Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 C 1.53001 * 109.46964 * 240.00734 * 2 1 3 5 5 O 1.45193 * 109.47552 * 120.00161 * 2 1 3 6 6 C 1.34642 * 116.99943 * 59.99941 * 5 2 1 7 7 O 1.21520 * 119.99720 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00186 * 179.97438 * 6 5 2 9 9 C 1.47060 * 136.05724 * 359.63184 * 8 6 5 10 10 C 1.53762 * 87.88959 * 152.96105 * 9 8 6 11 11 N 1.46901 * 114.08567 * 139.77754 * 10 9 8 12 12 C 1.46905 * 110.99478 * 210.51498 * 11 10 9 13 13 C 1.53002 * 109.47050 * 294.04174 * 12 11 10 14 14 O 1.42896 * 109.47014 * 66.30374 * 13 12 11 15 15 C 1.42902 * 114.00331 * 175.25152 * 14 13 12 16 16 C 1.50697 * 109.47509 * 184.12849 * 15 14 13 17 17 H 1.08006 * 119.99582 * 5.26857 * 16 15 14 18 18 C 1.37871 * 120.00400 * 185.26670 * 16 15 14 19 19 N 1.31510 * 120.00672 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99459 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47031 * 90.00228 * 20 18 16 22 22 H 1.48506 * 109.46777 * 209.99837 * 20 18 16 23 23 H 1.48502 * 109.47216 * 329.99776 * 20 18 16 24 24 C 1.46896 * 110.99612 * 86.56641 * 11 10 9 25 25 C 1.53002 * 117.49848 * 258.01344 * 24 11 10 26 26 C 1.53004 * 117.49550 * 189.35808 * 24 11 10 27 27 C 1.47069 * 136.05428 * 179.97438 * 8 6 5 28 28 H 1.09008 * 109.46909 * 299.99507 * 1 2 3 29 29 H 1.09000 * 109.47443 * 59.99458 * 1 2 3 30 30 H 1.09000 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47437 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47375 * 300.00584 * 3 2 1 33 33 H 1.09000 * 109.47072 * 60.00532 * 3 2 1 34 34 H 1.09000 * 109.46765 * 299.99793 * 4 2 1 35 35 H 1.08996 * 109.47545 * 59.99309 * 4 2 1 36 36 H 1.08999 * 109.47398 * 180.02562 * 4 2 1 37 37 H 1.09001 * 113.46883 * 267.68980 * 9 8 6 38 38 H 1.08998 * 113.47013 * 38.13732 * 9 8 6 39 39 H 1.09000 * 114.57315 * 272.66802 * 10 9 8 40 40 H 1.08997 * 109.47165 * 54.05027 * 12 11 10 41 41 H 1.08998 * 109.46353 * 174.04420 * 12 11 10 42 42 H 1.09000 * 109.46705 * 186.29567 * 13 12 11 43 43 H 1.09000 * 109.47499 * 306.29964 * 13 12 11 44 44 H 1.08995 * 109.46780 * 304.13601 * 15 14 13 45 45 H 1.09003 * 109.46586 * 64.12794 * 15 14 13 46 46 H 0.97000 * 120.00605 * 179.97438 * 19 18 16 47 47 H 1.09000 * 115.55771 * 43.68492 * 24 11 10 48 48 H 1.08998 * 117.49808 * 0.02562 * 25 24 11 49 49 H 1.09005 * 117.49811 * 145.01920 * 25 24 11 50 50 H 1.09006 * 117.49768 * 214.97854 * 26 24 11 51 51 H 1.08991 * 117.50279 * 359.97293 * 26 24 11 52 52 H 1.08995 * 113.46869 * 321.86568 * 27 8 6 53 53 H 1.08999 * 113.46463 * 92.31146 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0682 -2.6658 2.4164 9 6 2.8987 -2.3885 3.5980 10 6 2.1053 -3.4765 4.3404 11 7 2.9268 -4.3298 5.2094 12 6 2.3634 -5.6832 5.3028 13 6 1.0123 -5.6250 6.0186 14 8 0.0759 -4.9091 5.2108 15 6 -1.2515 -4.8881 5.7398 16 6 -2.1703 -4.1989 4.7643 17 1 -1.7990 -3.8911 3.7979 18 6 -3.4848 -3.9611 5.1053 19 7 -4.2868 -3.3601 4.2538 20 14 -4.1267 -4.4929 6.7771 21 1 -3.9336 -3.3918 7.7545 22 1 -5.5728 -4.8141 6.6728 23 1 -3.3841 -5.6954 7.2329 24 6 3.0810 -3.7306 6.5417 25 6 4.4048 -3.0290 6.8519 26 6 4.0849 -4.3800 7.4965 27 6 1.8961 -4.0346 2.9261 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7215 -1.2492 37 1 3.9504 -2.6380 3.4575 38 1 2.7529 -1.3884 4.0060 39 1 1.1928 -3.1238 4.8209 40 1 2.2266 -6.0898 4.3008 41 1 3.0448 -6.3224 5.8643 42 1 0.6467 -6.6378 6.1874 43 1 1.1297 -5.1167 6.9756 44 1 -1.5941 -5.9100 5.9019 45 1 -1.2565 -4.3486 6.6870 46 1 -5.2118 -3.1932 4.4937 47 1 2.1743 -3.3089 6.9755 48 1 5.1611 -3.0117 6.0672 49 1 4.3690 -2.1459 7.4899 50 1 3.8387 -4.3853 8.5583 51 1 4.6305 -5.2521 7.1362 52 1 0.8963 -4.4365 2.7617 53 1 2.6834 -4.7182 2.6083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930868599.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -68.494360 kcal Electronic energy + Delta-G solvation = -31784.646235 eV Core-core repulsion = 27658.713838 eV Total energy + Delta-G solvation = -4125.932397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.00595 -40.89036 -39.10566 -38.07157 -37.53663 -35.21847 -35.00298 -34.40491 -31.11090 -29.94633 -28.41121 -28.34324 -28.31446 -27.03897 -24.31496 -23.83343 -23.65303 -22.97655 -21.83474 -20.62868 -20.24156 -19.04103 -18.89375 -17.93505 -17.68130 -17.46068 -17.16441 -16.98153 -16.39096 -16.28360 -15.87080 -15.68569 -15.30615 -15.01492 -14.74798 -14.67283 -14.44590 -14.24709 -13.84284 -13.54962 -13.42224 -13.36031 -13.25606 -13.07335 -13.04022 -12.92889 -12.89009 -12.72444 -12.63813 -12.49761 -12.33633 -12.26704 -12.05625 -11.86142 -11.57844 -11.43390 -11.38112 -11.24598 -11.15265 -10.95879 -10.89860 -10.34336 -9.87115 -9.32817 -8.40085 -6.48350 0.90798 1.27266 1.30614 1.41517 1.70965 2.24373 2.66577 2.89211 2.92414 2.97266 3.08981 3.39891 3.72724 3.76519 3.91383 3.99248 4.11679 4.16434 4.19640 4.23453 4.27781 4.31969 4.45377 4.49701 4.52576 4.54874 4.56756 4.59511 4.61332 4.70533 4.72058 4.76147 4.79497 4.85290 4.88329 4.91119 4.94867 4.95940 5.09109 5.09801 5.15929 5.25166 5.27597 5.31945 5.41288 5.44781 5.45996 5.89592 5.98306 6.18146 6.56921 6.63087 6.71771 7.16212 7.20489 8.77378 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007356 B = 0.004331 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.522265 B = 6463.429145 C = 9362.366662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.122 3.878 3 C -0.130 4.130 4 C -0.176 4.176 5 O -0.364 6.364 6 C 0.674 3.326 7 O -0.600 6.600 8 N -0.641 5.641 9 C 0.127 3.873 10 C 0.071 3.929 11 N -0.475 5.475 12 C 0.063 3.937 13 C 0.013 3.987 14 O -0.392 6.392 15 C 0.185 3.815 16 C -0.537 4.537 17 H 0.022 0.978 18 C 0.011 3.989 19 N -0.944 5.944 20 Si 0.956 3.044 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.245 1.245 24 C -0.020 4.020 25 C -0.151 4.151 26 C -0.153 4.153 27 C 0.142 3.858 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.008 0.992 45 H 0.005 0.995 46 H 0.271 0.729 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.109 0.891 52 H 0.048 0.952 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.761 3.300 2.177 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.086 3.914 3 C -0.187 4.187 4 C -0.233 4.233 5 O -0.279 6.279 6 C 0.430 3.570 7 O -0.492 6.492 8 N -0.384 5.384 9 C 0.005 3.995 10 C -0.038 4.038 11 N -0.198 5.198 12 C -0.065 4.065 13 C -0.065 4.065 14 O -0.312 6.312 15 C 0.109 3.891 16 C -0.575 4.575 17 H 0.041 0.959 18 C -0.186 4.186 19 N -0.583 5.583 20 Si 0.777 3.223 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.168 1.168 24 C -0.129 4.129 25 C -0.189 4.189 26 C -0.191 4.191 27 C 0.021 3.979 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.141 0.859 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.025 0.975 45 H 0.023 0.977 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.125 0.875 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.127 0.873 52 H 0.066 0.934 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 21.815 3.458 1.246 22.122 hybrid contribution -2.317 -0.239 0.687 2.429 sum 19.498 3.219 1.933 19.856 Atomic orbital electron populations 1.22501 0.95184 1.03001 1.03381 1.22496 0.93789 0.93338 0.81771 1.21864 1.02722 0.89795 1.04337 1.22445 1.01917 1.01827 0.97124 1.86290 1.71328 1.22495 1.47740 1.17418 0.78488 0.80833 0.80230 1.90895 1.42871 1.71526 1.43909 1.47995 1.53348 1.15433 1.21587 1.23255 0.96417 0.99545 0.80279 1.23105 0.94952 0.94430 0.91361 1.62150 1.46294 1.01557 1.09824 1.22416 0.91423 0.90659 1.01975 1.23440 0.91713 0.96225 0.95169 1.87952 1.18928 1.74843 1.49459 1.20192 0.80780 0.94893 0.93267 1.21094 0.95362 1.39224 1.01799 0.95942 1.25866 0.96368 0.94237 1.02174 1.70064 1.06813 1.43126 1.38337 0.85603 0.78152 0.80164 0.78337 1.18536 1.19997 1.16813 1.22352 0.94046 1.05927 0.90532 1.23105 0.96901 0.95996 1.02873 1.23095 1.00779 0.97528 0.97655 1.23037 1.01784 0.82816 0.90305 0.92950 0.88367 0.93338 0.90363 0.87512 0.91650 0.92791 0.88605 0.91097 0.86349 0.90291 0.91346 0.90154 0.85937 0.92979 0.93235 0.97480 0.97713 0.91954 0.91393 0.87549 0.88191 0.87980 0.87276 0.93350 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.76 8.37 71.98 0.60 -5.16 16 2 C 0.12 3.39 1.13 -10.79 -0.01 3.38 16 3 C -0.13 -2.41 8.85 71.98 0.64 -1.77 16 4 C -0.18 -4.48 8.37 71.98 0.60 -3.87 16 5 O -0.36 -12.37 9.91 -55.51 -0.55 -12.92 16 6 C 0.67 26.92 8.26 129.79 1.07 27.99 16 7 O -0.60 -27.84 12.66 19.78 0.25 -27.59 16 8 N -0.64 -22.90 3.69 -988.37 -3.64 -26.54 16 9 C 0.13 3.41 8.47 83.27 0.71 4.12 16 10 C 0.07 2.16 2.25 45.47 0.10 2.26 16 11 N -0.47 -11.01 4.82 -844.66 -4.07 -15.08 16 12 C 0.06 1.45 5.62 86.30 0.49 1.93 16 13 C 0.01 0.38 5.84 71.98 0.42 0.80 16 14 O -0.39 -16.85 6.88 -148.98 -1.02 -17.87 16 15 C 0.18 9.11 4.76 71.23 0.34 9.45 16 16 C -0.54 -33.12 9.99 25.60 0.26 -32.87 16 17 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 18 C 0.01 0.68 5.47 84.65 0.46 1.14 16 19 N -0.94 -61.34 13.96 21.44 0.30 -61.04 16 20 Si 0.96 44.20 27.37 68.60 1.88 46.08 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.24 -10.34 6.70 99.48 0.67 -9.67 16 24 C -0.02 -0.42 3.83 44.92 0.17 -0.24 16 25 C -0.15 -2.33 10.46 30.62 0.32 -2.01 16 26 C -0.15 -2.24 9.91 30.62 0.30 -1.94 16 27 C 0.14 4.84 6.81 83.18 0.57 5.41 16 28 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.95 5.88 -2.39 -0.01 1.94 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.78 5.88 -2.39 -0.01 1.76 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 2.74 6.59 -2.39 -0.02 2.72 16 40 H 0.08 1.95 6.88 -2.39 -0.02 1.94 16 41 H 0.12 2.00 7.54 -2.39 -0.02 1.98 16 42 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 43 H 0.05 1.43 6.58 -2.39 -0.02 1.41 16 44 H 0.01 0.36 7.55 -2.39 -0.02 0.34 16 45 H 0.01 0.24 7.28 -2.39 -0.02 0.23 16 46 H 0.27 16.21 8.31 -92.71 -0.77 15.43 16 47 H 0.07 1.78 7.57 -2.39 -0.02 1.76 16 48 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 50 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 51 H 0.11 1.39 7.86 -2.39 -0.02 1.37 16 52 H 0.05 2.10 7.85 -2.39 -0.02 2.08 16 53 H 0.11 3.11 7.91 -2.39 -0.02 3.09 16 Total: -1.00 -80.28 416.16 1.00 -79.28 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.83 Total: 27.06 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 7.04 Total: 8.63 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -7.42 Total: -102.66 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -1.32 Total: -58.39 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Total: -80.28 1.00 -79.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930868599.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.781 kcal (2) G-P(sol) polarization free energy of solvation -80.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds