Wall clock time and date at job start Sat Apr 11 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47306 * 2 1 4 4 C 1.52995 * 109.47352 * 239.99474 * 2 1 3 5 5 O 1.45212 * 109.46955 * 119.99900 * 2 1 3 6 6 C 1.34632 * 116.99925 * 63.48798 * 5 2 1 7 7 O 1.21510 * 119.99946 * 354.93904 * 6 5 2 8 8 N 1.34773 * 119.99725 * 174.94879 * 6 5 2 9 9 C 1.47426 * 125.65063 * 4.95057 * 8 6 5 10 10 C 1.54903 * 104.83436 * 155.89466 * 9 8 6 11 11 C 1.55161 * 101.58281 * 37.00671 * 10 9 8 12 12 C 1.47021 * 125.64792 * 184.97523 * 8 6 5 13 13 H 1.09002 * 110.01542 * 300.52790 * 12 8 6 14 14 C 1.53004 * 109.88239 * 61.61796 * 12 8 6 15 15 N 1.46900 * 109.47111 * 179.28879 * 14 12 8 16 16 C 1.47442 * 110.99764 * 55.62643 * 15 14 12 17 17 C 1.54321 * 107.23516 * 123.25631 * 16 15 14 18 18 C 1.55432 * 103.04457 * 22.28156 * 17 16 15 19 19 O 1.42900 * 111.00478 * 82.39167 * 18 17 16 20 20 C 1.50706 * 111.10552 * 206.29965 * 18 17 16 21 21 H 1.08001 * 120.00220 * 112.16951 * 20 18 17 22 22 C 1.37880 * 119.99560 * 292.17236 * 20 18 17 23 23 N 1.31509 * 120.00090 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99592 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47160 * 60.00074 * 24 22 20 26 26 H 1.48506 * 109.46786 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47223 * 299.99809 * 24 22 20 28 28 C 1.47845 * 110.99615 * 176.46558 * 15 14 12 29 29 H 1.08997 * 109.47486 * 300.00314 * 1 2 3 30 30 H 1.08997 * 109.47157 * 59.99960 * 1 2 3 31 31 H 1.08995 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46982 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46600 * 299.99601 * 3 2 1 34 34 H 1.08995 * 109.47214 * 59.99979 * 3 2 1 35 35 H 1.09000 * 109.47044 * 305.96487 * 4 2 1 36 36 H 1.09006 * 109.46859 * 65.96329 * 4 2 1 37 37 H 1.09000 * 109.47814 * 185.96403 * 4 2 1 38 38 H 1.09002 * 110.36701 * 37.05358 * 9 8 6 39 39 H 1.09003 * 110.45863 * 274.78015 * 9 8 6 40 40 H 1.08996 * 111.00674 * 278.93756 * 10 9 8 41 41 H 1.09006 * 111.04156 * 155.09709 * 10 9 8 42 42 H 1.09002 * 110.72192 * 206.12960 * 11 10 9 43 43 H 1.09004 * 110.87030 * 82.93329 * 11 10 9 44 44 H 1.09003 * 109.46987 * 59.29383 * 14 12 8 45 45 H 1.08996 * 109.47307 * 299.29333 * 14 12 8 46 46 H 1.09003 * 109.88779 * 242.66230 * 16 15 14 47 47 H 1.09004 * 109.89098 * 3.84570 * 16 15 14 48 48 H 1.08998 * 110.70750 * 140.66217 * 17 16 15 49 49 H 1.09003 * 110.70362 * 263.72698 * 17 16 15 50 50 H 0.96698 * 113.99545 * 67.87987 * 19 18 17 51 51 H 0.97003 * 120.00053 * 180.02562 * 23 22 20 52 52 H 1.08996 * 110.37827 * 332.46515 * 28 15 14 53 53 H 1.08996 * 110.37267 * 94.69885 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6845 1.1857 6 6 1.7128 -1.9915 1.3026 7 8 0.9870 -2.5232 0.4859 8 7 2.2162 -2.7101 2.3256 9 6 3.0204 -2.1736 3.4387 10 6 2.8194 -3.1835 4.5960 11 6 2.7755 -4.5315 3.8289 12 6 2.0549 -4.1589 2.5162 13 1 0.9967 -4.4099 2.5901 14 6 2.6872 -4.9116 1.3437 15 7 2.5359 -6.3579 1.5516 16 6 1.1195 -6.7185 1.7455 17 6 0.7638 -7.7684 0.6719 18 6 2.1482 -8.3640 0.2915 19 8 2.5468 -9.3702 1.2246 20 6 2.1372 -8.9081 -1.1139 21 1 2.7210 -8.4260 -1.8841 22 6 1.3818 -10.0212 -1.4163 23 7 0.6706 -10.6078 -0.4785 24 14 1.3677 -10.6951 -3.1584 25 1 2.7471 -11.0800 -3.5515 26 1 0.4848 -11.8876 -3.2207 27 1 0.8604 -9.6540 -4.0878 28 6 3.0610 -7.1169 0.3966 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.5921 -1.7135 -1.3040 36 1 1.7664 -0.1496 -2.1360 37 1 3.1248 -0.8148 -1.1974 38 1 2.6571 -1.1875 3.7283 39 1 4.0725 -2.1222 3.1585 40 1 1.8795 -2.9994 5.1164 41 1 3.6596 -3.1559 5.2899 42 1 2.2035 -5.2737 4.3858 43 1 3.7827 -4.8958 3.6260 44 1 3.7465 -4.6624 1.2810 45 1 2.1907 -4.6238 0.4170 46 1 0.9774 -7.1420 2.7398 47 1 0.4919 -5.8357 1.6231 48 1 0.1139 -8.5389 1.0867 49 1 0.2954 -7.2942 -0.1906 50 1 2.0043 -10.1702 1.1959 51 1 0.1394 -11.3912 -0.6911 52 1 2.9934 -6.5195 -0.5126 53 1 4.0934 -7.4164 0.5771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877605922.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:15 Heat of formation + Delta-G solvation = -141.207115 kcal Electronic energy + Delta-G solvation = -32051.247808 eV Core-core repulsion = 27922.162349 eV Total energy + Delta-G solvation = -4129.085459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.98285 -40.54381 -39.39315 -37.58287 -36.54752 -35.09640 -34.12623 -32.57909 -32.36239 -30.20351 -29.56611 -28.40602 -28.30320 -26.82082 -25.72825 -24.59459 -22.66021 -22.26267 -21.42594 -20.97615 -20.13915 -19.14752 -18.78572 -17.92794 -17.40094 -16.98817 -16.87123 -16.76861 -16.04898 -15.90185 -15.82095 -15.34532 -15.28252 -14.70737 -14.45554 -14.35416 -13.99473 -13.91292 -13.87382 -13.56915 -13.47354 -13.35458 -13.16996 -13.13334 -12.91439 -12.87077 -12.82878 -12.72145 -12.57636 -12.37957 -12.31590 -12.27222 -12.21772 -12.06873 -11.78408 -11.75226 -11.56003 -11.41780 -11.17557 -11.12187 -10.63141 -10.09676 -9.80345 -9.24956 -8.25810 -6.41297 0.99949 1.38780 1.39275 1.47525 1.72409 2.35071 2.78126 2.98328 3.20041 3.63004 3.65857 3.73651 3.75837 3.79847 3.92300 3.96545 4.03286 4.18725 4.21772 4.29246 4.36560 4.45898 4.48017 4.57833 4.61221 4.67370 4.71682 4.72926 4.76749 4.81836 4.82684 4.84094 4.86275 5.00389 5.00702 5.04593 5.10173 5.17104 5.23022 5.24786 5.29352 5.33966 5.41174 5.44770 5.46409 5.49637 5.75397 5.88004 6.12176 6.18889 6.42613 6.62973 7.24660 7.30317 7.50214 8.79870 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.003077 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.563390 B = 9096.836526 C =10600.357428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.125 3.875 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.362 6.362 6 C 0.659 3.341 7 O -0.594 6.594 8 N -0.602 5.602 9 C 0.100 3.900 10 C -0.121 4.121 11 C -0.108 4.108 12 C 0.159 3.841 13 H 0.064 0.936 14 C 0.048 3.952 15 N -0.509 5.509 16 C 0.053 3.947 17 C -0.140 4.140 18 C 0.241 3.759 19 O -0.585 6.585 20 C -0.566 4.566 21 H 0.052 0.948 22 C 0.031 3.969 23 N -0.911 5.911 24 Si 0.961 3.039 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.276 1.276 28 C 0.067 3.933 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.013 0.987 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.034 0.966 50 H 0.376 0.624 51 H 0.271 0.729 52 H 0.037 0.963 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 23.414 8.314 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.089 3.911 3 C -0.189 4.189 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.414 3.586 7 O -0.485 6.485 8 N -0.343 5.343 9 C -0.021 4.021 10 C -0.159 4.159 11 C -0.146 4.146 12 C 0.057 3.943 13 H 0.082 0.918 14 C -0.081 4.081 15 N -0.233 5.233 16 C -0.075 4.075 17 C -0.179 4.179 18 C 0.200 3.800 19 O -0.394 6.394 20 C -0.605 4.605 21 H 0.070 0.930 22 C -0.170 4.170 23 N -0.551 5.551 24 Si 0.786 3.214 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.201 1.201 28 C -0.061 4.061 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.032 0.968 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.227 0.773 51 H 0.081 0.919 52 H 0.055 0.945 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.498 23.585 8.603 25.347 hybrid contribution -1.315 -1.069 -2.339 2.888 sum 2.183 22.516 6.264 23.473 Atomic orbital electron populations 1.22437 0.94093 1.03218 1.03695 1.22422 0.94546 0.92908 0.81254 1.21861 1.02447 0.90041 1.04504 1.22488 1.01352 1.02000 0.98013 1.86299 1.73791 1.20816 1.46752 1.17766 0.78942 0.80915 0.80944 1.90936 1.41180 1.72264 1.44147 1.47386 1.54977 1.08019 1.23959 1.22580 0.95628 0.98725 0.85172 1.22838 1.04521 0.92215 0.96316 1.22552 1.01621 0.98229 0.92155 1.21575 0.99768 0.76849 0.96137 0.91836 1.22521 1.00559 0.88230 0.96808 1.63643 1.16634 1.04147 1.38889 1.22765 0.88341 0.96965 0.99393 1.23138 1.00383 0.97648 0.96780 1.19704 0.88678 0.84976 0.86610 1.86078 1.61185 1.30189 1.61964 1.21820 1.29025 1.13734 0.95877 0.92965 1.25698 0.93607 0.96281 1.01412 1.69649 1.29531 1.21541 1.34401 0.85575 0.78259 0.77781 0.79790 1.19653 1.20164 1.20119 1.22837 0.99200 0.93488 0.90562 0.91470 0.89129 0.92856 0.91128 0.88002 0.90714 0.92855 0.88860 0.92311 0.89170 0.90241 0.89979 0.86752 0.89302 0.89770 0.90560 0.96839 0.90367 0.93374 0.92482 0.94673 0.77334 0.91905 0.94484 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.43 71.98 0.61 -3.12 16 2 C 0.12 2.61 1.13 -10.80 -0.01 2.60 16 3 C -0.13 -1.68 8.85 71.98 0.64 -1.04 16 4 C -0.18 -4.15 8.21 71.98 0.59 -3.55 16 5 O -0.36 -9.13 9.46 -55.42 -0.52 -9.66 16 6 C 0.66 20.01 7.66 129.79 0.99 21.00 16 7 O -0.59 -22.14 11.18 19.81 0.22 -21.92 16 8 N -0.60 -15.76 3.06 -918.23 -2.81 -18.57 16 9 C 0.10 1.72 6.90 86.85 0.60 2.32 16 10 C -0.12 -1.69 7.08 31.99 0.23 -1.47 16 11 C -0.11 -2.27 6.15 31.78 0.20 -2.07 16 12 C 0.16 4.51 2.58 45.34 0.12 4.63 16 13 H 0.06 2.03 6.27 -2.39 -0.01 2.01 16 14 C 0.05 1.68 4.13 86.30 0.36 2.03 16 15 N -0.51 -20.10 4.92 -885.52 -4.36 -24.46 16 16 C 0.05 2.16 6.14 86.65 0.53 2.69 16 17 C -0.14 -6.91 5.65 31.88 0.18 -6.73 16 18 C 0.24 12.59 0.89 -10.05 -0.01 12.58 16 19 O -0.59 -31.82 13.18 -148.98 -1.96 -33.78 16 20 C -0.57 -31.90 8.26 25.60 0.21 -31.68 16 21 H 0.05 2.94 7.77 -2.91 -0.02 2.91 16 22 C 0.03 1.67 5.30 84.66 0.45 2.12 16 23 N -0.91 -50.08 10.80 21.45 0.23 -49.85 16 24 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 C 0.07 3.09 5.89 86.78 0.51 3.60 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.52 5.97 -2.39 -0.01 1.51 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.64 5.99 -2.39 -0.01 1.62 16 36 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.33 8.10 -2.39 -0.02 1.31 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.08 1.85 7.85 -2.39 -0.02 1.83 16 44 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.01 0.55 6.89 -2.39 -0.02 0.54 16 46 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 47 H 0.05 1.89 6.05 -2.39 -0.01 1.88 16 48 H 0.06 2.94 7.85 -2.39 -0.02 2.92 16 49 H 0.03 1.82 8.04 -2.39 -0.02 1.80 16 50 H 0.38 20.92 6.94 -74.06 -0.51 20.41 16 51 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 52 H 0.04 1.74 7.59 -2.39 -0.02 1.72 16 53 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -66.87 404.33 -0.62 -67.49 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: 0.37 Total: 41.35 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.19 Total: 3.89 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -6.94 Total: -92.89 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: -2.27 Total: -65.36 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -66.87 -0.62 -67.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877605922.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.714 kcal (2) G-P(sol) polarization free energy of solvation -66.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds