96059 * 17 16 15 20 20 H 1.07997 * 119.99792 * 113.59384 * 19 17 16 21 21 C 1.37872 * 119.99854 * 293.59996 * 19 17 16 22 22 N 1.31510 * 120.00483 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 119.99878 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47266 * 59.99518 * 23 21 19 25 25 H 1.48499 * 109.47002 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46889 * 299.99875 * 23 21 19 27 27 C 1.47440 * 110.99885 * 164.55238 * 14 13 11 28 28 C 1.47019 * 125.64564 * 180.02562 * 8 6 5 29 29 H 1.08994 * 109.47050 * 300.00228 * 1 2 3 30 30 H 1.09005 * 109.46678 * 60.00447 * 1 2 3 31 31 H 1.08997 * 109.46801 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47351 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47357 * 300.00105 * 3 2 1 34 34 H 1.09006 * 109.47029 * 59.99679 * 3 2 1 35 35 H 1.09003 * 109.47230 * 299.99737 * 4 2 1 36 36 H 1.08992 * 109.47540 * 60.00202 * 4 2 1 37 37 H 1.09005 * 109.46756 * 180.02562 * 4 2 1 38 38 H 1.09001 * 110.37450 * 274.69877 * 9 8 6 39 39 H 1.09001 * 110.36466 * 37.01736 * 9 8 6 40 40 H 1.09005 * 111.00608 * 155.08391 * 10 9 8 41 41 H 1.08992 * 111.00883 * 278.94252 * 10 9 8 42 42 H 1.08996 * 109.47331 * 48.39429 * 13 11 10 43 43 H 1.08996 * 109.47394 * 168.40166 * 13 11 10 44 44 H 1.09002 * 110.37592 * 332.46295 * 15 14 13 45 45 H 1.08998 * 110.36968 * 94.80867 * 15 14 13 46 46 H 1.08993 * 110.99207 * 278.97624 * 16 15 14 47 47 H 1.09000 * 111.01691 * 155.17456 * 16 15 14 48 48 H 0.96705 * 113.99967 * 66.39824 * 18 17 16 49 49 H 0.97003 * 120.00392 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.88586 * 242.66371 * 27 14 13 51 51 H 1.08998 * 109.88855 * 3.85060 * 27 14 13 52 52 H 1.09004 * 109.88159 * 300.49539 * 28 8 6 53 53 H 1.09005 * 109.88519 * 61.49946 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0671 -2.6654 2.4172 9 6 2.9158 -2.1397 3.5019 10 6 2.5972 -3.0359 4.7246 11 6 2.4135 -4.4232 4.0544 12 1 3.3768 -4.9074 3.8937 13 6 1.4960 -5.3133 4.8951 14 7 2.2019 -5.7318 6.1136 15 6 3.2119 -6.7683 5.8112 16 6 3.2284 -7.6813 7.0625 17 6 1.7280 -7.7006 7.4562 18 8 1.0147 -8.6667 6.6818 19 6 1.5672 -7.9728 8.9297 20 1 1.1685 -7.2080 9.5797 21 6 1.9292 -9.1980 9.4479 22 7 2.4143 -10.1295 8.6563 23 14 1.7306 -9.5352 11.2745 24 1 0.3011 -9.3944 11.6513 25 1 2.1878 -10.9156 11.5756 26 1 2.5445 -8.5637 12.0485 27 6 1.2597 -6.2712 7.1111 28 6 1.7483 -4.0710 2.7072 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7216 -1.2490 38 1 3.9691 -2.2236 3.2342 39 1 2.6594 -1.1020 3.7151 40 1 3.4303 -3.0487 5.4274 41 1 1.6787 -2.7147 5.2157 42 1 0.5996 -4.7563 5.1677 43 1 1.2151 -6.1938 4.3174 44 1 2.9187 -7.3381 4.9295 45 1 4.1905 -6.3121 5.6613 46 1 3.8349 -7.2451 7.8562 47 1 3.5790 -8.6824 6.8114 48 1 1.2716 -9.5817 6.8608 49 1 2.6694 -10.9914 9.0210 50 1 1.2724 -5.6504 8.0069 51 1 0.2537 -6.3015 6.6926 52 1 0.6684 -4.1982 2.7827 53 1 2.1425 -4.7111 1.9178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829975021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -145.784304 kcal Electronic energy + Delta-G solvation = -30795.945380 eV Core-core repulsion = 26666.661439 eV Total energy + Delta-G solvation = -4129.283940 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.88476 -40.43390 -39.45516 -37.67591 -36.49816 -35.09528 -34.10899 -33.40318 -31.10178 -30.11413 -29.83317 -28.36120 -28.27940 -27.12388 -25.65573 -24.18238 -22.73970 -22.07099 -21.24284 -20.90491 -20.39738 -19.11474 -18.91385 -17.86847 -17.49562 -16.93919 -16.90605 -16.38197 -16.12710 -15.98205 -15.67085 -15.41589 -15.09087 -14.78549 -14.52444 -14.34979 -14.06335 -13.88233 -13.71565 -13.52553 -13.47158 -13.33079 -13.17154 -13.06010 -12.90678 -12.85650 -12.83684 -12.61647 -12.45026 -12.38459 -12.30631 -12.27851 -12.15831 -11.98028 -11.92416 -11.56956 -11.53110 -11.38819 -11.12223 -11.09428 -10.60765 -10.06412 -9.80725 -9.19614 -8.20635 -6.35045 1.04298 1.42816 1.43780 1.51263 1.71699 2.39575 2.88828 3.01435 3.05968 3.65339 3.71221 3.76846 3.79131 3.81099 3.95273 3.96030 4.22939 4.29119 4.35791 4.41593 4.45772 4.50007 4.58834 4.59404 4.62031 4.65028 4.72812 4.73824 4.77013 4.77484 4.84703 4.88878 4.89658 4.97015 5.02648 5.08517 5.16842 5.17318 5.28023 5.28545 5.33500 5.34822 5.39337 5.46325 5.51330 5.59069 5.83482 5.98633 6.21556 6.27684 6.40686 6.69422 7.23018 7.35686 7.45495 8.84414 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.001899 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.818305 B =14739.102258 C =14879.237984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.364 6.364 6 C 0.661 3.339 7 O -0.596 6.596 8 N -0.606 5.606 9 C 0.104 3.896 10 C -0.107 4.107 11 C -0.079 4.079 12 H 0.093 0.907 13 C 0.064 3.936 14 N -0.516 5.516 15 C 0.052 3.948 16 C -0.125 4.125 17 C 0.217 3.783 18 O -0.601 6.601 19 C -0.556 4.556 20 H 0.057 0.943 21 C 0.027 3.973 22 N -0.916 5.916 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.065 3.935 28 C 0.133 3.867 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.034 0.966 45 H 0.089 0.911 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.377 0.623 49 H 0.269 0.731 50 H 0.079 0.921 51 H 0.041 0.959 52 H 0.063 0.937 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 21.054 -15.319 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.278 6.278 6 C 0.416 3.584 7 O -0.488 6.488 8 N -0.346 5.346 9 C -0.018 4.018 10 C -0.145 4.145 11 C -0.099 4.099 12 H 0.111 0.889 13 C -0.065 4.065 14 N -0.239 5.239 15 C -0.076 4.076 16 C -0.164 4.164 17 C 0.177 3.823 18 O -0.411 6.411 19 C -0.594 4.594 20 H 0.075 0.925 21 C -0.173 4.173 22 N -0.556 5.556 23 Si 0.785 3.215 24 H -0.201 1.201 25 H -0.208 1.208 26 H -0.195 1.195 27 C -0.062 4.062 28 C 0.011 3.989 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.107 0.893 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.227 0.773 49 H 0.078 0.922 50 H 0.097 0.903 51 H 0.059 0.941 52 H 0.081 0.919 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.477 21.828 -15.741 27.025 hybrid contribution -0.453 -2.151 0.838 2.353 sum 2.024 19.676 -14.903 24.766 Atomic orbital electron populations 1.22470 0.94124 1.03468 1.03607 1.22457 0.94551 0.92858 0.81505 1.21871 1.02466 0.90368 1.04364 1.22465 1.01628 1.02064 0.97447 1.86318 1.71499 1.22592 1.47406 1.17664 0.78615 0.80870 0.81206 1.90888 1.42659 1.71209 1.44042 1.47282 1.53135 1.12756 1.21474 1.22551 0.94782 0.99095 0.85326 1.22700 1.03721 0.92018 0.96020 1.22048 0.99266 0.96700 0.91863 0.88871 1.22255 0.96196 0.97577 0.90448 1.63654 1.13596 1.36900 1.09793 1.23036 0.96358 0.91646 0.96546 1.22969 0.99229 0.98017 0.96186 1.20009 0.87858 0.85639 0.88768 1.86068 1.67387 1.20519 1.67098 1.21877 1.43332 0.99826 0.94383 0.92483 1.25701 0.93500 0.95825 1.02263 1.69665 1.43544 1.05585 1.36827 0.85592 0.78449 0.77217 0.80234 1.20120 1.20800 1.19546 1.22696 0.94140 0.93833 0.95573 1.21873 1.00370 0.79421 0.97217 0.92023 0.88952 0.92338 0.91112 0.87879 0.91200 0.92322 0.88959 0.91920 0.89928 0.89398 0.88082 0.90765 0.90755 0.95493 0.94722 0.89280 0.92859 0.93120 0.77271 0.92175 0.90274 0.94055 0.91853 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 2 C 0.12 2.14 1.13 -10.79 -0.01 2.12 16 3 C -0.13 -1.41 8.85 71.98 0.64 -0.77 16 4 C -0.18 -3.09 8.37 71.98 0.60 -2.49 16 5 O -0.36 -8.17 9.42 -55.52 -0.52 -8.69 16 6 C 0.66 17.52 7.93 129.79 1.03 18.55 16 7 O -0.60 -18.72 12.21 19.82 0.24 -18.47 16 8 N -0.61 -14.16 3.33 -942.11 -3.13 -17.29 16 9 C 0.10 1.84 6.92 86.86 0.60 2.44 16 10 C -0.11 -2.01 6.46 31.99 0.21 -1.80 16 11 C -0.08 -1.76 3.01 -9.61 -0.03 -1.79 16 12 H 0.09 2.03 7.58 -2.39 -0.02 2.01 16 13 C 0.06 1.83 3.97 86.30 0.34 2.17 16 14 N -0.52 -17.59 5.05 -885.54 -4.47 -22.06 16 15 C 0.05 1.84 5.98 86.77 0.52 2.36 16 16 C -0.13 -5.61 5.66 31.98 0.18 -5.42 16 17 C 0.22 10.61 0.86 -10.36 -0.01 10.60 16 18 O -0.60 -31.49 13.09 -148.98 -1.95 -33.44 16 19 C -0.56 -29.51 8.21 25.60 0.21 -29.29 16 20 H 0.06 3.00 7.53 -2.91 -0.02 2.97 16 21 C 0.03 1.41 5.28 84.65 0.45 1.86 16 22 N -0.92 -48.83 10.69 21.44 0.23 -48.60 16 23 Si 0.96 41.88 29.54 68.60 2.03 43.91 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.07 2.72 6.19 86.65 0.54 3.25 16 28 C 0.13 3.12 6.46 86.73 0.56 3.68 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 40 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.07 1.48 7.94 -2.39 -0.02 1.46 16 42 H 0.07 2.07 7.72 -2.39 -0.02 2.05 16 43 H 0.03 0.85 7.69 -2.39 -0.02 0.83 16 44 H 0.03 1.26 7.53 -2.39 -0.02 1.25 16 45 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.05 2.45 8.04 -2.39 -0.02 2.43 16 47 H 0.05 2.45 7.76 -2.39 -0.02 2.43 16 48 H 0.38 20.42 6.99 -74.05 -0.52 19.91 16 49 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 50 H 0.08 3.27 7.63 -2.39 -0.02 3.25 16 51 H 0.04 1.73 7.40 -2.39 -0.02 1.71 16 52 H 0.06 1.59 7.82 -2.39 -0.02 1.58 16 53 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -61.82 407.60 -0.78 -62.60 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.37 Total: 39.15 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 6.43 Total: 2.89 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -7.37 Total: -87.95 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -2.23 Total: -60.60 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -61.82 -0.78 -62.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.182 kcal (2) G-P(sol) polarization free energy of solvation -61.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds