Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47100 * 2 1 4 4 C 1.52998 * 109.46500 * 240.00348 * 2 1 3 5 5 O 1.45195 * 109.47406 * 120.00744 * 2 1 3 6 6 C 1.34641 * 117.00338 * 59.99588 * 5 2 1 7 7 O 1.21510 * 119.99675 * 359.97438 * 6 5 2 8 8 N 1.34769 * 119.99750 * 180.02562 * 6 5 2 9 9 C 1.46505 * 119.99798 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 34.99973 * 9 8 6 11 11 C 1.52997 * 109.47212 * 274.99913 * 9 8 6 12 12 C 1.53004 * 109.47236 * 64.99775 * 11 9 8 13 13 C 1.52998 * 117.49925 * 243.75172 * 12 11 9 14 14 C 1.53002 * 117.49942 * 175.08948 * 12 11 9 15 15 C 1.50699 * 109.47262 * 154.99826 * 9 8 6 16 16 O 1.21285 * 120.00039 * 0.02562 * 15 9 8 17 17 N 1.34774 * 119.99942 * 180.02562 * 15 9 8 18 18 C 1.46500 * 119.99881 * 180.02562 * 17 15 9 19 19 C 1.53005 * 109.47094 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.46982 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47097 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99742 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00221 * 179.97438 * 21 20 19 24 24 N 1.31519 * 119.99615 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99983 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47425 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47227 * 120.00080 * 25 23 21 28 28 H 1.48506 * 109.47271 * 240.00247 * 25 23 21 29 29 H 1.09005 * 109.46684 * 299.99439 * 1 2 3 30 30 H 1.08992 * 109.47577 * 59.99311 * 1 2 3 31 31 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46958 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47126 * 300.00460 * 3 2 1 34 34 H 1.09005 * 109.46894 * 60.00689 * 3 2 1 35 35 H 1.08993 * 109.47519 * 299.99469 * 4 2 1 36 36 H 1.09000 * 109.47409 * 60.00299 * 4 2 1 37 37 H 1.09006 * 109.47149 * 179.97438 * 4 2 1 38 38 H 0.97005 * 120.00963 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47630 * 184.99905 * 11 9 8 40 40 H 1.09004 * 109.47346 * 305.00035 * 11 9 8 41 41 H 1.09004 * 115.54569 * 29.41561 * 12 11 9 42 42 H 1.08996 * 117.49957 * 359.97438 * 13 12 11 43 43 H 1.09000 * 117.50231 * 145.02449 * 13 12 11 44 44 H 1.09001 * 117.49423 * 214.97814 * 14 12 11 45 45 H 1.08996 * 117.49865 * 359.97186 * 14 12 11 46 46 H 0.96998 * 120.00125 * 359.97438 * 17 15 9 47 47 H 1.09000 * 109.47175 * 300.00022 * 18 17 15 48 48 H 1.09002 * 109.47092 * 59.99980 * 18 17 15 49 49 H 1.08992 * 109.47061 * 300.00193 * 19 18 17 50 50 H 1.09002 * 109.46935 * 60.00169 * 19 18 17 51 51 H 1.09000 * 109.47312 * 300.00322 * 20 19 18 52 52 H 1.09002 * 109.47067 * 60.00348 * 20 19 18 53 53 H 0.96997 * 119.99545 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1854 6 6 1.6523 -1.9725 1.3381 7 8 0.9509 -2.5095 0.5038 8 7 2.0674 -2.6656 2.4169 9 6 1.6742 -4.0671 2.5828 10 1 1.6284 -4.5496 1.6065 11 6 0.2993 -4.1355 3.2504 12 6 -0.7511 -3.5280 2.3184 13 6 -1.4739 -2.2667 2.7954 14 6 -2.2147 -3.6058 2.7574 15 6 2.6874 -4.7743 3.4456 16 8 3.6435 -4.1673 3.8796 17 7 2.5310 -6.0813 3.7349 18 6 3.5156 -6.7686 4.5741 19 6 3.1050 -8.2324 4.7473 20 6 4.1337 -8.9503 5.6232 21 6 3.7296 -10.3922 5.7933 22 1 2.8295 -10.7597 5.3232 23 6 4.5097 -11.2423 6.5481 24 7 5.6062 -10.7948 7.1201 25 14 4.0092 -13.0297 6.7582 26 1 2.7457 -13.2801 6.0194 27 1 5.0785 -13.9095 6.2217 28 1 3.8059 -13.3206 8.2003 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1299 -0.7209 -1.2497 38 1 2.6265 -2.2366 3.0835 39 1 0.0458 -5.1757 3.4546 40 1 0.3215 -3.5766 4.1861 41 1 -0.5400 -3.6144 1.2525 42 1 -1.2015 -1.8699 3.7733 43 1 -1.7389 -1.5236 2.0433 44 1 -2.9665 -3.7430 1.9802 45 1 -2.4293 -4.0901 3.7100 46 1 1.7661 -6.5667 3.3881 47 1 4.4954 -6.7195 4.0991 48 1 3.5606 -6.2863 5.5506 49 1 2.1253 -8.2811 5.2225 50 1 3.0597 -8.7149 3.7710 51 1 5.1132 -8.9015 5.1476 52 1 4.1794 -8.4679 6.5996 53 1 6.1548 -11.3928 7.6514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896166009.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -135.830135 kcal Electronic energy + Delta-G solvation = -30390.837270 eV Core-core repulsion = 26261.984974 eV Total energy + Delta-G solvation = -4128.852295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03146 -40.96876 -38.90988 -37.77397 -37.03533 -35.80105 -35.24962 -34.86626 -33.17857 -31.33441 -28.62019 -28.30438 -28.25751 -26.39988 -24.84749 -23.23243 -23.19064 -22.32697 -21.45926 -21.28918 -20.99557 -19.39715 -18.59567 -17.97773 -17.66934 -17.31237 -17.08431 -16.74071 -16.54393 -16.33773 -15.96052 -15.46863 -15.32249 -15.22090 -15.00420 -14.48982 -14.36946 -14.24862 -14.11011 -13.74075 -13.50367 -13.31726 -13.17578 -12.92331 -12.86810 -12.81084 -12.76572 -12.54958 -12.43613 -12.38255 -12.34355 -12.31157 -12.17185 -11.66352 -11.62389 -11.39839 -11.27470 -11.19447 -10.94255 -10.90378 -10.80546 -10.55152 -10.19047 -10.09645 -8.18976 -6.29886 1.05630 1.41941 1.42215 1.42776 1.55564 1.80289 2.12767 2.42937 2.95213 3.14738 3.15183 3.44226 3.77034 3.79905 3.85793 3.92245 3.99983 4.05733 4.14887 4.17937 4.24075 4.31936 4.57113 4.58229 4.66909 4.67333 4.71501 4.78170 4.81227 4.81745 4.86460 4.91500 4.92816 4.96359 4.97000 5.05981 5.11263 5.19196 5.22768 5.28606 5.35109 5.37409 5.40569 5.50489 5.54130 5.65415 5.72889 5.86003 6.23296 6.38799 6.44257 6.88287 7.08721 7.36925 7.39776 8.93191 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.001920 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.886528 B =14583.225358 C =15421.957118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.373 6.373 6 C 0.659 3.341 7 O -0.572 6.572 8 N -0.693 5.693 9 C 0.162 3.838 10 H 0.126 0.874 11 C -0.094 4.094 12 C -0.152 4.152 13 C -0.183 4.183 14 C -0.174 4.174 15 C 0.509 3.491 16 O -0.574 6.574 17 N -0.704 5.704 18 C 0.130 3.870 19 C -0.103 4.103 20 C 0.022 3.978 21 C -0.538 4.538 22 H 0.067 0.933 23 C -0.005 4.005 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.258 1.258 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.413 0.587 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.418 0.582 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.068 0.932 51 H -0.008 1.008 52 H -0.007 1.007 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.592 23.582 -15.933 32.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.288 6.288 6 C 0.413 3.587 7 O -0.462 6.462 8 N -0.353 5.353 9 C 0.054 3.946 10 H 0.143 0.857 11 C -0.132 4.132 12 C -0.170 4.170 13 C -0.220 4.220 14 C -0.211 4.211 15 C 0.295 3.705 16 O -0.454 6.454 17 N -0.356 5.356 18 C 0.006 3.994 19 C -0.141 4.141 20 C -0.015 4.015 21 C -0.576 4.576 22 H 0.085 0.915 23 C -0.202 4.202 24 N -0.575 5.575 25 Si 0.791 3.209 26 H -0.182 1.182 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.249 0.751 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.256 0.744 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.010 0.990 52 H 0.012 0.988 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.122 23.759 -15.984 32.383 hybrid contribution 0.382 -0.957 0.655 1.222 sum -14.740 22.802 -15.328 31.180 Atomic orbital electron populations 1.22464 0.93471 1.04159 1.03268 1.22384 0.94892 0.92357 0.81339 1.21895 1.02221 0.91172 1.04229 1.22478 1.01312 1.02560 0.97356 1.86325 1.71677 1.23247 1.47522 1.17857 0.78463 0.80756 0.81664 1.90806 1.41247 1.70466 1.43693 1.44330 1.55542 1.11273 1.24192 1.20722 0.92527 0.80701 1.00608 0.85651 1.21640 0.90347 1.03370 0.97891 1.22494 0.92455 1.01284 1.00731 1.22949 1.05433 0.91495 1.02092 1.23026 0.94549 1.00201 1.03339 1.20838 0.86332 0.82603 0.80774 1.90714 1.33403 1.66689 1.54573 1.45866 1.28340 1.09633 1.51746 1.21284 0.91444 0.92707 0.93919 1.21608 0.99933 0.91887 1.00653 1.18956 0.94008 0.94536 0.94039 1.21725 1.09086 0.96032 1.30807 0.91470 1.26016 0.94968 1.03788 0.95440 1.70117 1.15686 1.37380 1.34355 0.85384 0.78629 0.79030 0.77900 1.18153 1.20742 1.20659 0.92179 0.89461 0.91008 0.91685 0.87956 0.91342 0.91352 0.89194 0.92618 0.75057 0.87839 0.91050 0.86219 0.89489 0.89580 0.88444 0.88311 0.74416 0.93053 0.92684 0.91040 0.91319 0.99007 0.98843 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.37 71.98 0.60 -1.91 16 2 C 0.13 1.99 1.13 -10.79 -0.01 1.98 16 3 C -0.14 -1.48 8.85 71.98 0.64 -0.84 16 4 C -0.18 -2.82 8.37 71.98 0.60 -2.22 16 5 O -0.37 -7.79 9.94 -55.50 -0.55 -8.35 16 6 C 0.66 14.51 7.37 129.79 0.96 15.46 16 7 O -0.57 -13.15 8.47 19.81 0.17 -12.98 16 8 N -0.69 -14.82 4.93 -573.73 -2.83 -17.64 16 9 C 0.16 3.18 2.64 44.24 0.12 3.29 16 10 H 0.13 2.34 7.58 -2.39 -0.02 2.32 16 11 C -0.09 -1.52 5.11 30.59 0.16 -1.36 16 12 C -0.15 -2.55 4.18 -10.79 -0.05 -2.59 16 13 C -0.18 -3.01 10.18 30.62 0.31 -2.70 16 14 C -0.17 -2.56 10.26 30.62 0.31 -2.25 16 15 C 0.51 12.98 7.22 87.66 0.63 13.61 16 16 O -0.57 -19.33 15.84 -3.05 -0.05 -19.38 16 17 N -0.70 -16.96 5.42 -463.05 -2.51 -19.46 16 18 C 0.13 4.23 5.67 86.38 0.49 4.72 16 19 C -0.10 -3.72 5.27 30.60 0.16 -3.56 16 20 C 0.02 1.13 4.97 29.85 0.15 1.27 16 21 C -0.54 -29.43 9.11 25.60 0.23 -29.19 16 22 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 23 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 24 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 25 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.32 5.88 -2.39 -0.01 1.31 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.07 1.38 5.88 -2.39 -0.01 1.37 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.41 9.24 7.90 -92.70 -0.73 8.51 16 39 H 0.10 1.32 7.43 -2.39 -0.02 1.30 16 40 H 0.07 1.23 7.88 -2.39 -0.02 1.21 16 41 H 0.12 2.41 5.72 -2.39 -0.01 2.40 16 42 H 0.09 1.45 8.03 -2.39 -0.02 1.43 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.42 7.31 7.83 -92.71 -0.73 6.58 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 51 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 52 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 53 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -68.96 423.35 1.76 -67.20 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.56 Total: 27.58 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.77 Total: -6.09 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -5.05 Total: -93.33 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.43 Total: -40.71 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -68.96 1.76 -67.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896166009.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.631 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds