Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47158 * 2 1 4 4 C 1.52998 * 109.47054 * 239.99932 * 2 1 3 5 5 O 1.45196 * 109.46860 * 120.00283 * 2 1 3 6 6 C 1.34637 * 117.00697 * 60.00187 * 5 2 1 7 7 O 1.21515 * 119.99448 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00418 * 180.02562 * 6 5 2 9 9 C 1.47613 * 125.80273 * 6.61741 * 8 6 5 10 10 C 1.54965 * 104.86659 * 155.98303 * 9 8 6 11 11 C 1.55305 * 101.66007 * 36.68247 * 10 9 8 12 12 H 1.08996 * 110.75850 * 83.51633 * 11 10 9 13 13 N 1.46905 * 110.75403 * 206.70626 * 11 10 9 14 14 C 1.46899 * 111.00140 * 283.17075 * 13 11 10 15 15 C 1.52997 * 109.46980 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47518 * 60.00188 * 15 14 13 17 17 O 1.42908 * 109.47240 * 300.00167 * 15 14 13 18 18 C 1.50704 * 109.47126 * 180.02562 * 15 14 13 19 19 H 1.08001 * 119.99797 * 359.97438 * 18 15 14 20 20 C 1.37874 * 120.00253 * 179.97438 * 18 15 14 21 21 N 1.31524 * 120.00024 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 120.00230 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47230 * 90.00087 * 22 20 18 24 24 H 1.48497 * 109.47024 * 210.00060 * 22 20 18 25 25 H 1.48505 * 109.46805 * 330.00026 * 22 20 18 26 26 C 1.46384 * 125.79819 * 186.64258 * 8 6 5 27 27 C 1.53142 * 115.36176 * 311.10821 * 26 8 6 28 28 C 1.53895 * 86.89516 * 92.04907 * 27 26 8 29 29 C 1.53136 * 115.37838 * 51.27233 * 26 8 6 30 30 H 1.08994 * 109.47115 * 299.99777 * 1 2 3 31 31 H 1.09001 * 109.46914 * 59.99919 * 1 2 3 32 32 H 1.09004 * 109.47055 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46845 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47093 * 299.99683 * 3 2 1 35 35 H 1.09001 * 109.46615 * 59.99916 * 3 2 1 36 36 H 1.09004 * 109.47372 * 300.00030 * 4 2 1 37 37 H 1.09001 * 109.47138 * 60.00286 * 4 2 1 38 38 H 1.09002 * 109.47231 * 180.02562 * 4 2 1 39 39 H 1.09002 * 110.35935 * 37.13555 * 9 8 6 40 40 H 1.09005 * 110.36275 * 274.83584 * 9 8 6 41 41 H 1.08997 * 110.98496 * 278.59218 * 10 9 8 42 42 H 1.08999 * 110.98930 * 154.77360 * 10 9 8 43 43 H 1.00896 * 110.99456 * 159.21724 * 13 11 10 44 44 H 1.09005 * 109.46999 * 60.00458 * 14 13 11 45 45 H 1.08992 * 109.47048 * 300.00363 * 14 13 11 46 46 H 0.96703 * 113.99303 * 299.99936 * 17 15 14 47 47 H 0.96993 * 120.00285 * 180.02562 * 21 20 18 48 48 H 1.09006 * 113.64234 * 206.55196 * 27 26 8 49 49 H 1.08995 * 113.64808 * 337.54807 * 27 26 8 50 50 H 1.08996 * 113.59430 * 270.37977 * 28 27 26 51 51 H 1.08995 * 113.67187 * 139.54148 * 28 27 26 52 52 H 1.09001 * 113.64747 * 22.46204 * 29 26 8 53 53 H 1.09002 * 113.64396 * 153.46541 * 29 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0672 -2.6655 2.4171 9 6 2.8007 -2.1093 3.5711 10 6 2.4983 -3.0808 4.7400 11 6 2.4747 -4.4517 4.0107 12 1 3.4843 -4.8466 3.8977 13 7 1.6209 -5.4082 4.7278 14 6 2.3031 -5.9334 5.9180 15 6 1.3849 -6.9243 6.6364 16 1 1.1416 -7.7472 5.9644 17 8 0.1827 -6.2599 7.0307 18 6 2.0845 -7.4627 7.8578 19 1 3.0842 -7.1316 8.0974 20 6 1.4484 -8.3779 8.6693 21 7 0.2308 -8.7808 8.3779 22 14 2.3159 -9.0459 10.1829 23 1 2.0164 -8.1766 11.3491 24 1 1.8393 -10.4251 10.4583 25 1 3.7815 -9.0669 9.9445 26 6 1.8675 -4.0979 2.6434 27 6 0.4383 -4.6034 2.4257 28 6 0.8552 -4.9048 0.9753 29 6 2.3008 -5.0108 1.4928 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 2.4366 -1.1090 3.8055 40 1 3.8707 -2.0856 3.3647 41 1 1.5301 -2.8610 5.1897 42 1 3.2906 -3.0501 5.4880 43 1 1.3271 -6.1574 4.1192 44 1 2.5467 -5.1105 6.5900 45 1 3.2198 -6.4405 5.6172 46 1 0.3238 -5.5149 7.6309 47 1 -0.2169 -9.4244 8.9490 48 1 0.1968 -5.4944 3.0054 49 1 -0.3187 -3.8238 2.5099 50 1 0.6962 -4.0697 0.2931 51 1 0.4588 -5.8452 0.5925 52 1 3.0370 -4.5578 0.8288 53 1 2.5782 -6.0153 1.8124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931184642.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -99.573113 kcal Electronic energy + Delta-G solvation = -31898.452851 eV Core-core repulsion = 27771.172778 eV Total energy + Delta-G solvation = -4127.280073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48903 -40.85064 -38.29277 -37.52823 -36.77922 -35.53036 -34.73489 -34.16722 -31.68453 -29.77095 -28.32488 -28.26658 -27.84664 -26.78070 -25.70968 -24.69395 -23.43487 -22.38315 -21.91127 -20.76308 -19.47120 -18.90278 -18.46300 -17.64839 -17.49131 -17.20620 -16.69718 -16.62950 -16.20426 -16.01075 -15.74441 -15.45086 -15.30310 -15.00304 -14.63814 -14.50381 -14.28145 -14.08423 -13.84896 -13.46883 -13.25064 -13.20356 -13.08862 -13.00046 -12.89238 -12.82558 -12.80102 -12.67794 -12.59301 -12.42559 -12.36575 -12.25879 -12.03599 -11.89867 -11.67490 -11.39817 -11.33083 -11.00126 -10.93821 -10.68951 -10.33879 -10.02820 -9.76032 -9.24089 -8.10413 -6.35862 1.01126 1.42463 1.42908 1.53351 1.71389 2.40514 2.80303 3.15066 3.19616 3.47452 3.52665 3.73891 3.76001 3.79301 3.83850 3.98162 4.04259 4.20152 4.24904 4.34562 4.42017 4.49353 4.53193 4.56673 4.65258 4.66553 4.71043 4.74443 4.76215 4.79915 4.87499 4.88400 4.91333 4.99467 5.00456 5.10160 5.13767 5.16697 5.24006 5.25805 5.30339 5.32504 5.37895 5.51665 5.64444 5.80067 5.89856 6.05161 6.22445 6.44106 6.52808 6.78234 7.38565 7.38707 7.67126 8.93881 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002353 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.803287 B =11896.394490 C =12237.466998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.178 4.178 5 O -0.365 6.365 6 C 0.664 3.336 7 O -0.565 6.565 8 N -0.584 5.584 9 C 0.109 3.891 10 C -0.117 4.117 11 C 0.089 3.911 12 H 0.062 0.938 13 N -0.668 5.668 14 C 0.057 3.943 15 C 0.233 3.767 16 H 0.016 0.984 17 O -0.570 6.570 18 C -0.583 4.583 19 H 0.061 0.939 20 C 0.024 3.976 21 N -0.900 5.900 22 Si 0.958 3.042 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.264 1.264 26 C 0.167 3.833 27 C -0.126 4.126 28 C -0.175 4.175 29 C -0.137 4.137 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.337 0.663 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.353 0.647 47 H 0.260 0.740 48 H 0.090 0.910 49 H 0.048 0.952 50 H 0.139 0.861 51 H 0.054 0.946 52 H 0.064 0.936 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 20.179 -17.423 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.235 4.235 5 O -0.280 6.280 6 C 0.421 3.579 7 O -0.457 6.457 8 N -0.323 5.323 9 C -0.013 4.013 10 C -0.156 4.156 11 C -0.022 4.022 12 H 0.080 0.920 13 N -0.301 5.301 14 C -0.072 4.072 15 C 0.175 3.825 16 H 0.033 0.967 17 O -0.373 6.373 18 C -0.622 4.622 19 H 0.079 0.921 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.783 3.217 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.188 1.188 26 C 0.082 3.918 27 C -0.165 4.165 28 C -0.211 4.211 29 C -0.176 4.176 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.157 0.843 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.197 0.803 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.067 0.933 50 H 0.155 0.845 51 H 0.073 0.927 52 H 0.083 0.917 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.005 20.072 -17.801 27.492 hybrid contribution 0.923 -1.146 0.859 1.704 sum 6.929 18.926 -16.942 26.329 Atomic orbital electron populations 1.22468 0.94108 1.03724 1.03359 1.22414 0.94473 0.92675 0.81504 1.21874 1.02398 0.90675 1.04239 1.22463 1.01495 1.02338 0.97214 1.86327 1.71299 1.22877 1.47523 1.17684 0.78479 0.80630 0.81073 1.90462 1.41823 1.68543 1.44844 1.46755 1.58568 1.08208 1.18726 1.22513 0.97059 0.98129 0.83555 1.22855 1.03496 0.92366 0.96852 1.22285 0.94606 0.94221 0.91066 0.91995 1.60647 1.40717 1.20011 1.08723 1.22491 0.95155 0.97710 0.91849 1.19185 0.82309 0.88875 0.92126 0.96652 1.86513 1.34504 1.48611 1.67715 1.22040 1.02166 1.26518 1.11434 0.92056 1.25901 0.95188 0.95919 1.00826 1.70228 1.13494 1.31174 1.38849 0.85578 0.79066 0.77429 0.79587 1.19875 1.21238 1.18822 1.21383 0.97374 0.78916 0.94165 1.22953 0.95219 1.00962 0.97383 1.24045 0.94856 1.03947 0.98214 1.23185 0.98092 0.99340 0.96943 0.92402 0.89104 0.91862 0.91203 0.87954 0.91402 0.91733 0.89149 0.92121 0.89132 0.89496 0.90758 0.88396 0.84316 0.91038 0.95619 0.80316 0.93140 0.89162 0.93330 0.84468 0.92744 0.91692 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.37 71.98 0.60 -2.55 16 2 C 0.13 2.14 1.13 -10.79 -0.01 2.13 16 3 C -0.13 -1.46 8.85 71.98 0.64 -0.83 16 4 C -0.18 -2.93 8.37 71.98 0.60 -2.32 16 5 O -0.37 -8.15 9.50 -55.46 -0.53 -8.67 16 6 C 0.66 17.18 7.64 129.79 0.99 18.17 16 7 O -0.57 -16.00 7.46 19.79 0.15 -15.86 16 8 N -0.58 -14.44 3.17 -896.68 -2.84 -17.28 16 9 C 0.11 2.17 6.93 86.84 0.60 2.77 16 10 C -0.12 -2.66 6.23 32.06 0.20 -2.46 16 11 C 0.09 2.34 2.81 45.95 0.13 2.47 16 12 H 0.06 1.56 8.02 -2.39 -0.02 1.55 16 13 N -0.67 -21.96 5.36 -486.22 -2.60 -24.56 16 14 C 0.06 2.15 5.14 86.30 0.44 2.60 16 15 C 0.23 11.55 3.03 29.85 0.09 11.64 16 16 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 17 O -0.57 -29.45 12.59 -148.98 -1.88 -31.32 16 18 C -0.58 -31.15 8.76 25.60 0.22 -30.92 16 19 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 20 C 0.02 1.32 5.40 84.65 0.46 1.78 16 21 N -0.90 -53.73 12.84 21.45 0.28 -53.45 16 22 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.17 4.39 1.40 3.96 0.01 4.40 16 27 C -0.13 -3.76 6.66 30.94 0.21 -3.55 16 28 C -0.17 -4.83 7.44 31.20 0.23 -4.59 16 29 C -0.14 -3.47 7.29 30.94 0.23 -3.24 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.48 5.88 -2.39 -0.01 1.46 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.62 8.13 -2.39 -0.02 1.60 16 40 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.34 11.47 6.80 -89.70 -0.61 10.86 16 44 H 0.07 2.58 7.76 -2.38 -0.02 2.56 16 45 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 46 H 0.35 16.30 9.04 -74.05 -0.67 15.63 16 47 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.09 2.87 5.83 -2.38 -0.01 2.85 16 49 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.14 4.15 4.12 -77.59 -0.32 3.83 16 51 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.09 2.19 8.13 -2.39 -0.02 2.18 16 Total: -1.00 -65.31 404.97 -0.44 -65.75 By element: Atomic # 1 Polarization: 45.77 SS G_CDS: -0.68 Total: 45.09 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.64 Total: -4.51 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -5.17 Total: -95.29 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -2.26 Total: -55.85 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -65.31 -0.44 -65.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931184642.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.826 kcal (2) G-P(sol) polarization free energy of solvation -65.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds