Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 C 1.53000 * 109.47238 * 239.99404 * 2 1 3 5 5 O 1.45205 * 109.46842 * 119.99590 * 2 1 3 6 6 C 1.34642 * 116.99664 * 60.00237 * 5 2 1 7 7 O 1.21504 * 120.00058 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99443 * 180.02562 * 6 5 2 9 9 C 1.47425 * 125.65252 * 359.95684 * 8 6 5 10 10 C 1.54907 * 104.83003 * 204.16478 * 9 8 6 11 11 C 1.55155 * 101.58319 * 322.98720 * 10 9 8 12 12 H 1.09001 * 110.87353 * 277.06579 * 11 10 9 13 13 C 1.53005 * 110.71911 * 153.86778 * 11 10 9 14 14 N 1.46896 * 109.46969 * 71.62143 * 13 11 10 15 15 C 1.47450 * 111.00212 * 74.69041 * 14 13 11 16 16 C 1.54317 * 107.23556 * 123.25256 * 15 14 13 17 17 C 1.55147 * 103.01892 * 22.28618 * 16 15 14 18 18 O 1.42901 * 110.99106 * 82.43174 * 17 16 15 19 19 C 1.50696 * 110.99216 * 206.25272 * 17 16 15 20 20 H 1.08000 * 119.99863 * 112.26319 * 19 17 16 21 21 C 1.37873 * 120.00103 * 292.26578 * 19 17 16 22 22 N 1.31517 * 119.99879 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00030 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47086 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46983 * 120.00481 * 23 21 19 26 26 H 1.48500 * 109.47235 * 240.00203 * 23 21 19 27 27 C 1.47849 * 110.99932 * 195.52737 * 14 13 11 28 28 C 1.47024 * 125.64362 * 179.97438 * 8 6 5 29 29 H 1.08992 * 109.47351 * 300.00817 * 1 2 3 30 30 H 1.09008 * 109.46617 * 60.00069 * 1 2 3 31 31 H 1.08995 * 109.47563 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47276 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46789 * 299.99381 * 3 2 1 34 34 H 1.08992 * 109.47488 * 59.99267 * 3 2 1 35 35 H 1.08999 * 109.47374 * 300.00042 * 4 2 1 36 36 H 1.09001 * 109.47250 * 60.00494 * 4 2 1 37 37 H 1.09003 * 109.47134 * 180.02562 * 4 2 1 38 38 H 1.08999 * 110.36601 * 323.00242 * 9 8 6 39 39 H 1.09002 * 110.36721 * 85.32365 * 9 8 6 40 40 H 1.09007 * 111.00114 * 204.91203 * 10 9 8 41 41 H 1.08997 * 111.00944 * 81.06528 * 10 9 8 42 42 H 1.09002 * 109.47241 * 311.62297 * 13 11 10 43 43 H 1.09005 * 109.46823 * 191.61952 * 13 11 10 44 44 H 1.08996 * 109.88868 * 242.66017 * 15 14 13 45 45 H 1.09002 * 109.88199 * 3.68845 * 15 14 13 46 46 H 1.08999 * 110.70813 * 140.66804 * 16 15 14 47 47 H 1.08996 * 110.70828 * 263.90804 * 16 15 14 48 48 H 0.96707 * 113.99219 * 67.73461 * 18 17 16 49 49 H 0.96998 * 119.99761 * 180.02562 * 22 21 19 50 50 H 1.08994 * 110.37296 * 332.47080 * 27 14 13 51 51 H 1.09004 * 110.37064 * 94.80754 * 27 14 13 52 52 H 1.09005 * 109.88432 * 59.49119 * 28 8 6 53 53 H 1.09000 * 110.01710 * 298.39682 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0670 -2.6653 2.4173 9 6 2.9169 -2.1399 3.5014 10 6 3.5986 -3.3898 4.1119 11 6 2.4588 -4.4391 4.0268 12 1 1.7777 -4.3421 4.8723 13 6 3.0318 -5.8560 3.9557 14 7 3.5928 -6.2235 5.2626 15 6 2.5227 -6.5251 6.2311 16 6 2.7698 -7.9554 6.7550 17 6 4.2819 -8.1710 6.4825 18 8 5.0766 -7.5933 7.5201 19 6 4.5970 -9.6352 6.3158 20 1 4.9073 -10.0146 5.3534 21 6 4.4890 -10.4904 7.3918 22 7 4.1105 -10.0285 8.5636 23 14 4.8789 -12.3056 7.1850 24 1 5.2781 -12.5691 5.7792 25 1 5.9923 -12.6793 8.0937 26 1 3.6766 -13.1112 7.5179 27 6 4.4712 -7.4072 5.1481 28 6 1.7473 -4.0706 2.7079 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6767 1.9564 0.8898 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2076 -2.1392 37 1 3.1300 -0.7218 -1.2489 38 1 3.6658 -1.4576 3.0994 39 1 2.3070 -1.6360 4.2512 40 1 3.8880 -3.2103 5.1474 41 1 4.4577 -3.6968 3.5155 42 1 3.8165 -5.8931 3.2000 43 1 2.2389 -6.5556 3.6909 44 1 2.5601 -5.8157 7.0578 45 1 1.5514 -6.4704 5.7394 46 1 2.5581 -8.0168 7.8225 47 1 2.1714 -8.6779 6.2001 48 1 4.9911 -8.0379 8.3747 49 1 4.0349 -10.6301 9.3206 50 1 4.1626 -8.0290 4.3079 51 1 5.5102 -7.0988 5.0316 52 1 2.1095 -4.7077 1.9010 53 1 0.6701 -4.1925 2.8211 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829975022.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -144.959940 kcal Electronic energy + Delta-G solvation = -30765.050584 eV Core-core repulsion = 26635.802391 eV Total energy + Delta-G solvation = -4129.248193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88222 -40.41578 -39.43139 -37.67147 -36.50678 -35.09252 -34.09192 -33.36630 -31.07107 -30.11861 -29.81774 -28.35899 -28.28027 -27.18178 -25.67802 -24.22620 -22.74316 -22.01317 -21.35189 -20.72113 -20.38500 -19.08633 -18.89719 -17.81445 -17.47948 -16.94279 -16.86900 -16.73526 -16.11168 -15.77482 -15.76175 -15.27997 -15.03996 -14.67948 -14.65166 -14.28752 -14.17443 -13.85672 -13.78099 -13.52911 -13.37951 -13.33008 -13.12384 -13.05129 -12.91384 -12.85939 -12.85380 -12.67205 -12.54219 -12.43350 -12.28995 -12.23325 -12.20573 -11.95619 -11.85915 -11.62639 -11.45782 -11.38392 -11.12347 -11.09082 -10.58807 -10.03233 -9.80458 -9.10403 -8.22701 -6.37608 1.04985 1.38427 1.42298 1.52316 1.71969 2.37417 2.88527 3.01339 3.06930 3.65222 3.72032 3.77011 3.79163 3.81313 3.95766 4.09336 4.11235 4.23362 4.30716 4.40340 4.47472 4.50444 4.51464 4.59725 4.62215 4.68940 4.72008 4.75102 4.77217 4.81500 4.84853 4.88915 4.91522 4.95348 5.03368 5.08514 5.12341 5.17305 5.27839 5.28695 5.31963 5.34795 5.39288 5.46366 5.50943 5.58373 5.82056 5.98186 6.22814 6.33690 6.41047 6.68626 7.23225 7.34489 7.54200 8.82918 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.032979 B = 0.001909 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.827823 B =14660.982642 C =14903.744395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.365 6.365 6 C 0.661 3.339 7 O -0.595 6.595 8 N -0.606 5.606 9 C 0.105 3.895 10 C -0.108 4.108 11 C -0.081 4.081 12 H 0.092 0.908 13 C 0.061 3.939 14 N -0.522 5.522 15 C 0.054 3.946 16 C -0.141 4.141 17 C 0.233 3.767 18 O -0.589 6.589 19 C -0.559 4.559 20 H 0.055 0.945 21 C 0.028 3.972 22 N -0.914 5.914 23 Si 0.959 3.041 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.067 3.933 28 C 0.134 3.866 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.044 0.956 48 H 0.375 0.625 49 H 0.270 0.730 50 H 0.048 0.952 51 H 0.064 0.936 52 H 0.067 0.933 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 21.123 -13.952 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.279 6.279 6 C 0.417 3.583 7 O -0.487 6.487 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.146 4.146 11 C -0.100 4.100 12 H 0.110 0.890 13 C -0.068 4.068 14 N -0.246 5.246 15 C -0.073 4.073 16 C -0.181 4.181 17 C 0.193 3.807 18 O -0.398 6.398 19 C -0.598 4.598 20 H 0.073 0.927 21 C -0.172 4.172 22 N -0.554 5.554 23 Si 0.785 3.215 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.060 4.060 28 C 0.012 3.988 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.225 0.775 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.082 0.918 52 H 0.085 0.915 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.562 21.878 -14.472 26.815 hybrid contribution -0.558 -2.539 0.334 2.621 sum -6.119 19.339 -14.137 24.725 Atomic orbital electron populations 1.22462 0.93976 1.03521 1.03625 1.22455 0.94649 0.92802 0.81461 1.21872 1.02417 0.90447 1.04376 1.22469 1.01572 1.02106 0.97495 1.86321 1.71528 1.22671 1.47405 1.17653 0.78663 0.80880 0.81120 1.90885 1.42694 1.71189 1.43921 1.47282 1.53118 1.12853 1.21404 1.22525 0.93476 0.97228 0.88449 1.22680 0.96842 0.92564 1.02519 1.22075 0.97479 0.94442 0.96008 0.89005 1.22268 0.98264 0.95108 0.91134 1.63490 1.17843 1.34971 1.08261 1.22750 0.93048 0.95758 0.95757 1.23101 0.99582 0.95229 1.00149 1.19779 0.86625 0.89602 0.84693 1.86090 1.70122 1.60299 1.23303 1.21909 1.46955 0.94343 0.96575 0.92680 1.25692 0.93632 1.02937 0.94922 1.69671 1.47584 1.37025 1.01108 0.85494 0.77848 0.79936 0.78234 1.19534 1.20491 1.20474 1.22817 0.96976 0.89812 0.96424 1.21883 1.00135 0.79373 0.97412 0.91964 0.88967 0.92233 0.91241 0.87869 0.91155 0.92254 0.88949 0.92067 0.89503 0.90059 0.88698 0.90834 0.90566 0.94398 0.91466 0.92020 0.93033 0.93731 0.77491 0.92086 0.93344 0.91781 0.91505 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.37 71.98 0.60 -2.45 16 2 C 0.12 2.12 1.13 -10.79 -0.01 2.11 16 3 C -0.13 -1.42 8.85 71.98 0.64 -0.78 16 4 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 5 O -0.36 -8.18 9.42 -55.51 -0.52 -8.70 16 6 C 0.66 17.28 7.93 129.79 1.03 18.31 16 7 O -0.60 -18.25 12.21 19.83 0.24 -18.01 16 8 N -0.61 -13.99 3.33 -942.09 -3.13 -17.12 16 9 C 0.10 1.92 6.92 86.85 0.60 2.52 16 10 C -0.11 -2.15 6.46 31.98 0.21 -1.94 16 11 C -0.08 -1.76 2.98 -9.60 -0.03 -1.79 16 12 H 0.09 1.99 7.45 -2.39 -0.02 1.98 16 13 C 0.06 1.63 3.87 86.31 0.33 1.97 16 14 N -0.52 -17.98 5.05 -885.51 -4.47 -22.44 16 15 C 0.05 1.94 6.20 86.64 0.54 2.48 16 16 C -0.14 -6.33 5.63 31.78 0.18 -6.15 16 17 C 0.23 11.41 0.89 -10.15 -0.01 11.40 16 18 O -0.59 -30.99 13.18 -148.98 -1.96 -32.96 16 19 C -0.56 -29.76 8.25 25.60 0.21 -29.55 16 20 H 0.05 2.92 7.77 -2.91 -0.02 2.89 16 21 C 0.03 1.48 5.29 84.65 0.45 1.93 16 22 N -0.91 -48.66 10.77 21.45 0.23 -48.43 16 23 Si 0.96 41.92 29.54 68.60 2.03 43.95 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 C 0.07 2.79 5.82 86.77 0.50 3.30 16 28 C 0.13 2.99 6.47 86.73 0.56 3.55 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.07 1.54 7.94 -2.39 -0.02 1.52 16 42 H 0.08 1.99 7.86 -2.39 -0.02 1.97 16 43 H 0.04 1.02 7.81 -2.38 -0.02 1.01 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.06 1.89 7.21 -2.39 -0.02 1.87 16 46 H 0.05 2.50 7.83 -2.39 -0.02 2.48 16 47 H 0.04 2.03 8.03 -2.39 -0.02 2.01 16 48 H 0.37 20.35 6.94 -74.05 -0.51 19.84 16 49 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 50 H 0.05 1.95 7.68 -2.39 -0.02 1.93 16 51 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 52 H 0.07 1.56 7.82 -2.38 -0.02 1.54 16 53 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -61.92 408.38 -0.82 -62.74 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.37 Total: 38.60 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.40 Total: 2.39 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -7.37 Total: -87.99 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -2.24 Total: -59.67 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -61.92 -0.82 -62.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975022.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.224 kcal (2) G-P(sol) polarization free energy of solvation -61.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds