Wall clock time and date at job start Sat Apr 11 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 C 1.52995 * 109.47168 * 239.99695 * 2 1 3 5 5 O 1.45206 * 109.46694 * 119.99915 * 2 1 3 6 6 C 1.34636 * 117.00136 * 59.99990 * 5 2 1 7 7 O 1.21509 * 119.99990 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99877 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 H 1.09006 * 110.88672 * 305.69511 * 11 10 9 13 13 C 1.55153 * 111.00820 * 69.57761 * 11 10 9 14 14 C 1.54328 * 102.94450 * 153.57682 * 13 11 10 15 15 N 1.47029 * 107.26807 * 337.81082 * 14 13 11 16 16 C 1.34778 * 125.64462 * 178.90426 * 15 14 13 17 17 O 1.21282 * 119.99734 * 180.02562 * 16 15 14 18 18 C 1.50694 * 120.00103 * 0.02562 * 16 15 14 19 19 C 1.53003 * 109.46943 * 180.02562 * 18 16 15 20 20 C 1.50708 * 109.46993 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00008 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99866 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99997 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 120.00046 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47035 * 89.99956 * 24 22 20 26 26 H 1.48503 * 109.47144 * 210.00002 * 24 22 20 27 27 H 1.48499 * 109.46773 * 330.00034 * 24 22 20 28 28 C 1.47467 * 108.72307 * 358.96952 * 15 14 13 29 29 H 1.08994 * 109.47245 * 300.00365 * 1 2 3 30 30 H 1.09006 * 109.47200 * 60.00393 * 1 2 3 31 31 H 1.09003 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47015 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46468 * 299.99903 * 3 2 1 34 34 H 1.08995 * 109.46581 * 59.99548 * 3 2 1 35 35 H 1.09003 * 109.47357 * 300.00161 * 4 2 1 36 36 H 1.08993 * 109.47323 * 60.00149 * 4 2 1 37 37 H 1.08999 * 109.46974 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 40 40 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 41 41 H 1.09001 * 109.47194 * 299.99493 * 10 9 8 42 42 H 1.08992 * 109.47399 * 59.99666 * 10 9 8 43 43 H 1.09000 * 110.72080 * 271.94204 * 13 11 10 44 44 H 1.08995 * 110.71825 * 35.21278 * 13 11 10 45 45 H 1.09005 * 109.88301 * 97.22256 * 14 13 11 46 46 H 1.08993 * 109.88130 * 218.23989 * 14 13 11 47 47 H 1.09003 * 109.47520 * 300.00159 * 18 16 15 48 48 H 1.09002 * 109.47065 * 60.00192 * 18 16 15 49 49 H 1.09000 * 109.46716 * 299.99706 * 19 18 16 50 50 H 1.09002 * 109.47371 * 60.00027 * 19 18 16 51 51 H 0.97001 * 119.99942 * 179.97438 * 23 22 20 52 52 H 1.08992 * 110.35395 * 265.25748 * 28 15 14 53 53 H 1.08999 * 110.40260 * 142.91697 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0670 -2.6654 2.4174 9 6 1.6738 -4.0668 2.5833 10 6 2.2727 -4.6143 3.8804 11 6 1.8626 -6.0781 4.0535 12 1 0.7793 -6.1872 3.9995 13 6 2.5652 -6.9803 3.0049 14 6 2.6115 -8.3541 3.7064 15 7 2.5006 -8.1100 5.1520 16 6 2.4805 -9.0583 6.1095 17 8 2.3848 -8.7404 7.2760 18 6 2.5771 -10.5137 5.7307 19 6 2.5310 -11.3739 6.9951 20 6 2.6283 -12.8293 6.6164 21 1 2.7139 -13.1124 5.5777 22 6 2.6079 -13.7994 7.5959 23 7 2.6923 -15.0695 7.2653 24 14 2.4605 -13.3097 9.3926 25 1 1.0263 -13.2476 9.7726 26 1 3.1535 -14.3147 10.2381 27 1 3.0844 -11.9774 9.5952 28 6 2.4133 -6.6558 5.3812 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2076 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 2.6266 -2.2364 3.0835 39 1 2.0410 -4.6497 1.7387 40 1 0.5869 -4.1364 2.6277 41 1 3.3596 -4.5447 3.8366 42 1 1.9051 -4.0313 4.7248 43 1 1.9783 -7.0350 2.0880 44 1 3.5724 -6.6187 2.7982 45 1 1.7780 -8.9706 3.3696 46 1 3.5548 -8.8525 3.4836 47 1 1.7415 -10.7766 5.0821 48 1 3.5152 -10.6906 5.2044 49 1 3.3665 -11.1111 7.6440 50 1 1.5929 -11.1969 7.5211 51 1 2.6783 -15.7519 7.9545 52 1 3.4006 -6.2454 5.5927 53 1 1.7284 -6.4408 6.2014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884796745.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:31 Heat of formation + Delta-G solvation = -163.005243 kcal Electronic energy + Delta-G solvation = -29089.865840 eV Core-core repulsion = 24959.835144 eV Total energy + Delta-G solvation = -4130.030696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76869 -41.10078 -39.11310 -38.32936 -36.32496 -35.57488 -35.06319 -33.85289 -33.15741 -30.72407 -29.56229 -28.34183 -28.27618 -27.76019 -24.99496 -23.95690 -23.00533 -22.54673 -21.49276 -20.81898 -20.09556 -19.19425 -19.06635 -17.82071 -17.60373 -17.38165 -17.23221 -16.56623 -16.28010 -16.16078 -15.83725 -15.62815 -15.46857 -15.14612 -14.76410 -14.55657 -14.43303 -14.34318 -13.91189 -13.80819 -13.38438 -13.32562 -13.29356 -13.20151 -13.01741 -12.90810 -12.87850 -12.83990 -12.56987 -12.36099 -12.28814 -12.19894 -11.99203 -11.93683 -11.78591 -11.60111 -11.51622 -11.40684 -11.36428 -11.09921 -10.79343 -10.79073 -10.17365 -9.63817 -8.32468 -6.35556 1.20048 1.32330 1.34125 1.49435 1.63528 1.79139 2.04045 2.34221 3.03105 3.17979 3.39178 3.65218 3.77310 3.81423 3.82252 3.91298 3.97119 4.19267 4.26949 4.32813 4.36819 4.41411 4.46409 4.52777 4.57906 4.63629 4.69268 4.71173 4.78357 4.78824 4.85633 4.86556 4.90136 4.92458 4.96102 5.05956 5.08637 5.15530 5.22150 5.27907 5.29790 5.30097 5.38123 5.40828 5.41777 5.48097 5.59002 5.62258 6.22245 6.43509 6.48319 6.70279 7.19186 7.29931 7.37494 8.83158 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.041413 B = 0.001437 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.951581 B =19477.300605 C =19839.237520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.701 5.701 9 C 0.140 3.860 10 C -0.108 4.108 11 C -0.085 4.085 12 H 0.090 0.910 13 C -0.119 4.119 14 C 0.089 3.911 15 N -0.623 5.623 16 C 0.525 3.475 17 O -0.589 6.589 18 C -0.110 4.110 19 C 0.006 3.994 20 C -0.530 4.530 21 H 0.050 0.950 22 C 0.016 3.984 23 N -0.942 5.942 24 Si 0.937 3.063 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.263 1.263 28 C 0.104 3.896 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.417 0.583 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.009 0.991 50 H 0.008 0.992 51 H 0.268 0.732 52 H 0.075 0.925 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 37.036 -18.147 41.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.395 3.605 7 O -0.486 6.486 8 N -0.362 5.362 9 C 0.018 3.982 10 C -0.146 4.146 11 C -0.105 4.105 12 H 0.108 0.892 13 C -0.157 4.157 14 C -0.033 4.033 15 N -0.357 5.357 16 C 0.316 3.684 17 O -0.470 6.470 18 C -0.149 4.149 19 C -0.032 4.032 20 C -0.568 4.568 21 H 0.068 0.932 22 C -0.182 4.182 23 N -0.583 5.583 24 Si 0.762 3.238 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.187 1.187 28 C -0.018 4.018 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.254 0.746 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.028 0.972 50 H 0.026 0.974 51 H 0.077 0.923 52 H 0.093 0.907 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.857 36.765 -17.878 40.891 hybrid contribution 0.028 -0.489 1.212 1.307 sum -0.829 36.276 -16.667 39.930 Atomic orbital electron populations 1.22478 0.94119 1.03653 1.03513 1.22371 0.94447 0.92667 0.81559 1.21889 1.02464 0.90785 1.04254 1.22473 1.01657 1.02247 0.97347 1.86309 1.71588 1.23288 1.47321 1.18339 0.78814 0.80807 0.82533 1.90907 1.42310 1.71029 1.44363 1.44740 1.55291 1.12937 1.23186 1.21354 0.99973 0.78171 0.98680 1.21603 1.02517 0.93816 0.96627 1.22190 1.01037 0.94278 0.93017 0.89164 1.22797 1.02806 0.91862 0.98208 1.22342 1.02819 0.99899 0.78277 1.48619 1.72492 1.06810 1.07796 1.20898 0.74733 0.88490 0.84328 1.90630 1.52105 1.83746 1.20485 1.21448 1.04501 0.88734 1.00267 1.19226 0.96280 0.93349 0.94372 1.21402 1.50110 0.90725 0.94536 0.93170 1.25776 0.94228 0.94750 1.03442 1.70017 1.52257 1.00811 1.35175 0.85844 0.79126 0.78564 0.80279 1.19361 1.20135 1.18718 1.22376 1.01383 0.79426 0.98652 0.91994 0.89324 0.91930 0.91153 0.88184 0.91226 0.91880 0.89347 0.91901 0.74584 0.90869 0.91779 0.89080 0.89604 0.87955 0.88809 0.90731 0.90487 0.88380 0.88330 0.97226 0.97391 0.92333 0.90693 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 8.37 71.98 0.60 -1.72 16 2 C 0.13 1.58 1.13 -10.79 -0.01 1.56 16 3 C -0.14 -0.94 8.85 71.98 0.64 -0.30 16 4 C -0.18 -2.28 8.37 71.98 0.60 -1.68 16 5 O -0.37 -5.81 9.94 -55.45 -0.55 -6.36 16 6 C 0.64 11.20 8.06 129.79 1.05 12.24 16 7 O -0.59 -13.60 11.88 19.81 0.24 -13.37 16 8 N -0.70 -7.91 5.56 -590.85 -3.29 -11.20 16 9 C 0.14 1.39 5.55 86.38 0.48 1.86 16 10 C -0.11 -0.76 4.84 30.59 0.15 -0.61 16 11 C -0.09 -1.00 3.03 -9.40 -0.03 -1.03 16 12 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 13 C -0.12 -1.28 5.75 31.78 0.18 -1.10 16 14 C 0.09 1.61 6.49 86.73 0.56 2.17 16 15 N -0.62 -16.57 3.33 -811.67 -2.70 -19.27 16 16 C 0.52 19.67 7.85 87.65 0.69 20.36 16 17 O -0.59 -27.10 16.24 -3.04 -0.05 -27.15 16 18 C -0.11 -4.34 4.83 29.85 0.14 -4.20 16 19 C 0.01 0.29 3.33 29.85 0.10 0.39 16 20 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 21 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 22 C 0.02 0.95 5.47 84.65 0.46 1.42 16 23 N -0.94 -59.30 13.96 21.44 0.30 -59.00 16 24 Si 0.94 47.24 27.47 68.60 1.88 49.12 16 25 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.26 -13.23 6.54 99.48 0.65 -12.58 16 28 C 0.10 2.09 6.38 86.85 0.55 2.65 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 1.16 5.88 -2.39 -0.01 1.15 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 1.15 5.88 -2.39 -0.01 1.14 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.42 2.76 8.58 -92.71 -0.80 1.97 16 39 H 0.07 0.78 7.63 -2.39 -0.02 0.76 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.09 0.46 8.04 -2.39 -0.02 0.44 16 42 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 0.78 7.96 -2.39 -0.02 0.76 16 45 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 48 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 49 H 0.01 0.50 7.15 -2.39 -0.02 0.49 16 50 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 51 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 52 H 0.07 1.38 8.03 -2.39 -0.02 1.36 16 53 H 0.06 1.44 8.04 -2.39 -0.02 1.42 16 Total: -1.00 -80.86 420.24 2.27 -78.58 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.03 Total: 7.40 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 6.42 Total: 1.25 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -5.69 Total: -89.47 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -0.36 Total: -46.88 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.88 Total: 49.12 kcal Total: -80.86 2.27 -78.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884796745.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.423 kcal (2) G-P(sol) polarization free energy of solvation -80.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds