Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47156 * 240.00152 * 2 1 3 5 5 O 1.45201 * 109.47293 * 119.99823 * 2 1 3 6 6 C 1.34630 * 116.99786 * 59.99832 * 5 2 1 7 7 O 1.21510 * 120.00088 * 0.02562 * 6 5 2 8 8 N 1.34782 * 119.99997 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00016 * 180.02562 * 8 6 5 10 10 H 1.09004 * 108.69547 * 36.64769 * 9 8 6 11 11 C 1.54006 * 108.87521 * 278.37336 * 9 8 6 12 12 C 1.50473 * 112.55052 * 197.52070 * 11 9 8 13 13 C 1.54234 * 108.53029 * 94.06869 * 12 11 9 14 14 C 1.45553 * 112.40098 * 280.02177 * 13 12 11 15 15 C 1.54234 * 112.40960 * 61.93996 * 14 13 12 16 16 C 1.50481 * 108.51339 * 279.99967 * 15 14 13 17 17 H 1.09000 * 108.87788 * 333.48021 * 16 15 14 18 18 C 1.50695 * 108.87581 * 214.93361 * 16 15 14 19 19 O 1.21285 * 120.00087 * 238.55452 * 18 16 15 20 20 N 1.34776 * 120.00245 * 58.56577 * 18 16 15 21 21 C 1.46496 * 120.00006 * 179.97438 * 20 18 16 22 22 C 1.50706 * 109.47106 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99515 * 0.02562 * 22 21 20 24 24 C 1.37870 * 120.00176 * 180.02562 * 22 21 20 25 25 N 1.31520 * 119.99883 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00043 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47288 * 59.99994 * 26 24 22 28 28 H 1.48503 * 109.47086 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46819 * 299.99648 * 26 24 22 30 30 H 1.08999 * 109.47114 * 300.00108 * 1 2 3 31 31 H 1.09005 * 109.47403 * 60.00184 * 1 2 3 32 32 H 1.09004 * 109.47032 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47087 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46880 * 300.00136 * 3 2 1 35 35 H 1.08999 * 109.47391 * 59.99443 * 3 2 1 36 36 H 1.09002 * 109.47295 * 299.99632 * 4 2 1 37 37 H 1.08996 * 109.47409 * 59.99716 * 4 2 1 38 38 H 1.09006 * 109.46992 * 179.97438 * 4 2 1 39 39 H 0.96996 * 119.99608 * 0.02562 * 8 6 5 40 40 H 1.08994 * 108.90984 * 76.68345 * 11 9 8 41 41 H 1.09004 * 108.70400 * 318.21574 * 11 9 8 42 42 H 1.09004 * 109.62601 * 334.35382 * 12 11 9 43 43 H 1.09002 * 109.62619 * 213.78106 * 12 11 9 44 44 H 1.08996 * 108.89909 * 159.27054 * 13 12 11 45 45 H 1.09000 * 108.82446 * 40.71866 * 13 12 11 46 46 H 1.08998 * 108.88889 * 301.18535 * 14 13 12 47 47 H 1.08998 * 108.89014 * 182.69301 * 14 13 12 48 48 H 1.08999 * 109.63031 * 160.29689 * 15 14 13 49 49 H 1.08997 * 109.63315 * 39.70375 * 15 14 13 50 50 H 0.96998 * 119.99803 * 359.97438 * 20 18 16 51 51 H 1.09001 * 109.47001 * 59.99676 * 21 20 18 52 52 H 1.09000 * 109.47574 * 299.99892 * 21 20 18 53 53 H 0.97004 * 119.99507 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5036 8 7 2.0681 -2.6656 2.4167 9 6 1.6749 -4.0670 2.5827 10 1 1.6608 -4.5443 1.6028 11 6 0.2556 -4.1191 3.1782 12 6 -0.0727 -5.4628 3.7706 13 6 0.2505 -5.4260 5.2782 14 6 1.6702 -5.6037 5.5456 15 6 2.5297 -4.4814 4.9288 16 6 2.7205 -4.7752 3.4653 17 1 2.6436 -5.8512 3.3086 18 6 4.0963 -4.3200 3.0519 19 8 4.2233 -3.4985 2.1687 20 7 5.1856 -4.8258 3.6635 21 6 6.5230 -4.3836 3.2612 22 6 7.5587 -5.0948 4.0935 23 1 7.2514 -5.8055 4.8464 24 6 8.8985 -4.8383 3.8937 25 7 9.2728 -3.9725 2.9771 26 14 10.1823 -5.7204 4.9248 27 1 10.0628 -7.1859 4.7167 28 1 11.5381 -5.2721 4.5171 29 1 9.9668 -5.4049 6.3598 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6767 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2494 39 1 2.6277 -2.2367 3.0828 40 1 -0.4656 -3.8943 2.3925 41 1 0.1754 -3.3610 3.9573 42 1 0.5274 -6.2330 3.2861 43 1 -1.1321 -5.6766 3.6284 44 1 -0.3048 -6.2197 5.7778 45 1 -0.0671 -4.4649 5.6827 46 1 1.9899 -6.5605 5.1329 47 1 1.8273 -5.6163 6.6241 48 1 3.4997 -4.4483 5.4250 49 1 2.0218 -3.5243 5.0469 50 1 5.0840 -5.4826 4.3700 51 1 6.6111 -3.3078 3.4135 52 1 6.6809 -4.6155 2.2080 53 1 10.2155 -3.7923 2.8363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879800839.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -155.375087 kcal Electronic energy + Delta-G solvation = -31947.597127 eV Core-core repulsion = 27817.897299 eV Total energy + Delta-G solvation = -4129.699828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06711 -41.15207 -39.15183 -38.01574 -36.29077 -35.50091 -34.82808 -34.41381 -33.15933 -31.78203 -29.26414 -28.36406 -28.29640 -26.31818 -25.85409 -24.47790 -23.40130 -21.77645 -21.47921 -20.92409 -20.29216 -19.27395 -18.94491 -17.79603 -17.50403 -17.13909 -16.97751 -16.49797 -16.30983 -16.10846 -15.66724 -15.48726 -15.38714 -15.12273 -14.68579 -14.47871 -14.35571 -14.12968 -13.97862 -13.87825 -13.69256 -13.32933 -13.17679 -12.97831 -12.93293 -12.88704 -12.84779 -12.81966 -12.66642 -12.47681 -12.26763 -12.24588 -11.78150 -11.72353 -11.58742 -11.49402 -11.37064 -11.29852 -11.20762 -11.02124 -10.78681 -10.56841 -9.91256 -9.71342 -8.28902 -6.45547 1.29967 1.42836 1.46635 1.54750 1.77264 1.92846 2.30667 2.54053 3.06122 3.21565 3.42299 3.69646 3.76835 3.81372 3.82593 3.95841 4.02792 4.16065 4.21735 4.34334 4.42267 4.46474 4.54371 4.60097 4.61300 4.73089 4.75060 4.82566 4.85847 4.86906 4.97936 5.03207 5.06555 5.10386 5.16167 5.22278 5.25168 5.26842 5.29356 5.35918 5.39315 5.40944 5.47999 5.49175 5.55264 5.62387 5.66503 5.71345 5.85628 6.49162 6.65812 6.92435 7.24055 7.45161 7.51557 8.82836 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003503 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.102331 B = 7991.966257 C =10568.152458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.379 6.379 6 C 0.651 3.349 7 O -0.598 6.598 8 N -0.679 5.679 9 C 0.188 3.812 10 H 0.060 0.940 11 C -0.115 4.115 12 C -0.114 4.114 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.096 4.096 17 H 0.131 0.869 18 C 0.492 3.508 19 O -0.586 6.586 20 N -0.704 5.704 21 C 0.270 3.730 22 C -0.555 4.555 23 H 0.084 0.916 24 C 0.004 3.996 25 N -0.932 5.932 26 Si 0.983 3.017 27 H -0.262 1.262 28 H -0.287 1.287 29 H -0.260 1.260 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.403 0.597 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.407 0.593 51 H -0.013 1.013 52 H -0.019 1.019 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.705 1.518 3.668 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.085 3.915 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.294 6.294 6 C 0.404 3.596 7 O -0.491 6.491 8 N -0.335 5.335 9 C 0.084 3.916 10 H 0.079 0.921 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.118 4.118 17 H 0.148 0.852 18 C 0.279 3.721 19 O -0.467 6.467 20 N -0.354 5.354 21 C 0.147 3.853 22 C -0.593 4.593 23 H 0.102 0.898 24 C -0.196 4.196 25 N -0.570 5.570 26 Si 0.806 3.194 27 H -0.187 1.187 28 H -0.213 1.213 29 H -0.185 1.185 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.238 0.762 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.243 0.757 51 H 0.005 0.995 52 H -0.001 1.001 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.776 1.984 2.513 22.010 hybrid contribution 1.566 -0.175 0.240 1.594 sum -20.209 1.809 2.753 20.476 Atomic orbital electron populations 1.22414 0.92955 1.03826 1.03697 1.22411 0.95247 0.92503 0.81354 1.21884 1.01823 0.91010 1.04551 1.22456 1.00738 1.02365 0.98024 1.86318 1.71953 1.23846 1.47311 1.18131 0.78580 0.80634 0.82207 1.90808 1.43398 1.70862 1.44003 1.44689 1.53618 1.12244 1.22975 1.21224 0.93497 0.78487 0.98387 0.92132 1.21676 0.93248 0.99934 1.00503 1.21337 1.02198 0.95560 0.96070 1.20502 0.96482 1.02885 0.95422 1.20477 0.95116 0.97683 1.01637 1.21476 1.01650 1.01105 0.90843 1.21532 0.88795 1.03384 0.98060 0.85173 1.21408 0.87699 0.81381 0.81634 1.90711 1.87783 1.35343 1.32825 1.46177 1.06070 1.44092 1.39022 1.18468 0.79327 0.93619 0.93861 1.21592 0.91396 1.25613 1.20666 0.89754 1.26052 1.01263 0.95733 0.96506 1.70143 1.17512 1.35127 1.34233 0.85241 0.76565 0.78813 0.78815 1.18704 1.21313 1.18475 0.91666 0.88836 0.91767 0.92504 0.87445 0.90852 0.92111 0.88528 0.93750 0.76231 0.92564 0.90914 0.91190 0.90312 0.90456 0.91938 0.90916 0.90432 0.91098 0.90658 0.75682 0.99479 1.00061 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 8.37 71.98 0.60 -3.32 16 2 C 0.12 3.25 1.13 -10.79 -0.01 3.24 16 3 C -0.14 -2.75 8.85 71.98 0.64 -2.11 16 4 C -0.18 -5.06 8.37 71.98 0.60 -4.46 16 5 O -0.38 -12.97 9.94 -55.39 -0.55 -13.52 16 6 C 0.65 23.31 7.96 129.79 1.03 24.35 16 7 O -0.60 -22.60 11.55 19.81 0.23 -22.38 16 8 N -0.68 -22.06 3.03 -566.77 -1.71 -23.78 16 9 C 0.19 5.14 1.89 45.70 0.09 5.23 16 10 H 0.06 1.98 7.59 -2.38 -0.02 1.96 16 11 C -0.11 -2.35 4.82 30.12 0.15 -2.20 16 12 C -0.11 -1.66 5.61 30.19 0.17 -1.49 16 13 C -0.12 -1.39 5.26 28.74 0.15 -1.24 16 14 C -0.11 -1.50 5.26 28.74 0.15 -1.35 16 15 C -0.11 -2.20 5.05 30.20 0.15 -2.04 16 16 C -0.10 -2.42 1.81 -11.99 -0.02 -2.44 16 17 H 0.13 2.71 6.63 -2.39 -0.02 2.69 16 18 C 0.49 18.63 6.62 87.66 0.58 19.21 16 19 O -0.59 -27.87 13.82 -3.05 -0.04 -27.91 16 20 N -0.70 -28.42 5.13 -466.79 -2.39 -30.81 16 21 C 0.27 14.62 5.43 85.64 0.46 15.08 16 22 C -0.55 -29.73 9.28 25.60 0.24 -29.49 16 23 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 24 C 0.00 0.22 5.46 84.65 0.46 0.68 16 25 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 26 Si 0.98 41.93 29.54 68.60 2.03 43.96 16 27 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 28 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 29 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.06 1.80 5.88 -2.38 -0.01 1.79 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 2.07 5.88 -2.39 -0.01 2.05 16 37 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.40 13.32 7.70 -92.71 -0.71 12.60 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.40 6.60 -2.39 -0.02 1.39 16 42 H 0.07 1.02 6.98 -2.38 -0.02 1.01 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.76 7.47 -2.39 -0.02 0.74 16 46 H 0.07 0.90 7.47 -2.39 -0.02 0.88 16 47 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 1.53 6.86 -2.39 -0.02 1.51 16 49 H 0.07 1.44 6.97 -2.39 -0.02 1.43 16 50 H 0.41 13.49 7.72 -92.71 -0.72 12.78 16 51 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 52 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 53 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -75.19 404.26 2.77 -72.42 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -0.52 Total: 40.31 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.44 Total: 17.66 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.82 Total: -110.55 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -0.36 Total: -63.81 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -75.19 2.77 -72.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879800839.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.955 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds