Wall clock time and date at job start Sat Apr 11 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 120.00235 * 2 1 4 4 H 1.07997 * 120.00334 * 156.41371 * 3 2 1 5 5 C 1.38817 * 119.99604 * 336.41414 * 3 2 1 6 6 N 1.31621 * 119.99934 * 330.38740 * 5 3 2 7 7 Si 1.86798 * 119.99828 * 150.39437 * 5 3 2 8 8 H 1.48506 * 109.46669 * 269.99541 * 7 5 3 9 9 H 1.48494 * 109.47198 * 29.99716 * 7 5 3 10 10 H 1.48502 * 109.46928 * 149.99782 * 7 5 3 11 11 C 1.46499 * 120.00216 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47373 * 270.00651 * 11 2 1 13 13 H 1.08995 * 110.32528 * 60.76050 * 12 11 2 14 14 C 1.54813 * 110.36151 * 183.10297 * 12 11 2 15 15 C 1.53151 * 103.55606 * 142.57810 * 14 12 11 16 16 C 1.53770 * 111.50422 * 120.81844 * 15 14 12 17 17 C 1.55164 * 101.44278 * 155.18317 * 16 15 14 18 18 N 1.47558 * 104.98705 * 324.38082 * 17 16 15 19 19 C 1.34777 * 125.67128 * 203.88297 * 18 17 16 20 20 O 1.21510 * 119.99942 * 180.02562 * 19 18 17 21 21 O 1.34633 * 120.00177 * 359.97438 * 19 18 17 22 22 C 1.45200 * 117.00240 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46827 * 60.00385 * 22 21 19 24 24 C 1.53003 * 109.47330 * 180.02562 * 22 21 19 25 25 C 1.52997 * 109.47282 * 300.00590 * 22 21 19 26 26 C 1.47370 * 108.65487 * 23.88549 * 18 17 16 27 27 C 1.53123 * 105.47846 * 359.61444 * 15 14 12 28 28 O 1.44558 * 110.35585 * 298.54321 * 12 11 2 29 29 H 1.09001 * 109.47066 * 92.96458 * 1 2 3 30 30 H 1.09000 * 109.47494 * 212.96653 * 1 2 3 31 31 H 1.08998 * 109.47352 * 332.97006 * 1 2 3 32 32 H 0.97003 * 119.99929 * 354.58799 * 6 5 3 33 33 H 1.09003 * 109.46366 * 30.00389 * 11 2 1 34 34 H 1.09002 * 109.47146 * 149.99838 * 11 2 1 35 35 H 1.09004 * 110.60955 * 261.09557 * 14 12 11 36 36 H 1.09003 * 110.60970 * 24.06090 * 14 12 11 37 37 H 1.09001 * 111.03517 * 273.21898 * 16 15 14 38 38 H 1.08999 * 111.03433 * 37.14141 * 16 15 14 39 39 H 1.08998 * 110.34013 * 205.50599 * 17 16 15 40 40 H 1.09000 * 110.33784 * 83.25502 * 17 16 15 41 41 H 1.09001 * 109.47216 * 59.99681 * 23 22 21 42 42 H 1.09000 * 109.47330 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.46855 * 300.00386 * 23 22 21 44 44 H 1.08992 * 109.46980 * 59.99898 * 24 22 21 45 45 H 1.09000 * 109.47087 * 180.02562 * 24 22 21 46 46 H 1.09001 * 109.46813 * 300.00380 * 24 22 21 47 47 H 1.08997 * 109.47391 * 59.99571 * 25 22 21 48 48 H 1.09000 * 109.47022 * 179.97438 * 25 22 21 49 49 H 1.09002 * 109.47049 * 299.99441 * 25 22 21 50 50 H 1.08997 * 109.97893 * 238.61019 * 26 18 17 51 51 H 1.09005 * 109.98119 * 117.32230 * 26 18 17 52 52 H 1.09007 * 110.43208 * 218.23988 * 27 15 14 53 53 H 1.09004 * 110.53542 * 95.79801 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1620 1.2250 0.3742 5 6 1.5426 2.3379 -0.4810 6 7 0.6276 2.2551 -1.4235 7 14 2.0244 4.0055 0.2091 8 1 1.1561 4.3306 1.3692 9 1 3.4428 3.9689 0.6472 10 1 1.8571 5.0426 -0.8404 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4432 13 1 1.5077 -1.8573 1.9665 14 6 3.2935 -3.0093 1.4685 15 6 4.2195 -2.8142 2.6726 16 6 4.0263 -3.9252 3.7181 17 6 5.4022 -3.9155 4.4354 18 7 6.3835 -3.6173 3.3745 19 6 7.6918 -3.9398 3.4010 20 8 8.4099 -3.6422 2.4670 21 8 8.2034 -4.5906 4.4627 22 6 9.6201 -4.9062 4.4226 23 6 10.4277 -3.6119 4.3056 24 6 10.0157 -5.6406 5.7052 25 6 9.9098 -5.7989 3.2143 26 6 5.6950 -2.9082 2.2813 27 6 3.8638 -1.4384 3.2430 28 8 3.2619 -0.7307 2.1329 29 1 -0.3633 -0.0531 -1.0263 30 1 -0.3634 -0.8622 0.5592 31 1 -0.3634 0.9154 0.4670 32 1 0.4334 1.3994 -1.8372 33 1 1.6084 -2.0285 -0.5130 34 1 3.1499 -1.1386 -0.5134 35 1 2.6522 -3.8786 1.6146 36 1 3.8733 -3.1090 0.5509 37 1 3.2225 -3.6753 4.4106 38 1 3.8422 -4.8863 3.2381 39 1 5.6062 -4.8910 4.8768 40 1 5.4247 -3.1400 5.2011 41 1 10.2213 -2.9758 5.1664 42 1 11.4913 -3.8486 4.2760 43 1 10.1458 -3.0891 3.3917 44 1 9.4403 -6.5625 5.7881 45 1 11.0793 -5.8770 5.6753 46 1 9.8092 -5.0048 6.5662 47 1 9.6280 -5.2762 2.3003 48 1 10.9734 -6.0354 3.1840 49 1 9.3345 -6.7210 3.2976 50 1 5.7988 -3.4672 1.3514 51 1 6.1135 -1.9085 2.1641 52 1 4.7627 -0.9225 3.5807 53 1 3.1519 -1.5367 4.0626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929490549.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:28 Heat of formation + Delta-G solvation = -117.921530 kcal Electronic energy + Delta-G solvation = -31326.324933 eV Core-core repulsion = 27198.249213 eV Total energy + Delta-G solvation = -4128.075720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10664 -41.19313 -38.89562 -37.72814 -37.16550 -35.14322 -33.61335 -33.44278 -31.32141 -30.38523 -28.39311 -28.30539 -28.11607 -27.25379 -26.68166 -24.51445 -23.41222 -22.76833 -21.79478 -20.60898 -20.39835 -19.37498 -18.94338 -17.73901 -17.53352 -16.92481 -16.57703 -16.49778 -16.27450 -15.97310 -15.85658 -15.56290 -15.32795 -15.25441 -14.81102 -14.56317 -14.28302 -14.12606 -13.77385 -13.49648 -13.36223 -13.19049 -13.16936 -13.03517 -12.93571 -12.89945 -12.87821 -12.69105 -12.54763 -12.47209 -12.41909 -12.29829 -12.25700 -11.92955 -11.85389 -11.60263 -11.53190 -11.46468 -11.42272 -11.15447 -10.54181 -10.36056 -9.86498 -8.91061 -8.18628 -5.27674 0.97996 1.57243 1.64144 1.67714 1.82930 2.68111 2.82650 3.01115 3.21013 3.32303 3.36422 3.61734 3.67963 3.73369 3.77717 3.92739 3.99142 4.05596 4.16475 4.26968 4.39074 4.42869 4.54076 4.55988 4.58838 4.59248 4.63152 4.66728 4.70984 4.71535 4.74090 4.78534 4.81866 4.84884 4.86502 4.89145 4.96243 5.00477 5.06322 5.09267 5.12877 5.16153 5.18311 5.25668 5.28828 5.32334 5.42123 5.98204 6.13587 6.34777 6.46766 7.12128 7.18707 7.86945 8.22192 9.06251 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.002369 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.010924 B =11815.637663 C =12474.431165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.618 5.618 3 C -0.330 4.330 4 H 0.045 0.955 5 C -0.082 4.082 6 N -0.945 5.945 7 Si 1.108 2.892 8 H -0.286 1.286 9 H -0.281 1.281 10 H -0.294 1.294 11 C 0.150 3.850 12 C 0.064 3.936 13 H 0.062 0.938 14 C -0.123 4.123 15 C -0.094 4.094 16 C -0.106 4.106 17 C 0.101 3.899 18 N -0.606 5.606 19 C 0.660 3.340 20 O -0.597 6.597 21 O -0.362 6.362 22 C 0.124 3.876 23 C -0.181 4.181 24 C -0.133 4.133 25 C -0.179 4.179 26 C 0.147 3.853 27 C 0.052 3.948 28 O -0.385 6.385 29 H -0.003 1.003 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.254 0.746 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.052 0.948 52 H 0.079 0.921 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.044 -22.292 17.898 31.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.341 5.341 3 C -0.461 4.461 4 H 0.063 0.937 5 C -0.278 4.278 6 N -0.589 5.589 7 Si 0.934 3.066 8 H -0.212 1.212 9 H -0.206 1.206 10 H -0.221 1.221 11 C 0.024 3.976 12 C 0.004 3.996 13 H 0.080 0.920 14 C -0.161 4.161 15 C -0.095 4.095 16 C -0.144 4.144 17 C -0.021 4.021 18 N -0.347 5.347 19 C 0.416 3.584 20 O -0.489 6.489 21 O -0.276 6.276 22 C 0.087 3.913 23 C -0.238 4.238 24 C -0.190 4.190 25 C -0.236 4.236 26 C 0.025 3.975 27 C -0.025 4.025 28 O -0.304 6.304 29 H 0.015 0.985 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.121 0.879 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.110 0.890 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.071 0.929 52 H 0.098 0.902 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.128 -20.412 17.547 30.400 hybrid contribution 0.417 -1.223 -0.514 1.391 sum 14.546 -21.635 17.033 31.141 Atomic orbital electron populations 1.20812 0.83597 0.98602 0.96936 1.44100 1.01433 1.02270 1.86320 1.20049 1.00253 0.88225 1.37540 0.93699 1.26908 0.99522 1.05109 0.96229 1.70886 1.38388 1.27288 1.22297 0.82928 0.75720 0.72571 0.75357 1.21248 1.20648 1.22076 1.21053 0.95562 0.87435 0.93563 1.23782 0.93651 0.87338 0.94861 0.92009 1.22850 0.97565 0.98264 0.97420 1.21917 0.92981 0.97171 0.97409 1.22803 0.96656 0.98103 0.96795 1.22640 0.87020 1.02763 0.89637 1.47412 1.05165 1.59397 1.22747 1.17689 0.81972 0.77443 0.81298 1.90908 1.58977 1.60070 1.38914 1.86305 1.29616 1.70412 1.41298 1.22452 0.74531 0.95652 0.98618 1.22484 1.01553 0.97041 1.02756 1.21870 1.03246 1.00290 0.93593 1.22467 1.03851 0.99378 0.97944 1.21781 0.90687 0.95910 0.89118 1.23462 0.98064 0.90582 0.90419 1.89462 1.64275 1.34252 1.42457 0.98502 0.93076 0.96005 0.93554 0.91014 0.94626 0.86969 0.90633 0.86901 0.88375 0.88554 0.90327 0.92033 0.88934 0.92547 0.90894 0.87929 0.91180 0.92478 0.89006 0.91678 0.91176 0.92947 0.90248 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.04 8.98 127.77 1.15 8.19 16 2 N -0.62 -31.68 2.77 -726.94 -2.01 -33.69 16 3 C -0.33 -19.39 8.97 84.03 0.75 -18.63 16 4 H 0.05 2.77 7.69 -2.91 -0.02 2.74 16 5 C -0.08 -4.89 4.61 84.86 0.39 -4.49 16 6 N -0.95 -59.59 12.73 21.65 0.28 -59.32 16 7 Si 1.11 54.56 30.01 68.60 2.06 56.62 16 8 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 9 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 11 C 0.15 6.07 5.36 86.38 0.46 6.53 16 12 C 0.06 2.08 3.59 31.21 0.11 2.19 16 13 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 14 C -0.12 -2.76 5.92 31.26 0.18 -2.57 16 15 C -0.09 -1.95 0.80 -51.85 -0.04 -1.99 16 16 C -0.11 -1.36 5.92 31.60 0.19 -1.17 16 17 C 0.10 1.50 6.87 86.92 0.60 2.10 16 18 N -0.61 -13.82 3.34 -943.06 -3.15 -16.97 16 19 C 0.66 17.53 7.93 129.79 1.03 18.55 16 20 O -0.60 -19.39 12.21 19.81 0.24 -19.15 16 21 O -0.36 -7.93 9.42 -55.42 -0.52 -8.45 16 22 C 0.12 2.15 1.13 -10.79 -0.01 2.13 16 23 C -0.18 -3.33 8.37 71.98 0.60 -2.73 16 24 C -0.13 -1.34 8.85 71.98 0.64 -0.70 16 25 C -0.18 -3.10 8.37 71.98 0.60 -2.50 16 26 C 0.15 3.63 6.00 86.19 0.52 4.15 16 27 C 0.05 1.35 6.66 72.02 0.48 1.83 16 28 O -0.39 -14.87 10.51 -148.98 -1.57 -16.43 16 29 H 0.00 -0.15 6.87 -2.39 -0.02 -0.17 16 30 H 0.05 2.01 8.09 -2.39 -0.02 2.00 16 31 H 0.02 1.14 7.26 -2.39 -0.02 1.13 16 32 H 0.25 16.19 6.37 -92.71 -0.59 15.60 16 33 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 34 H 0.04 1.56 8.03 -2.39 -0.02 1.54 16 35 H 0.11 1.80 7.65 -2.38 -0.02 1.78 16 36 H 0.08 1.80 7.17 -2.39 -0.02 1.78 16 37 H 0.11 1.05 7.65 -2.39 -0.02 1.03 16 38 H 0.10 1.03 7.92 -2.39 -0.02 1.01 16 39 H 0.10 1.17 8.05 -2.39 -0.02 1.16 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.43 5.88 -2.39 -0.01 1.42 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.07 1.80 7.50 -2.39 -0.02 1.78 16 51 H 0.05 1.56 7.63 -2.38 -0.02 1.55 16 52 H 0.08 2.12 7.66 -2.38 -0.02 2.11 16 53 H 0.08 1.72 7.59 -2.39 -0.02 1.71 16 Total: -1.00 -78.18 406.90 4.03 -74.15 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.05 Total: 12.35 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.65 Total: 10.89 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.89 Total: -109.98 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.85 Total: -44.04 kcal Atomic # 14 Polarization: 54.56 SS G_CDS: 2.06 Total: 56.62 kcal Total: -78.18 4.03 -74.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929490549.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.767 kcal (2) G-P(sol) polarization free energy of solvation -78.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds