Wall clock time and date at job start Sat Apr 11 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47454 * 2 1 4 4 C 1.53003 * 109.47278 * 239.99596 * 2 1 3 5 5 O 1.45202 * 109.47239 * 119.99682 * 2 1 3 6 6 C 1.34639 * 116.99795 * 60.00054 * 5 2 1 7 7 O 1.21511 * 120.00165 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99835 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00169 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47184 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47623 * 59.99888 * 10 9 8 12 12 C 1.52999 * 109.46798 * 299.99588 * 10 9 8 13 13 C 1.53001 * 109.47125 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47264 * 179.97438 * 13 10 9 15 15 O 1.21286 * 119.99823 * 359.97438 * 14 13 10 16 16 N 1.34780 * 120.00109 * 180.02562 * 14 13 10 17 17 C 1.37086 * 120.00182 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00116 * 221.62455 * 17 16 14 19 19 C 1.38950 * 120.00237 * 41.61799 * 17 16 14 20 20 N 1.31411 * 119.99684 * 23.52101 * 19 17 16 21 21 Si 1.86798 * 120.00272 * 203.51539 * 19 17 16 22 22 H 1.48502 * 109.46965 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47295 * 299.99992 * 21 19 17 24 24 H 1.48505 * 109.47080 * 60.00088 * 21 19 17 25 25 C 1.46508 * 119.99580 * 359.97438 * 16 14 13 26 26 C 1.53002 * 117.49453 * 191.78152 * 25 16 14 27 27 C 1.53004 * 60.00148 * 252.51359 * 26 25 16 28 28 H 1.09005 * 109.46874 * 300.00129 * 1 2 3 29 29 H 1.08996 * 109.47022 * 60.00026 * 1 2 3 30 30 H 1.09006 * 109.46655 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47666 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46709 * 299.99888 * 3 2 1 33 33 H 1.08997 * 109.47307 * 59.99441 * 3 2 1 34 34 H 1.09000 * 109.47096 * 300.00316 * 4 2 1 35 35 H 1.08996 * 109.46785 * 60.00233 * 4 2 1 36 36 H 1.08993 * 109.47209 * 179.97438 * 4 2 1 37 37 H 0.97002 * 120.00037 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.46772 * 59.99759 * 9 8 6 39 39 H 1.09005 * 109.46517 * 300.00271 * 9 8 6 40 40 H 1.08999 * 109.47211 * 180.02562 * 11 10 9 41 41 H 1.09006 * 109.46984 * 299.99767 * 11 10 9 42 42 H 1.09005 * 109.47182 * 59.99445 * 11 10 9 43 43 H 1.08997 * 109.47302 * 300.00151 * 12 10 9 44 44 H 1.09006 * 109.47298 * 60.00546 * 12 10 9 45 45 H 1.09008 * 109.47093 * 180.02562 * 12 10 9 46 46 H 1.09005 * 109.47177 * 59.98976 * 13 10 9 47 47 H 1.09005 * 109.46829 * 299.99449 * 13 10 9 48 48 H 0.97003 * 120.00092 * 5.80549 * 20 19 17 49 49 H 1.08999 * 115.55190 * 337.49115 * 25 16 14 50 50 H 1.08996 * 117.49764 * 0.02562 * 26 25 16 51 51 H 1.08999 * 117.49659 * 145.02224 * 26 25 16 52 52 H 1.08998 * 117.50051 * 252.51877 * 27 26 25 53 53 H 1.09000 * 117.51908 * 107.48332 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9517 -2.5097 0.5037 8 7 2.0673 -2.6653 2.4173 9 6 1.6741 -4.0668 2.5833 10 6 2.2731 -4.6143 3.8804 11 6 1.7571 -3.7960 5.0657 12 6 3.7987 -4.5165 3.8186 13 6 1.8630 -6.0781 4.0535 14 6 2.4535 -6.6176 5.3307 15 8 3.1356 -5.9018 6.0331 16 7 2.2245 -7.8957 5.6919 17 6 2.7620 -8.3866 6.8535 18 1 3.1859 -9.3797 6.8749 19 6 2.7617 -7.6065 8.0033 20 7 1.8839 -6.6381 8.1399 21 14 4.0088 -7.9342 9.3548 22 1 3.7987 -6.9719 10.4662 23 1 3.8373 -9.3196 9.8613 24 1 5.3814 -7.7721 8.8118 25 6 1.4010 -8.7604 4.8430 26 6 0.9479 -10.0997 5.4277 27 6 2.0275 -10.0641 4.3440 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.6269 -2.2364 3.0834 38 1 2.0414 -4.6497 1.7386 39 1 0.5872 -4.1364 2.6276 40 1 2.1843 -4.1858 5.9897 41 1 2.0497 -2.7533 4.9422 42 1 0.6702 -3.8657 5.1096 43 1 4.1663 -5.0995 2.9742 44 1 4.0913 -3.4737 3.6951 45 1 4.2255 -4.9070 4.7425 46 1 2.2309 -6.6608 3.2089 47 1 0.7761 -6.1482 4.0973 48 1 1.1838 -6.5212 7.4788 49 1 0.7126 -8.2444 4.1737 50 1 1.2622 -10.3373 6.4440 51 1 -0.0388 -10.4650 5.1432 52 1 1.7510 -10.4058 3.3466 53 1 3.0524 -10.2782 4.6470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930615321.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:01 Heat of formation + Delta-G solvation = -107.590800 kcal Electronic energy + Delta-G solvation = -31455.925314 eV Core-core repulsion = 27328.297568 eV Total energy + Delta-G solvation = -4127.627746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85633 -41.01061 -39.22339 -38.10565 -37.18176 -35.34965 -34.85392 -33.96894 -32.77135 -29.32110 -28.34167 -28.28353 -28.14545 -27.65581 -26.17970 -23.45090 -23.15327 -22.87712 -21.48585 -21.18522 -19.95278 -19.03754 -18.53546 -18.06108 -17.53244 -17.30056 -16.53938 -16.22820 -16.11209 -15.84793 -15.65044 -15.52549 -15.28625 -15.13187 -14.85778 -14.59184 -14.36643 -14.08855 -13.86975 -13.49059 -13.33102 -13.17366 -13.02994 -12.88837 -12.84825 -12.75642 -12.64178 -12.44884 -12.34177 -12.29343 -12.21392 -11.99064 -11.97204 -11.73562 -11.72087 -11.69890 -11.63348 -11.37193 -11.23997 -11.11080 -10.58682 -10.19579 -9.72904 -9.19510 -8.44448 -5.94816 1.18188 1.51177 1.61740 1.77165 1.78080 2.21757 2.50023 2.96625 3.11725 3.20755 3.39827 3.68224 3.77350 3.81357 3.81729 3.84466 3.96790 4.08029 4.16317 4.23759 4.35147 4.42275 4.51254 4.54394 4.63146 4.63614 4.66583 4.78371 4.78816 4.81553 4.83468 4.85525 4.86590 4.89507 4.95786 5.03372 5.11719 5.13230 5.14231 5.22996 5.28042 5.30393 5.38569 5.42143 5.57784 5.59007 5.68314 5.80939 6.27890 6.39539 6.93961 7.28141 7.33402 7.63957 8.27464 8.79344 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.002515 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.929186 B =11131.356586 C =12033.521238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.372 6.372 6 C 0.647 3.353 7 O -0.592 6.592 8 N -0.699 5.699 9 C 0.159 3.841 10 C -0.041 4.041 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.113 4.113 14 C 0.454 3.546 15 O -0.562 6.562 16 N -0.452 5.452 17 C -0.431 4.431 18 H 0.060 0.940 19 C -0.003 4.003 20 N -0.872 5.872 21 Si 1.111 2.889 22 H -0.289 1.289 23 H -0.265 1.265 24 H -0.287 1.287 25 C 0.044 3.956 26 C -0.177 4.177 27 C -0.179 4.179 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.411 0.589 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.256 0.744 49 H 0.134 0.866 50 H 0.075 0.925 51 H 0.117 0.883 52 H 0.124 0.876 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 9.857 -17.496 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.287 6.287 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.359 5.359 9 C 0.037 3.963 10 C -0.042 4.042 11 C -0.201 4.201 12 C -0.201 4.201 13 C -0.154 4.154 14 C 0.244 3.756 15 O -0.444 6.444 16 N -0.173 5.173 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.211 4.211 20 N -0.505 5.505 21 Si 0.934 3.066 22 H -0.215 1.215 23 H -0.190 1.190 24 H -0.214 1.214 25 C -0.061 4.061 26 C -0.214 4.214 27 C -0.218 4.218 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.249 0.751 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.066 0.934 49 H 0.151 0.849 50 H 0.094 0.906 51 H 0.135 0.865 52 H 0.142 0.858 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.740 10.581 -16.141 19.378 hybrid contribution -0.424 -0.700 -0.802 1.146 sum -2.164 9.881 -16.943 19.733 Atomic orbital electron populations 1.22475 0.93977 1.03689 1.03545 1.22440 0.94639 0.92731 0.81528 1.21889 1.02403 0.90697 1.04312 1.22468 1.01579 1.02262 0.97308 1.86321 1.71671 1.23109 1.47594 1.18180 0.78765 0.80828 0.82223 1.90878 1.42257 1.71003 1.44146 1.44783 1.55106 1.12711 1.23291 1.21293 0.99560 0.78687 0.96776 1.20300 0.96476 0.93672 0.93723 1.21974 0.99862 0.99097 0.99204 1.21984 0.94165 1.01461 1.02522 1.21543 1.01677 0.95928 0.96243 1.20790 0.83747 0.82901 0.88169 1.90473 1.41596 1.56716 1.55567 1.43271 1.44349 1.10061 1.19652 1.19795 1.42773 1.04127 0.89143 0.92211 1.27151 0.99363 0.93884 1.00663 1.70676 1.12204 1.31996 1.35597 0.82975 0.73957 0.76403 0.73254 1.21494 1.19015 1.21375 1.22114 0.98338 0.87038 0.98637 1.23111 0.99689 1.00118 0.98518 1.23245 0.97580 1.01583 0.99366 0.92190 0.88913 0.91955 0.91278 0.87779 0.91384 0.91920 0.88950 0.92053 0.75138 0.90579 0.91164 0.92325 0.92267 0.93709 0.92677 0.92174 0.92304 0.88125 0.89208 0.93413 0.84855 0.90617 0.86501 0.85763 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 8.37 71.98 0.60 -2.73 16 2 C 0.12 2.31 1.13 -10.79 -0.01 2.30 16 3 C -0.14 -1.69 8.85 71.98 0.64 -1.06 16 4 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 5 O -0.37 -9.00 9.94 -55.48 -0.55 -9.56 16 6 C 0.65 17.53 8.06 129.79 1.05 18.58 16 7 O -0.59 -18.21 11.88 19.81 0.24 -17.98 16 8 N -0.70 -17.48 4.96 -590.84 -2.93 -20.41 16 9 C 0.16 4.10 4.56 86.38 0.39 4.49 16 10 C -0.04 -1.24 0.53 -52.18 -0.03 -1.27 16 11 C -0.14 -4.97 8.00 71.98 0.58 -4.39 16 12 C -0.14 -4.57 8.00 71.98 0.58 -4.00 16 13 C -0.11 -3.78 3.28 29.85 0.10 -3.68 16 14 C 0.45 20.91 5.83 87.66 0.51 21.42 16 15 O -0.56 -30.09 9.04 -3.05 -0.03 -30.12 16 16 N -0.45 -21.47 2.64 -613.11 -1.62 -23.09 16 17 C -0.43 -23.32 7.70 84.04 0.65 -22.67 16 18 H 0.06 3.24 7.53 -2.91 -0.02 3.22 16 19 C 0.00 -0.20 4.20 84.93 0.36 0.16 16 20 N -0.87 -52.44 12.26 21.66 0.27 -52.18 16 21 Si 1.11 51.79 29.98 68.60 2.06 53.85 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 C 0.04 1.60 6.06 44.99 0.27 1.87 16 26 C -0.18 -6.00 9.82 30.60 0.30 -5.70 16 27 C -0.18 -5.64 10.18 30.60 0.31 -5.32 16 28 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.52 5.88 -2.38 -0.01 1.50 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.50 5.88 -2.39 -0.01 1.48 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.41 9.54 6.27 -92.71 -0.58 8.96 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.06 2.64 5.51 -2.39 -0.01 2.63 16 41 H 0.06 1.75 6.86 -2.38 -0.02 1.74 16 42 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.64 6.86 -2.38 -0.02 1.62 16 45 H 0.06 2.40 5.51 -2.38 -0.01 2.39 16 46 H 0.10 2.90 8.11 -2.38 -0.02 2.88 16 47 H 0.09 2.75 7.59 -2.38 -0.02 2.73 16 48 H 0.26 15.63 7.36 -92.71 -0.68 14.94 16 49 H 0.13 4.06 6.72 -2.39 -0.02 4.04 16 50 H 0.08 3.07 6.94 -2.39 -0.02 3.05 16 51 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 52 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 53 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -71.41 405.97 4.72 -66.68 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: 0.41 Total: 37.45 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 6.89 Total: -4.64 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -4.29 Total: -95.68 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -0.34 Total: -57.66 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.06 Total: 53.85 kcal Total: -71.41 4.72 -66.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615321.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.907 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds