Wall clock time and date at job start Sat Apr 11 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00344 * 2 1 4 4 C 1.52998 * 109.47298 * 270.00714 * 3 2 1 5 5 C 1.50704 * 109.46827 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00166 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99769 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.63038 * 0.02562 * 7 5 4 9 9 C 1.53187 * 108.77625 * 126.37031 * 8 7 5 10 10 C 1.53046 * 109.31363 * 54.63376 * 9 8 7 11 11 C 1.53046 * 109.53579 * 298.63645 * 10 9 8 12 12 H 1.08995 * 109.49499 * 301.40973 * 11 10 9 13 13 C 1.50700 * 109.49623 * 181.31259 * 11 10 9 14 14 H 1.08003 * 120.00020 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00099 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00019 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99904 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47262 * 90.00545 * 17 15 13 19 19 H 1.48503 * 109.47135 * 210.00047 * 17 15 13 20 20 H 1.48500 * 109.47277 * 330.00092 * 17 15 13 21 21 C 1.46921 * 120.63025 * 179.97438 * 7 5 4 22 22 C 1.34781 * 119.99851 * 180.02562 * 2 1 3 23 23 O 1.21506 * 119.99835 * 179.97438 * 22 2 1 24 24 O 1.34638 * 119.99950 * 359.97438 * 22 2 1 25 25 C 1.45204 * 117.00075 * 179.97438 * 24 22 2 26 26 C 1.52998 * 109.46457 * 60.00346 * 25 24 22 27 27 C 1.52996 * 109.47046 * 180.02562 * 25 24 22 28 28 C 1.52995 * 109.47211 * 300.00632 * 25 24 22 29 29 H 1.08996 * 109.47064 * 89.99364 * 1 2 3 30 30 H 1.09002 * 109.47132 * 209.99948 * 1 2 3 31 31 H 1.09002 * 109.46587 * 329.99468 * 1 2 3 32 32 H 1.09000 * 109.47325 * 149.99662 * 3 2 1 33 33 H 1.08998 * 109.46564 * 30.00621 * 3 2 1 34 34 H 1.08994 * 109.47496 * 59.99591 * 4 3 2 35 35 H 1.09000 * 109.46758 * 299.98900 * 4 3 2 36 36 H 1.09000 * 109.58351 * 246.16146 * 8 7 5 37 37 H 1.09002 * 109.58642 * 6.43802 * 8 7 5 38 38 H 1.09001 * 109.49833 * 294.68424 * 9 8 7 39 39 H 1.08996 * 109.49835 * 174.58430 * 9 8 7 40 40 H 1.08993 * 109.46296 * 178.61734 * 10 9 8 41 41 H 1.09000 * 109.45696 * 58.65290 * 10 9 8 42 42 H 0.96996 * 120.00301 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.58905 * 113.84216 * 21 7 5 44 44 H 1.09008 * 109.58585 * 353.41416 * 21 7 5 45 45 H 1.09005 * 109.47553 * 60.00206 * 26 25 24 46 46 H 1.09005 * 109.46874 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.47280 * 299.99641 * 26 25 24 48 48 H 1.09003 * 109.46887 * 60.00482 * 27 25 24 49 49 H 1.09005 * 109.46879 * 180.02562 * 27 25 24 50 50 H 1.08998 * 109.47575 * 300.00147 * 27 25 24 51 51 H 1.08999 * 109.47525 * 59.99747 * 28 25 24 52 52 H 1.08993 * 109.47307 * 179.97438 * 28 25 24 53 53 H 1.09003 * 109.47249 * 299.99840 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2066 3.0152 -1.4423 6 8 3.5099 3.5403 -0.3920 7 7 3.5441 3.5986 -2.6095 8 6 3.1832 2.9750 -3.8900 9 6 2.4266 3.9993 -4.7414 10 6 3.2714 5.2682 -4.8764 11 6 3.5104 5.8737 -3.4912 12 1 2.5525 6.0993 -3.0227 13 6 4.3150 7.1405 -3.6280 14 1 4.6249 7.4805 -4.6051 15 6 4.6547 7.8660 -2.5058 16 7 4.2770 7.4522 -1.3160 17 14 5.6515 9.4367 -2.6755 18 1 4.7321 10.5912 -2.8394 19 1 6.4789 9.6319 -1.4579 20 1 6.5360 9.3356 -3.8641 21 6 4.2788 4.8708 -2.6256 22 6 2.1389 -1.1673 -0.0005 23 8 3.3540 -1.1673 -0.0010 24 8 1.4657 -2.3332 -0.0005 25 6 2.2565 -3.5511 -0.0017 26 6 3.1399 -3.5864 1.2469 27 6 1.3244 -4.7643 -0.0021 28 6 3.1382 -3.5854 -1.2515 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 3.1500 1.1383 0.5139 33 1 1.6086 2.0283 0.5139 34 1 1.5001 1.8408 -1.9562 35 1 3.0417 0.9509 -1.9563 36 1 4.0877 2.6626 -4.4120 37 1 2.5485 2.1077 -3.7080 38 1 1.4789 4.2426 -4.2611 39 1 2.2371 3.5815 -5.7302 40 1 2.7460 5.9895 -5.5022 41 1 4.2289 5.0199 -5.3342 42 1 4.5162 7.9624 -0.5265 43 1 5.2727 4.7136 -3.0443 44 1 4.3647 5.2561 -1.6095 45 1 2.5117 -3.5620 2.1374 46 1 3.7333 -4.5009 1.2464 47 1 3.8040 -2.7221 1.2468 48 1 0.6953 -4.7388 -0.8919 49 1 1.9181 -5.6785 -0.0026 50 1 0.6959 -4.7401 0.8881 51 1 3.8023 -2.7210 -1.2516 52 1 3.7322 -4.4993 -1.2521 53 1 2.5088 -3.5601 -2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:17 Heat of formation + Delta-G solvation = -144.979906 kcal Electronic energy + Delta-G solvation = -31129.962253 eV Core-core repulsion = 27000.713194 eV Total energy + Delta-G solvation = -4129.249059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90399 -41.03000 -38.89059 -38.24946 -36.72053 -35.32542 -34.95258 -33.51291 -32.45028 -31.36298 -28.33647 -28.27474 -27.91106 -27.16080 -26.55208 -25.00592 -23.42435 -22.46951 -21.32490 -20.36975 -19.70781 -18.93424 -18.57849 -18.02884 -17.46974 -17.40362 -16.72818 -16.56056 -16.40779 -16.04027 -15.46530 -15.40632 -15.16170 -14.76860 -14.74988 -14.48823 -14.36612 -14.30413 -14.08882 -13.61773 -13.45691 -13.36420 -13.24060 -13.13784 -13.06053 -12.89145 -12.82935 -12.80697 -12.65872 -12.44614 -12.28904 -12.25626 -12.22404 -12.10141 -11.80509 -11.63096 -11.35925 -11.13171 -11.06683 -10.94517 -10.63913 -10.50341 -9.86141 -9.39903 -8.11351 -6.28082 1.07605 1.39393 1.40844 1.51247 1.72552 1.73939 2.24402 2.42189 2.87587 3.17069 3.67382 3.78717 3.82895 3.88520 3.90788 3.98590 4.08163 4.18137 4.29263 4.35938 4.43650 4.50770 4.60742 4.64251 4.65911 4.68328 4.76955 4.79175 4.79757 4.82364 4.86761 4.87705 4.91751 4.91954 4.96293 5.10855 5.15330 5.26052 5.29122 5.31385 5.32518 5.37193 5.42861 5.48830 5.55429 5.64695 5.90249 6.00325 6.28417 6.33393 6.68273 6.84826 7.26246 7.33773 7.42281 8.92084 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.002280 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.313069 B =12276.999922 C =12676.443789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.596 5.596 3 C 0.155 3.845 4 C -0.135 4.135 5 C 0.501 3.499 6 O -0.593 6.593 7 N -0.611 5.611 8 C 0.103 3.897 9 C -0.125 4.125 10 C -0.107 4.107 11 C 0.039 3.961 12 H -0.011 1.011 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.009 3.991 16 N -0.915 5.915 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.263 1.263 21 C 0.124 3.876 22 C 0.645 3.355 23 O -0.593 6.593 24 O -0.360 6.360 25 C 0.124 3.876 26 C -0.181 4.181 27 C -0.133 4.133 28 C -0.180 4.180 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.259 0.741 43 H 0.031 0.969 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.057 0.943 52 H 0.088 0.912 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.717 -25.837 -1.601 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.336 5.336 3 C 0.032 3.968 4 C -0.176 4.176 5 C 0.290 3.710 6 O -0.474 6.474 7 N -0.343 5.343 8 C -0.019 4.019 9 C -0.163 4.163 10 C -0.145 4.145 11 C 0.020 3.980 12 H 0.007 0.993 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.191 4.191 16 N -0.554 5.554 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.187 1.187 21 C 0.002 3.998 22 C 0.400 3.600 23 O -0.484 6.484 24 O -0.274 6.274 25 C 0.087 3.913 26 C -0.238 4.238 27 C -0.190 4.190 28 C -0.237 4.237 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.119 0.881 50 H 0.089 0.911 51 H 0.076 0.924 52 H 0.107 0.893 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.195 -25.622 -0.883 27.590 hybrid contribution 0.983 1.511 0.360 1.838 sum -9.211 -24.111 -0.523 25.816 Atomic orbital electron populations 1.22053 0.76117 1.04591 1.03657 1.46805 1.08666 1.02453 1.75688 1.21017 0.97631 0.82643 0.95503 1.21922 1.02280 0.93384 1.00016 1.21166 0.79611 0.87061 0.83167 1.90691 1.57250 1.66781 1.32673 1.48542 1.55623 1.23440 1.06655 1.22002 1.00451 0.96253 0.83183 1.21901 0.98188 0.95304 1.00873 1.21529 0.99267 0.96707 0.96951 1.18883 0.94077 0.92602 0.92411 0.99263 1.21529 1.34767 1.08083 0.93063 0.92075 1.25895 0.97048 1.01009 0.95101 1.70080 1.46824 1.40026 0.98424 0.85574 0.78788 0.79815 0.77617 1.19956 1.21430 1.18725 1.21676 0.92832 0.81882 1.03457 1.18225 0.83794 0.81907 0.76078 1.90919 1.13700 1.87233 1.56570 1.86309 1.41037 1.13672 1.86415 1.22419 0.91663 0.80896 0.96290 1.22479 1.00471 1.04078 0.96782 1.21863 0.99324 0.94012 1.03790 1.22463 1.00447 1.04102 0.96673 0.90757 0.89695 0.89391 0.91721 0.88498 0.85857 0.88079 0.90769 0.87196 0.92538 0.87828 0.92877 0.92789 0.93145 0.95086 0.90507 0.91946 0.89178 0.92505 0.90898 0.88148 0.91124 0.92377 0.89276 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.49 127.77 1.34 2.43 16 2 N -0.60 -13.43 2.87 -977.25 -2.81 -16.23 16 3 C 0.15 4.26 4.74 86.38 0.41 4.67 16 4 C -0.14 -3.67 4.37 29.85 0.13 -3.54 16 5 C 0.50 20.00 7.70 87.66 0.67 20.67 16 6 O -0.59 -29.91 15.39 -3.01 -0.05 -29.95 16 7 N -0.61 -24.44 2.97 -819.01 -2.43 -26.88 16 8 C 0.10 2.89 6.34 86.36 0.55 3.44 16 9 C -0.12 -3.55 6.08 30.67 0.19 -3.37 16 10 C -0.11 -4.10 5.11 30.63 0.16 -3.95 16 11 C 0.04 2.00 2.25 -11.48 -0.03 1.97 16 12 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 13 C -0.54 -29.78 8.56 25.60 0.22 -29.57 16 14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 15 C 0.01 0.50 5.30 84.65 0.45 0.95 16 16 N -0.91 -56.19 11.40 21.45 0.24 -55.94 16 17 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 21 C 0.12 6.29 5.40 86.35 0.47 6.76 16 22 C 0.64 16.65 7.70 129.79 1.00 17.65 16 23 O -0.59 -19.01 11.46 19.82 0.23 -18.78 16 24 O -0.36 -7.58 8.71 -55.47 -0.48 -8.06 16 25 C 0.12 2.11 1.13 -10.80 -0.01 2.10 16 26 C -0.18 -3.28 8.37 71.98 0.60 -2.68 16 27 C -0.13 -1.31 8.85 71.98 0.64 -0.68 16 28 C -0.18 -3.13 8.37 71.98 0.60 -2.53 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.08 7.38 -2.39 -0.02 1.06 16 31 H 0.09 1.06 7.89 -2.39 -0.02 1.04 16 32 H 0.06 2.20 7.38 -2.39 -0.02 2.19 16 33 H 0.10 2.60 7.85 -2.39 -0.02 2.58 16 34 H 0.12 2.55 7.69 -2.39 -0.02 2.53 16 35 H 0.10 2.60 7.94 -2.39 -0.02 2.59 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.11 2.25 5.93 -2.39 -0.01 2.23 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 4.66 5.13 -2.38 -0.01 4.65 16 45 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.06 1.43 5.88 -2.39 -0.01 1.42 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 52 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -78.07 411.58 4.98 -73.09 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.87 Total: 21.60 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 7.38 Total: 14.35 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -5.00 Total: -99.05 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.30 Total: -56.80 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -78.07 4.98 -73.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.886 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds