Wall clock time and date at job start Sat Apr 11 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99852 * 2 1 4 4 C 1.50698 * 109.47246 * 270.00057 * 3 2 1 5 5 H 1.07999 * 120.00222 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99994 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99569 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99680 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47177 * 90.00517 * 8 6 4 10 10 H 1.48502 * 109.46836 * 209.99584 * 8 6 4 11 11 H 1.48498 * 109.47589 * 329.99757 * 8 6 4 12 12 C 1.34778 * 120.00072 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99834 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00210 * 359.97438 * 12 2 1 15 15 H 1.09004 * 109.50722 * 59.94031 * 14 12 2 16 16 C 1.52567 * 109.49121 * 180.02562 * 14 12 2 17 17 C 1.47092 * 114.32387 * 204.97153 * 16 14 12 18 18 C 1.54862 * 110.32509 * 297.19739 * 17 16 14 19 19 N 1.44577 * 109.59453 * 71.27442 * 18 17 16 20 20 C 1.34773 * 118.64885 * 89.24857 * 19 18 17 21 21 O 1.21515 * 120.00342 * 180.02562 * 20 19 18 22 22 O 1.34641 * 119.99906 * 0.02562 * 20 19 18 23 23 C 1.45197 * 117.00191 * 180.02562 * 22 20 19 24 24 C 1.52995 * 109.47510 * 59.99780 * 23 22 20 25 25 C 1.53000 * 109.47141 * 180.02562 * 23 22 20 26 26 C 1.53004 * 109.46895 * 300.00050 * 23 22 20 27 27 C 1.47606 * 122.71017 * 269.26905 * 19 18 17 28 28 C 1.50887 * 109.48741 * 299.89189 * 14 12 2 29 29 H 1.08994 * 109.46823 * 269.99845 * 1 2 3 30 30 H 1.08998 * 109.46878 * 29.99694 * 1 2 3 31 31 H 1.09002 * 109.46898 * 149.99944 * 1 2 3 32 32 H 1.08995 * 109.47149 * 30.00560 * 3 2 1 33 33 H 1.09005 * 109.47064 * 150.00120 * 3 2 1 34 34 H 0.97006 * 119.98968 * 179.97438 * 7 6 4 35 35 H 1.09000 * 108.50769 * 83.72096 * 16 14 12 36 36 H 1.08999 * 108.39119 * 326.13884 * 16 14 12 37 37 H 1.09001 * 109.32559 * 176.93674 * 17 16 14 38 38 H 1.09002 * 109.18681 * 57.37710 * 17 16 14 39 39 H 1.08988 * 109.45449 * 311.23093 * 18 17 16 40 40 H 1.09007 * 109.44758 * 191.30403 * 18 17 16 41 41 H 1.09000 * 109.46808 * 60.00037 * 24 23 22 42 42 H 1.08991 * 109.47588 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47310 * 300.00316 * 24 23 22 44 44 H 1.08998 * 109.46964 * 59.99733 * 25 23 22 45 45 H 1.08998 * 109.46897 * 179.97438 * 25 23 22 46 46 H 1.09000 * 109.47000 * 299.99855 * 25 23 22 47 47 H 1.08999 * 109.47271 * 59.99660 * 26 23 22 48 48 H 1.09003 * 109.47045 * 180.02562 * 26 23 22 49 49 H 1.09001 * 109.46973 * 299.99757 * 26 23 22 50 50 H 1.09005 * 108.94774 * 162.82293 * 27 19 18 51 51 H 1.09005 * 108.94772 * 281.44681 * 27 19 18 52 52 H 1.09001 * 109.36871 * 27.95538 * 28 14 12 53 53 H 1.08999 * 109.36287 * 268.33990 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1269 2.8776 -1.6727 7 7 3.5550 3.6171 -0.6730 8 14 3.4375 3.4172 -3.4339 9 1 2.3077 4.2609 -3.8997 10 1 4.6982 4.1995 -3.4968 11 1 3.5537 2.2203 -4.3052 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 1 0.7574 -2.5300 -0.8896 16 6 2.3766 -3.6322 -0.0005 17 6 1.8464 -4.8822 -0.5664 18 6 0.6566 -5.3946 0.2822 19 7 -0.4879 -4.5342 0.0820 20 6 -1.3430 -4.8189 -0.9201 21 8 -2.3127 -4.1119 -1.1107 22 8 -1.1227 -5.8868 -1.7100 23 6 -2.0845 -6.1326 -2.7696 24 6 -2.1260 -4.9269 -3.7105 25 6 -1.6709 -7.3789 -3.5548 26 6 -3.4705 -6.3513 -2.1596 27 6 -0.7583 -3.3564 0.9296 28 6 0.5204 -2.5541 1.2330 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0325 4.4427 -0.8504 35 1 2.6873 -3.8219 1.0269 36 1 3.2529 -3.3358 -0.5768 37 1 2.6335 -5.6361 -0.5764 38 1 1.5094 -4.6989 -1.5867 39 1 0.9340 -5.3904 1.3362 40 1 0.4045 -6.4105 -0.0224 41 1 -1.1386 -4.7710 -4.1451 42 1 -2.8483 -5.1111 -4.5057 43 1 -2.4208 -4.0392 -3.1509 44 1 -1.6418 -8.2377 -2.8842 45 1 -2.3932 -7.5636 -4.3499 46 1 -0.6834 -7.2235 -3.9893 47 1 -3.7654 -5.4637 -1.5999 48 1 -4.1925 -6.5362 -2.9550 49 1 -3.4410 -7.2103 -1.4893 50 1 -1.4703 -2.7084 0.4184 51 1 -1.1978 -3.6902 1.8696 52 1 0.2485 -1.5477 1.5512 53 1 1.0754 -3.0462 2.0317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843774085.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:30 Heat of formation + Delta-G solvation = -137.001269 kcal Electronic energy + Delta-G solvation = -32234.459391 eV Core-core repulsion = 28105.556312 eV Total energy + Delta-G solvation = -4128.903079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.09871 -41.17257 -39.24485 -37.60622 -36.72773 -35.47802 -34.79937 -34.36359 -33.50979 -29.91643 -28.46555 -28.32061 -28.25005 -27.28902 -26.65899 -24.89522 -24.07890 -22.01919 -21.69474 -20.23438 -19.89789 -18.80775 -18.68812 -17.88040 -17.78119 -17.33729 -17.04646 -16.74307 -16.43618 -15.93958 -15.63121 -15.47655 -15.20085 -14.96337 -14.58948 -14.43749 -14.30845 -14.19479 -14.00016 -13.56226 -13.46815 -13.44181 -13.28998 -13.07696 -13.02164 -12.89494 -12.85630 -12.80482 -12.60353 -12.50240 -12.41444 -12.25591 -12.19606 -12.07460 -11.84331 -11.76848 -11.65739 -11.52177 -11.31382 -10.94691 -10.67255 -10.52148 -9.68605 -9.45446 -8.25912 -6.40797 1.20805 1.32989 1.35775 1.46196 1.79191 1.82735 2.27704 2.41801 2.89846 3.03235 3.54997 3.64014 3.80424 3.80984 3.85532 3.99768 4.00324 4.09466 4.19602 4.25344 4.42395 4.45268 4.54498 4.61379 4.63118 4.65733 4.73441 4.74526 4.80837 4.81448 4.87714 4.89242 4.92691 4.93609 4.97104 5.03911 5.12117 5.16370 5.18104 5.20707 5.32328 5.33184 5.37476 5.40473 5.52341 5.54008 5.63956 5.81161 6.03176 6.35959 6.65771 6.75440 7.24683 7.34619 7.45201 8.81067 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.003011 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.872933 B = 9295.694325 C =10046.075631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.608 5.608 3 C 0.260 3.740 4 C -0.546 4.546 5 H 0.047 0.953 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.497 3.503 13 O -0.595 6.595 14 C -0.083 4.083 15 H 0.085 0.915 16 C -0.102 4.102 17 C -0.124 4.124 18 C 0.115 3.885 19 N -0.586 5.586 20 C 0.642 3.358 21 O -0.593 6.593 22 O -0.362 6.362 23 C 0.126 3.874 24 C -0.182 4.182 25 C -0.135 4.135 26 C -0.177 4.177 27 C 0.134 3.866 28 C -0.127 4.127 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.098 0.902 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.086 0.914 49 H 0.065 0.935 50 H 0.085 0.915 51 H 0.098 0.902 52 H 0.092 0.908 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.627 -25.163 0.747 29.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.339 5.339 3 C 0.138 3.862 4 C -0.584 4.584 5 H 0.066 0.934 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.287 3.713 13 O -0.476 6.476 14 C -0.104 4.104 15 H 0.103 0.897 16 C -0.140 4.140 17 C -0.162 4.162 18 C -0.007 4.007 19 N -0.325 5.325 20 C 0.397 3.603 21 O -0.484 6.484 22 O -0.277 6.277 23 C 0.089 3.911 24 C -0.239 4.239 25 C -0.192 4.192 26 C -0.234 4.234 27 C 0.014 3.986 28 C -0.165 4.165 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.084 0.916 50 H 0.103 0.897 51 H 0.116 0.884 52 H 0.110 0.890 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.241 -24.802 0.707 28.608 hybrid contribution 0.623 1.184 -0.991 1.665 sum -13.618 -23.618 -0.284 27.264 Atomic orbital electron populations 1.22008 0.78343 1.03241 1.02584 1.48142 1.08076 1.06472 1.71189 1.18754 0.91147 0.80385 0.95876 1.21688 1.37046 1.06638 0.93076 0.93440 1.25842 0.94812 0.96353 1.02004 1.70044 1.38781 1.14805 1.32945 0.85433 0.78254 0.78162 0.79076 1.18728 1.20259 1.20073 1.21386 0.87748 0.86597 0.75618 1.90612 1.16572 1.88019 1.52424 1.20693 0.97515 0.90968 1.01266 0.89675 1.20304 0.97322 0.93549 1.02833 1.21187 0.99123 0.96868 0.99044 1.21753 0.83792 0.93438 1.01745 1.46808 1.25526 1.29639 1.30572 1.18343 0.82292 0.79899 0.79791 1.90882 1.31278 1.52763 1.73488 1.86323 1.53499 1.44822 1.43049 1.22340 0.87592 0.96719 0.84410 1.22481 1.02693 0.98731 1.00012 1.21864 1.03122 0.94373 0.99833 1.22445 0.95570 1.02884 1.02473 1.21894 0.96567 0.85279 0.94909 1.21995 0.95790 1.02462 0.96208 0.89985 0.91830 0.90286 0.95652 0.98217 0.92290 0.90622 0.93894 0.88359 0.93487 0.87778 0.88560 0.92805 0.89334 0.91993 0.90742 0.88311 0.91670 0.91849 0.89491 0.91608 0.89662 0.88351 0.88971 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.57 8.91 127.77 1.14 3.71 16 2 N -0.61 -26.69 2.81 -851.14 -2.39 -29.08 16 3 C 0.26 14.40 5.16 85.63 0.44 14.85 16 4 C -0.55 -32.59 9.39 25.60 0.24 -32.35 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 6 C 0.01 0.54 5.46 84.66 0.46 1.00 16 7 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 8 Si 0.97 46.10 29.54 68.60 2.03 48.12 16 9 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 C 0.50 21.34 6.98 87.66 0.61 21.95 16 13 O -0.59 -31.60 15.02 -3.04 -0.05 -31.65 16 14 C -0.08 -2.44 1.35 -12.37 -0.02 -2.46 16 15 H 0.09 2.62 6.74 -2.39 -0.02 2.61 16 16 C -0.10 -2.70 4.34 28.61 0.12 -2.58 16 17 C -0.12 -2.40 5.73 29.39 0.17 -2.23 16 18 C 0.12 1.75 5.39 87.37 0.47 2.22 16 19 N -0.59 -11.36 2.24 -948.46 -2.12 -13.48 16 20 C 0.64 15.14 7.64 129.79 0.99 16.13 16 21 O -0.59 -16.68 11.16 19.79 0.22 -16.46 16 22 O -0.36 -7.61 8.57 -55.51 -0.48 -8.09 16 23 C 0.13 2.21 1.13 -10.79 -0.01 2.19 16 24 C -0.18 -3.59 8.37 71.98 0.60 -2.99 16 25 C -0.13 -1.55 8.85 71.98 0.64 -0.91 16 26 C -0.18 -2.89 8.37 71.98 0.60 -2.28 16 27 C 0.13 2.40 6.07 86.50 0.53 2.92 16 28 C -0.13 -2.66 4.43 30.24 0.13 -2.52 16 29 H 0.08 2.07 6.79 -2.39 -0.02 2.06 16 30 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.08 2.21 5.83 -2.39 -0.01 2.20 16 32 H 0.03 1.41 8.07 -2.39 -0.02 1.40 16 33 H 0.00 -0.02 7.42 -2.38 -0.02 -0.04 16 34 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 35 H 0.08 1.79 7.36 -2.39 -0.02 1.77 16 36 H 0.04 1.46 7.00 -2.39 -0.02 1.44 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 1.15 8.07 -2.39 -0.02 1.13 16 40 H 0.10 1.27 7.25 -2.38 -0.02 1.25 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 1.77 6.67 -2.38 -0.02 1.75 16 51 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 52 H 0.09 2.03 4.82 -2.39 -0.01 2.02 16 53 H 0.09 1.66 7.32 -2.39 -0.02 1.64 16 Total: -1.00 -79.46 402.22 5.51 -73.96 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.89 Total: 16.66 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 7.12 Total: 16.64 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -4.23 Total: -99.19 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -0.30 Total: -56.20 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -79.46 5.51 -73.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843774085.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.044 kcal (2) G-P(sol) polarization free energy of solvation -79.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds