Wall clock time and date at job start Sat Apr 11 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46949 * 2 1 4 4 C 1.52990 * 109.47013 * 240.00091 * 2 1 3 5 5 O 1.45194 * 109.47218 * 119.99736 * 2 1 3 6 6 C 1.34233 * 117.00118 * 60.00403 * 5 2 1 7 7 O 1.20827 * 119.99535 * 359.97438 * 6 5 2 8 8 C 1.50702 * 120.00117 * 180.02562 * 6 5 2 9 9 C 1.52998 * 109.46910 * 186.29730 * 8 6 5 10 10 H 1.08996 * 109.46097 * 305.68361 * 9 8 6 11 11 C 1.53039 * 109.46194 * 65.66365 * 9 8 6 12 12 C 1.53122 * 109.30788 * 179.16337 * 11 9 8 13 13 C 1.53119 * 109.15878 * 302.40588 * 12 11 9 14 14 C 1.53034 * 109.31156 * 57.59821 * 13 12 11 15 15 N 1.46843 * 109.45431 * 185.71348 * 9 8 6 16 16 C 1.46898 * 111.00030 * 54.14660 * 15 9 8 17 17 C 1.50703 * 109.47144 * 64.38371 * 16 15 9 18 18 O 1.21280 * 119.99756 * 354.42526 * 17 16 15 19 19 N 1.34778 * 119.99930 * 174.43212 * 17 16 15 20 20 C 1.46506 * 119.99698 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47167 * 179.97438 * 20 19 17 22 22 H 1.08010 * 119.99880 * 359.97438 * 21 20 19 23 23 C 1.37870 * 120.00457 * 179.97438 * 21 20 19 24 24 N 1.31524 * 119.99608 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00412 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47132 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47198 * 120.00139 * 25 23 21 28 28 H 1.48505 * 109.47438 * 240.00155 * 25 23 21 29 29 H 1.09010 * 109.47063 * 299.99826 * 1 2 3 30 30 H 1.08994 * 109.47514 * 59.99783 * 1 2 3 31 31 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47386 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47594 * 299.99907 * 3 2 1 34 34 H 1.09004 * 109.47759 * 60.00226 * 3 2 1 35 35 H 1.09006 * 109.47458 * 299.99419 * 4 2 1 36 36 H 1.09004 * 109.47545 * 60.00106 * 4 2 1 37 37 H 1.09002 * 109.47301 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.47372 * 66.29751 * 8 6 5 39 39 H 1.08997 * 109.46958 * 306.29315 * 8 6 5 40 40 H 1.08995 * 109.50209 * 299.12314 * 11 9 8 41 41 H 1.08999 * 109.50472 * 59.20642 * 11 9 8 42 42 H 1.09001 * 109.52400 * 62.27076 * 12 11 9 43 43 H 1.08997 * 109.52046 * 182.45874 * 12 11 9 44 44 H 1.08999 * 109.47621 * 297.65447 * 13 12 11 45 45 H 1.09002 * 109.53595 * 177.57531 * 13 12 11 46 46 H 1.09003 * 109.46414 * 180.82869 * 14 13 12 47 47 H 1.08995 * 109.45575 * 60.85003 * 14 13 12 48 48 H 1.09000 * 109.47407 * 184.37873 * 16 15 9 49 49 H 1.09004 * 109.47273 * 304.37877 * 16 15 9 50 50 H 0.96994 * 120.00388 * 359.97438 * 19 17 16 51 51 H 1.09000 * 109.46731 * 299.99996 * 20 19 17 52 52 H 1.08998 * 109.46954 * 59.99636 * 20 19 17 53 53 H 0.96997 * 119.99760 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7433 2.5442 9 6 1.7041 -4.2092 2.3986 10 1 0.6306 -4.2676 2.2191 11 6 2.4530 -4.8355 1.2201 12 6 2.0525 -6.3078 1.0906 13 6 2.3612 -7.0301 2.4049 14 6 1.6149 -6.3401 3.5490 15 7 2.0342 -4.9352 3.6316 16 6 1.4427 -4.2774 4.8043 17 6 -0.0602 -4.3317 4.7061 18 8 -0.5869 -4.7745 3.7074 19 7 -0.8188 -3.8882 5.7280 20 6 -2.2798 -3.9406 5.6322 21 6 -2.8862 -3.3899 6.8971 22 1 -2.2472 -3.0367 7.6930 23 6 -4.2566 -3.3370 7.0384 24 7 -5.0347 -3.7677 6.0694 25 14 -5.0082 -2.6538 8.6060 26 1 -3.9258 -2.2385 9.5339 27 1 -5.8557 -1.4794 8.2777 28 1 -5.8409 -3.6998 9.2526 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 1.6624 -2.3249 3.4420 39 1 3.2027 -2.6780 2.6226 40 1 2.1956 -4.3063 0.3027 41 1 3.5270 -4.7644 1.3922 42 1 0.9855 -6.3777 0.8791 43 1 2.6164 -6.7686 0.2797 44 1 3.4337 -6.9941 2.5961 45 1 2.0388 -8.0689 2.3344 46 1 1.8447 -6.8434 4.4882 47 1 0.5419 -6.3886 3.3639 48 1 1.7662 -4.7899 5.7102 49 1 1.7671 -3.2373 4.8397 50 1 -0.3975 -3.5344 6.5268 51 1 -2.6096 -3.3446 4.7812 52 1 -2.5982 -4.9742 5.4970 53 1 -5.9988 -3.7308 6.1690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844424619.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:42 Heat of formation + Delta-G solvation = -153.732164 kcal Electronic energy + Delta-G solvation = -31792.789108 eV Core-core repulsion = 27663.160522 eV Total energy + Delta-G solvation = -4129.628586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11727 -41.27057 -39.24169 -37.95693 -36.15128 -35.15500 -34.58835 -34.33771 -33.45908 -30.06520 -29.11043 -28.42374 -28.30923 -27.80664 -24.91448 -24.32475 -23.67040 -22.09577 -21.39942 -20.74253 -20.57634 -18.87011 -18.37692 -17.60163 -17.39147 -17.30439 -17.23253 -16.58612 -16.50237 -15.99273 -15.77525 -15.51992 -15.45924 -15.03763 -14.81788 -14.62596 -14.37491 -14.20347 -14.01081 -13.85682 -13.62849 -13.39315 -13.24285 -13.11301 -12.96640 -12.90370 -12.86949 -12.79999 -12.75926 -12.64787 -12.35928 -12.24621 -12.16526 -11.75162 -11.62750 -11.48208 -11.46716 -11.36533 -11.30015 -11.15225 -10.88074 -10.83147 -9.80838 -9.16436 -8.31939 -6.49232 1.21128 1.40843 1.41975 1.55661 1.63227 1.73423 2.30738 2.61950 2.88187 3.02881 3.57246 3.70982 3.73382 3.77507 3.86172 3.93473 3.97533 4.04211 4.17258 4.25898 4.35945 4.45324 4.53321 4.55338 4.56659 4.63112 4.71471 4.72268 4.79701 4.83154 4.85046 4.85781 4.94475 4.98763 5.04921 5.09313 5.12699 5.14945 5.20112 5.22316 5.23523 5.26927 5.28483 5.45644 5.51276 5.59304 5.70137 5.82573 5.94047 6.01153 6.63149 6.83359 6.90045 7.21114 7.50583 8.80218 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.003384 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.169838 B = 8273.347426 C =10557.792407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 C -0.135 4.135 4 C -0.177 4.177 5 O -0.355 6.355 6 C 0.464 3.536 7 O -0.522 6.522 8 C -0.111 4.111 9 C 0.080 3.920 10 H 0.043 0.957 11 C -0.104 4.104 12 C -0.119 4.119 13 C -0.105 4.105 14 C 0.037 3.963 15 N -0.489 5.489 16 C 0.031 3.969 17 C 0.458 3.542 18 O -0.591 6.591 19 N -0.707 5.707 20 C 0.269 3.731 21 C -0.554 4.554 22 H 0.086 0.914 23 C 0.001 3.999 24 N -0.933 5.933 25 Si 0.985 3.015 26 H -0.250 1.250 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.029 0.971 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.026 0.974 48 H 0.136 0.864 49 H 0.134 0.866 50 H 0.409 0.591 51 H -0.021 1.021 52 H -0.018 1.018 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.480 5.689 -8.426 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.071 3.929 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.272 6.272 6 C 0.307 3.693 7 O -0.411 6.411 8 C -0.148 4.148 9 C -0.028 4.028 10 H 0.061 0.939 11 C -0.142 4.142 12 C -0.157 4.157 13 C -0.143 4.143 14 C -0.091 4.091 15 N -0.211 5.211 16 C -0.100 4.100 17 C 0.244 3.756 18 O -0.473 6.473 19 N -0.357 5.357 20 C 0.146 3.854 21 C -0.591 4.591 22 H 0.104 0.896 23 C -0.198 4.198 24 N -0.572 5.572 25 Si 0.808 3.192 26 H -0.173 1.173 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.160 0.840 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.048 0.952 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.045 0.955 48 H 0.153 0.847 49 H 0.152 0.848 50 H 0.245 0.755 51 H -0.003 1.003 52 H 0.000 1.000 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.243 5.229 -9.403 24.708 hybrid contribution -2.409 0.142 0.508 2.466 sum 19.834 5.370 -8.894 22.391 Atomic orbital electron populations 1.22490 0.95179 1.03029 1.03455 1.22462 0.93717 0.93828 0.82895 1.21862 1.02713 0.90541 1.04022 1.22430 1.02115 1.01826 0.97025 1.86533 1.69698 1.24999 1.45988 1.23827 0.76949 0.80827 0.87651 1.90598 1.35728 1.70395 1.44407 1.21589 1.05963 0.93268 0.94005 1.21528 0.99384 0.90946 0.90962 0.93921 1.21606 1.00548 0.95630 0.96412 1.21534 0.99857 0.95803 0.98503 1.21521 1.01399 0.98411 0.92923 1.22333 0.98329 0.88096 1.00361 1.62500 1.54968 1.02325 1.01355 1.22682 0.85448 1.04513 0.97365 1.22986 0.92744 0.77242 0.82594 1.90617 1.76266 1.48157 1.32226 1.46361 1.07639 1.62253 1.19490 1.18438 0.76878 0.94012 0.96061 1.21667 0.92655 1.42866 1.01948 0.89600 1.26108 0.97661 0.95181 1.00846 1.70163 1.04976 1.47158 1.34903 0.85104 0.78514 0.77685 0.77883 1.17307 1.20565 1.20486 0.92577 0.89040 0.92959 0.90436 0.88417 0.91599 0.92357 0.89342 0.90911 0.87459 0.84038 0.92190 0.89541 0.95197 0.90130 0.89416 0.91041 0.89711 0.95549 0.84655 0.84834 0.75524 1.00306 1.00013 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.53 8.37 71.98 0.60 -3.93 16 2 C 0.11 2.27 1.13 -10.80 -0.01 2.26 16 3 C -0.13 -1.93 8.85 71.98 0.64 -1.29 16 4 C -0.18 -3.45 8.37 71.98 0.60 -2.85 16 5 O -0.35 -8.80 9.89 -51.45 -0.51 -9.31 16 6 C 0.46 13.02 6.88 71.24 0.49 13.51 16 7 O -0.52 -17.78 9.76 21.96 0.21 -17.56 16 8 C -0.11 -2.62 5.05 29.85 0.15 -2.47 16 9 C 0.08 2.31 1.17 44.94 0.05 2.36 16 10 H 0.04 1.74 5.37 -2.39 -0.01 1.72 16 11 C -0.10 -2.63 5.12 30.65 0.16 -2.48 16 12 C -0.12 -3.01 6.00 30.67 0.18 -2.82 16 13 C -0.10 -2.38 6.09 30.65 0.19 -2.19 16 14 C 0.04 1.02 5.00 86.32 0.43 1.45 16 15 N -0.49 -12.54 4.69 -875.67 -4.11 -16.65 16 16 C 0.03 0.77 5.45 85.56 0.47 1.24 16 17 C 0.46 17.64 7.22 87.66 0.63 18.27 16 18 O -0.59 -28.69 11.65 -3.03 -0.04 -28.73 16 19 N -0.71 -29.28 5.55 -466.78 -2.59 -31.87 16 20 C 0.27 14.97 5.43 85.63 0.46 15.43 16 21 C -0.55 -30.24 9.28 25.60 0.24 -30.00 16 22 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 23 C 0.00 0.07 5.46 84.65 0.46 0.54 16 24 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 25 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 26 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 29 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.65 5.89 -2.39 -0.01 1.64 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.48 5.89 -2.38 -0.01 1.46 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 2.47 5.90 -2.39 -0.01 2.45 16 39 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 1.68 6.27 -2.39 -0.01 1.67 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 47 H 0.03 1.00 5.69 -2.39 -0.01 0.98 16 48 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.13 2.56 5.83 -2.39 -0.01 2.55 16 50 H 0.41 13.66 8.32 -92.71 -0.77 12.88 16 51 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 52 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 53 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -77.78 404.02 1.16 -76.62 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.13 Total: 32.91 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.75 Total: 7.03 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -6.41 Total: -105.53 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -0.33 Total: -55.61 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -77.78 1.16 -76.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844424619.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.112 kcal (2) G-P(sol) polarization free energy of solvation -77.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds