Wall clock time and date at job start Sat Apr 11 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 H 1.08996 * 109.70345 * 299.27613 * 3 2 1 5 5 C 1.53190 * 109.58500 * 59.63058 * 3 2 1 6 6 C 1.53040 * 109.31200 * 174.42425 * 5 3 2 7 7 C 1.53036 * 109.52674 * 298.63674 * 6 5 3 8 8 C 1.53177 * 109.32339 * 61.37328 * 7 6 5 9 9 N 1.46919 * 108.76552 * 305.35628 * 8 7 6 10 10 C 1.34780 * 120.62845 * 233.58606 * 9 8 7 11 11 O 1.21284 * 120.00176 * 184.35636 * 10 9 8 12 12 C 1.50705 * 119.99902 * 4.35672 * 10 9 8 13 13 H 1.08995 * 109.46840 * 316.70353 * 12 10 9 14 14 C 1.52996 * 109.47128 * 76.70782 * 12 10 9 15 15 N 1.46502 * 109.46872 * 196.70949 * 12 10 9 16 16 C 1.36942 * 119.99724 * 299.99784 * 15 12 10 17 17 H 1.07997 * 119.99924 * 326.01649 * 16 15 12 18 18 C 1.38812 * 119.99869 * 146.02405 * 16 15 12 19 19 N 1.31615 * 119.99991 * 155.47784 * 18 16 15 20 20 Si 1.86796 * 120.00032 * 335.47252 * 18 16 15 21 21 H 1.48505 * 109.46771 * 93.19441 * 20 18 16 22 22 H 1.48494 * 109.47541 * 213.19597 * 20 18 16 23 23 H 1.48504 * 109.47270 * 333.19863 * 20 18 16 24 24 C 1.46500 * 120.00365 * 119.99920 * 15 12 10 25 25 C 1.52999 * 109.47125 * 84.41039 * 24 15 12 26 26 C 1.50699 * 109.47534 * 180.02562 * 25 24 15 27 27 O 1.20828 * 119.99460 * 359.97438 * 26 25 24 28 28 O 1.34221 * 120.00532 * 179.97438 * 26 25 24 29 29 C 1.45195 * 117.00411 * 179.97438 * 28 26 25 30 30 H 1.08999 * 109.47137 * 59.75066 * 1 2 3 31 31 H 1.09002 * 109.47001 * 179.74906 * 1 2 3 32 32 H 1.09003 * 109.47058 * 299.74557 * 1 2 3 33 33 H 1.09004 * 109.46850 * 240.00208 * 2 1 3 34 34 H 1.08992 * 109.47256 * 120.00455 * 2 1 3 35 35 H 1.08999 * 109.49822 * 54.46756 * 5 3 2 36 36 H 1.09008 * 109.49857 * 294.37480 * 5 3 2 37 37 H 1.08998 * 109.45976 * 58.65439 * 6 5 3 38 38 H 1.09003 * 109.45946 * 178.62981 * 6 5 3 39 39 H 1.08994 * 109.50106 * 181.31113 * 7 6 5 40 40 H 1.09000 * 109.50334 * 301.41220 * 7 6 5 41 41 H 1.08998 * 109.58736 * 185.57075 * 8 7 6 42 42 H 1.08997 * 109.70322 * 65.21517 * 8 7 6 43 43 H 1.09001 * 109.47089 * 54.11384 * 14 12 10 44 44 H 1.08998 * 109.46915 * 174.11536 * 14 12 10 45 45 H 1.08997 * 109.46671 * 294.11407 * 14 12 10 46 46 H 0.96996 * 120.00435 * 179.97438 * 19 18 16 47 47 H 1.08998 * 109.47090 * 204.41155 * 24 15 12 48 48 H 1.08997 * 109.46722 * 324.41224 * 24 15 12 49 49 H 1.09002 * 109.46875 * 300.00379 * 25 24 15 50 50 H 1.09006 * 109.47088 * 59.99883 * 25 24 15 51 51 H 1.09001 * 109.47246 * 300.00066 * 29 28 26 52 52 H 1.09007 * 109.47172 * 59.99858 * 29 28 26 53 53 H 1.08998 * 109.47575 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6894 1.9562 -0.8951 5 6 1.5232 2.1699 1.2452 6 6 2.1478 3.5654 1.3119 7 6 3.6690 3.4404 1.4218 8 6 4.2102 2.7276 0.1787 9 7 3.5090 1.4456 0.0261 10 6 4.2002 0.2942 -0.0882 11 8 3.6137 -0.7475 -0.2927 12 6 5.7019 0.3012 0.0381 13 1 6.1092 1.1464 -0.5166 14 6 6.0891 0.4249 1.5131 15 7 6.2435 -0.9466 -0.5060 16 6 5.8715 -2.1481 0.0356 17 1 5.6722 -2.2246 1.0943 18 6 5.7508 -3.2676 -0.7761 19 7 5.8748 -4.4717 -0.2592 20 14 5.4121 -3.0654 -2.6019 21 1 6.6974 -3.0554 -3.3456 22 1 4.5735 -4.1946 -3.0780 23 1 4.6962 -1.7851 -2.8337 24 6 7.1830 -0.9091 -1.6294 25 6 8.6007 -0.6806 -1.1013 26 6 9.5671 -0.6414 -2.2569 27 8 9.1634 -0.7822 -3.3870 28 8 10.8763 -0.4500 -2.0308 29 6 11.7488 -0.4242 -3.1911 30 1 -0.3633 0.5177 -0.8877 31 1 -0.3633 -1.0277 -0.0045 32 1 -0.3633 0.5099 0.8923 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.7977 1.6054 2.1364 36 1 0.4382 2.2590 1.1904 37 1 1.8933 4.1206 0.4090 38 1 1.7630 4.0942 2.1839 39 1 4.1116 4.4339 1.4927 40 1 3.9234 2.8640 2.3113 41 1 5.2788 2.5479 0.2966 42 1 4.0387 3.3452 -0.7029 43 1 5.5962 -0.3611 2.0853 44 1 7.1697 0.3251 1.6147 45 1 5.7771 1.3988 1.8901 46 1 5.7901 -5.2540 -0.8263 47 1 7.1440 -1.8562 -2.1675 48 1 6.9111 -0.0967 -2.3034 49 1 8.6397 0.2665 -0.5631 50 1 8.8726 -1.4930 -0.4272 51 1 11.6787 -1.3749 -3.7196 52 1 11.4451 0.3844 -3.8561 53 1 12.7774 -0.2630 -2.8688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475210.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:13 Heat of formation + Delta-G solvation = -104.260568 kcal Electronic energy + Delta-G solvation = -32528.181182 eV Core-core repulsion = 28400.697846 eV Total energy + Delta-G solvation = -4127.483336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.58416 -41.39205 -38.83438 -37.75899 -37.24833 -35.34727 -33.97127 -33.63478 -32.97596 -30.76045 -30.17080 -28.55986 -26.78745 -26.19905 -25.04428 -24.84189 -23.35006 -22.00720 -21.76031 -21.46692 -19.76025 -18.94399 -18.19015 -17.90875 -17.62301 -17.39886 -17.17865 -16.57288 -16.24571 -15.87907 -15.48604 -15.33666 -15.23862 -14.92202 -14.63844 -14.50082 -14.46116 -14.26149 -14.08068 -13.89040 -13.76509 -13.53333 -13.43262 -12.99909 -12.95891 -12.91012 -12.79285 -12.73030 -12.51870 -12.46060 -12.03710 -11.93386 -11.87127 -11.80169 -11.71630 -11.67675 -11.57615 -11.45679 -11.41911 -11.27724 -10.57008 -9.71896 -9.31374 -8.88385 -8.14836 -5.43468 1.18041 1.25466 1.33955 1.46626 1.75046 2.00255 2.20803 2.43640 3.11115 3.29518 3.68801 3.90049 3.91945 3.97723 4.07051 4.11254 4.18167 4.24917 4.26403 4.33277 4.33479 4.34461 4.36058 4.46389 4.54566 4.56220 4.57541 4.70755 4.72612 4.75358 4.84872 4.88004 4.92105 4.96644 5.05192 5.07308 5.09031 5.18831 5.20628 5.23397 5.28239 5.38168 5.38756 5.48152 5.52691 5.57680 5.90288 5.97480 6.20361 6.66170 6.73833 6.98597 7.59031 7.71529 7.98330 9.05317 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.004099 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.088915 B = 6829.027820 C = 8290.530039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.148 3.852 4 H 0.070 0.930 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.130 4.130 8 C 0.097 3.903 9 N -0.620 5.620 10 C 0.481 3.519 11 O -0.541 6.541 12 C 0.145 3.855 13 H 0.110 0.890 14 C -0.136 4.136 15 N -0.591 5.591 16 C -0.191 4.191 17 H 0.056 0.944 18 C -0.011 4.011 19 N -0.948 5.948 20 Si 0.921 3.079 21 H -0.287 1.287 22 H -0.323 1.323 23 H -0.278 1.278 24 C 0.145 3.855 25 C -0.118 4.118 26 C 0.468 3.532 27 O -0.548 6.548 28 O -0.361 6.361 29 C 0.026 3.974 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.027 0.973 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.255 0.745 47 H 0.035 0.965 48 H 0.057 0.943 49 H 0.139 0.861 50 H 0.106 0.894 51 H 0.052 0.948 52 H 0.065 0.935 53 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 22.812 2.755 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.045 3.955 4 H 0.088 0.912 5 C -0.162 4.162 6 C -0.152 4.152 7 C -0.168 4.168 8 C -0.025 4.025 9 N -0.356 5.356 10 C 0.268 3.732 11 O -0.416 6.416 12 C 0.036 3.964 13 H 0.128 0.872 14 C -0.195 4.195 15 N -0.312 5.312 16 C -0.321 4.321 17 H 0.074 0.926 18 C -0.206 4.206 19 N -0.594 5.594 20 Si 0.755 3.245 21 H -0.215 1.215 22 H -0.253 1.253 23 H -0.204 1.204 24 C 0.019 3.981 25 C -0.158 4.158 26 C 0.312 3.688 27 O -0.438 6.438 28 O -0.277 6.277 29 C -0.067 4.067 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.075 0.925 49 H 0.156 0.844 50 H 0.124 0.876 51 H 0.071 0.929 52 H 0.083 0.917 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.015 22.058 2.261 22.197 hybrid contribution -0.510 -1.225 -1.471 1.981 sum 0.505 20.833 0.790 20.855 Atomic orbital electron populations 1.21911 0.94987 1.01386 1.02459 1.21822 0.95260 0.95677 1.01905 1.21273 0.79696 0.95852 0.98727 0.91178 1.21978 1.01110 0.96807 0.96320 1.21510 0.95269 0.95411 1.03031 1.21915 0.96211 1.01583 0.97090 1.22047 0.97784 0.83344 0.99281 1.48524 1.06247 1.07248 1.73595 1.22312 0.91946 0.83180 0.75726 1.90777 1.69953 1.33553 1.47367 1.20849 0.88526 0.89563 0.97478 0.87203 1.21982 1.02568 1.01411 0.93555 1.44215 1.46752 1.02219 1.38032 1.18315 1.37811 0.84402 0.91584 0.92587 1.25636 1.00395 0.95332 0.99197 1.69933 1.54873 0.98030 1.36599 0.86291 0.76726 0.75880 0.85632 1.21534 1.25270 1.20393 1.20970 0.87983 1.00010 0.89090 1.22023 0.91697 1.07215 0.94849 1.24259 0.82710 0.70922 0.90871 1.90644 1.79401 1.47147 1.26624 1.86522 1.18652 1.82462 1.40056 1.23547 0.94029 1.02262 0.86859 0.91938 0.93862 0.91030 0.93237 0.94582 0.93197 0.89614 0.90966 0.90307 0.88116 0.92192 0.88475 0.90440 0.95414 0.90408 0.89534 0.93536 0.94710 0.92503 0.84359 0.87587 0.92916 0.91655 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.55 71.98 0.69 -3.28 16 2 C -0.11 -3.78 3.89 30.60 0.12 -3.67 16 3 C 0.15 4.00 3.02 44.98 0.14 4.13 16 4 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 5 C -0.12 -2.47 4.83 30.67 0.15 -2.33 16 6 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 7 C -0.13 -1.79 6.08 30.67 0.19 -1.60 16 8 C 0.10 1.77 5.79 86.36 0.50 2.27 16 9 N -0.62 -17.80 2.97 -795.09 -2.36 -20.16 16 10 C 0.48 18.72 6.77 87.66 0.59 19.32 16 11 O -0.54 -27.26 10.49 -3.04 -0.03 -27.29 16 12 C 0.15 5.05 2.30 44.24 0.10 5.15 16 13 H 0.11 2.97 6.52 -2.39 -0.02 2.96 16 14 C -0.14 -4.00 8.80 71.98 0.63 -3.37 16 15 N -0.59 -26.53 1.99 -682.21 -1.36 -27.89 16 16 C -0.19 -10.74 7.64 84.03 0.64 -10.10 16 17 H 0.06 3.47 7.11 -2.91 -0.02 3.45 16 18 C -0.01 -0.66 5.26 84.86 0.45 -0.22 16 19 N -0.95 -62.04 13.97 21.65 0.30 -61.74 16 20 Si 0.92 52.81 25.12 68.60 1.72 54.53 16 21 H -0.29 -16.13 6.53 99.48 0.65 -15.48 16 22 H -0.32 -19.12 7.11 99.48 0.71 -18.41 16 23 H -0.28 -16.13 7.11 99.48 0.71 -15.43 16 24 C 0.14 6.15 3.57 86.38 0.31 6.46 16 25 C -0.12 -3.91 6.13 29.85 0.18 -3.72 16 26 C 0.47 15.77 7.96 71.24 0.57 16.33 16 27 O -0.55 -22.18 15.73 21.96 0.35 -21.84 16 28 O -0.36 -9.97 10.56 -51.33 -0.54 -10.51 16 29 C 0.03 0.54 10.56 113.37 1.20 1.73 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.56 6.58 -2.39 -0.02 1.54 16 33 H 0.05 2.17 6.21 -2.38 -0.01 2.16 16 34 H 0.04 1.47 7.26 -2.39 -0.02 1.45 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.45 6.76 -2.38 -0.02 1.43 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.56 4.75 -2.39 -0.01 1.55 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.03 1.01 7.22 -2.39 -0.02 0.99 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.09 1.84 6.82 -2.39 -0.02 1.82 16 46 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 47 H 0.03 1.78 3.14 -2.39 -0.01 1.77 16 48 H 0.06 2.25 8.00 -2.39 -0.02 2.23 16 49 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 50 H 0.11 3.76 8.14 -2.38 -0.02 3.74 16 51 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 52 H 0.06 1.28 8.13 -2.38 -0.02 1.26 16 53 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -83.75 400.40 5.53 -78.22 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.83 Total: 10.99 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 6.63 Total: 25.70 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -3.42 Total: -109.79 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -0.23 Total: -59.64 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 1.72 Total: 54.53 kcal Total: -83.75 5.53 -78.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475210.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.044 kcal (2) G-P(sol) polarization free energy of solvation -83.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds