Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 C 1.52999 * 109.47174 * 240.00195 * 2 1 3 5 5 O 1.45198 * 109.47361 * 120.00108 * 2 1 3 6 6 C 1.34635 * 117.00018 * 59.99734 * 5 2 1 7 7 O 1.21504 * 119.99893 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99851 * 180.27559 * 6 5 2 9 9 C 1.46493 * 119.99981 * 179.72508 * 8 6 5 10 10 H 1.09003 * 109.47167 * 35.00785 * 9 8 6 11 11 C 1.50700 * 109.47029 * 155.00025 * 9 8 6 12 12 O 1.21290 * 120.00375 * 21.99815 * 11 9 8 13 13 N 1.34778 * 120.00025 * 201.99620 * 11 9 8 14 14 C 1.37106 * 120.00172 * 185.02698 * 13 11 9 15 15 H 1.07997 * 119.99541 * 0.02562 * 14 13 11 16 16 C 1.38944 * 119.99946 * 180.02562 * 14 13 11 17 17 N 1.31409 * 120.00212 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99679 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47259 * 90.00062 * 18 16 14 20 20 H 1.48499 * 109.47045 * 209.99558 * 18 16 14 21 21 H 1.48493 * 109.47004 * 329.99788 * 18 16 14 22 22 C 1.53000 * 109.47496 * 275.00260 * 9 8 6 23 23 C 1.54239 * 108.89567 * 68.74420 * 22 9 8 24 24 C 1.50465 * 108.52827 * 159.26449 * 23 22 9 25 25 C 1.54074 * 112.49889 * 94.14714 * 24 23 22 26 26 C 1.54065 * 112.81553 * 318.28707 * 25 24 23 27 27 C 1.50469 * 112.49618 * 318.28149 * 26 25 24 28 28 C 1.45534 * 108.89290 * 305.85838 * 22 9 8 29 29 H 1.09001 * 109.47003 * 299.99696 * 1 2 3 30 30 H 1.08997 * 109.47500 * 60.00070 * 1 2 3 31 31 H 1.08996 * 109.46714 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47374 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47342 * 300.00254 * 3 2 1 34 34 H 1.09002 * 109.47538 * 60.00065 * 3 2 1 35 35 H 1.08998 * 109.46781 * 299.99919 * 4 2 1 36 36 H 1.09005 * 109.46938 * 59.99767 * 4 2 1 37 37 H 1.08999 * 109.46861 * 179.97438 * 4 2 1 38 38 H 0.97006 * 119.99856 * 359.73024 * 8 6 5 39 39 H 0.97000 * 120.00491 * 5.02849 * 13 11 9 40 40 H 0.97009 * 120.00074 * 180.02562 * 17 16 14 41 41 H 1.08994 * 108.87289 * 187.25633 * 22 9 8 42 42 H 1.09004 * 109.62675 * 278.98042 * 23 22 9 43 43 H 1.09006 * 109.63093 * 39.55192 * 23 22 9 44 44 H 1.09007 * 108.87791 * 333.37311 * 24 23 22 45 45 H 1.09000 * 108.88272 * 214.92934 * 24 23 22 46 46 H 1.08998 * 108.81251 * 197.42343 * 25 24 23 47 47 H 1.08996 * 108.72132 * 79.08859 * 25 24 23 48 48 H 1.08995 * 108.87472 * 197.50535 * 26 25 24 49 49 H 1.09002 * 108.79552 * 79.00555 * 26 25 24 50 50 H 1.09001 * 109.63191 * 334.44549 * 27 26 25 51 51 H 1.08998 * 109.63154 * 213.86381 * 27 26 25 52 52 H 1.09000 * 108.89977 * 303.44249 * 28 22 9 53 53 H 1.09010 * 108.89789 * 61.93486 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5096 0.5036 8 7 2.0632 -2.6639 2.4197 9 6 1.6646 -4.0634 2.5890 10 1 1.6186 -4.5486 1.6140 11 6 2.6738 -4.7718 3.4554 12 8 3.3851 -4.1344 4.2030 13 7 2.7860 -6.1137 3.3995 14 6 3.6297 -6.7675 4.2600 15 1 4.2041 -6.2072 4.9828 16 6 3.7458 -8.1509 4.2021 17 7 3.0465 -8.8327 3.3229 18 14 4.8948 -9.0417 5.3750 19 1 4.1566 -9.4040 6.6115 20 1 5.4070 -10.2748 4.7251 21 1 6.0343 -8.1545 5.7207 22 6 0.2884 -4.1248 3.2547 23 6 -0.7694 -3.5955 2.2648 24 6 -2.1186 -4.1123 2.6851 25 6 -2.8773 -3.1172 3.5840 26 6 -1.9693 -2.4479 4.6334 27 6 -1.0057 -3.4170 5.2629 28 6 0.3272 -3.3550 4.4891 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 3.1299 1.4427 0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2492 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 2.6228 -2.2349 3.0859 39 1 2.2699 -6.6171 2.7506 40 1 3.1273 -9.7986 3.2827 41 1 0.0582 -5.1631 3.4933 42 1 -0.7734 -2.5056 2.2813 43 1 -0.5392 -3.9484 1.2594 44 1 -1.9843 -5.0473 3.2292 45 1 -2.7148 -4.3078 1.7938 46 1 -3.6776 -3.6484 4.0990 47 1 -3.3176 -2.3433 2.9552 48 1 -2.5936 -2.0139 5.4143 49 1 -1.4035 -1.6508 4.1511 50 1 -1.4137 -4.4263 5.2090 51 1 -0.8377 -3.1421 6.3042 52 1 1.1224 -3.7457 5.1240 53 1 0.5482 -2.3147 4.2497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298524.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -161.365753 kcal Electronic energy + Delta-G solvation = -32675.229163 eV Core-core repulsion = 28545.269561 eV Total energy + Delta-G solvation = -4129.959603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16579 -40.90869 -39.35410 -38.09980 -36.26701 -35.65645 -34.97250 -33.42675 -33.02028 -32.83799 -29.04351 -28.29051 -28.23800 -26.67196 -25.65769 -24.69742 -23.33807 -21.75670 -20.97314 -20.62993 -20.18064 -19.95048 -19.23187 -17.69442 -17.50131 -17.31431 -16.89286 -16.62311 -16.18019 -15.83492 -15.56803 -15.48258 -15.38723 -15.15877 -15.11930 -14.62455 -14.38893 -13.95726 -13.84731 -13.54293 -13.37640 -13.28344 -13.08594 -13.07371 -12.95966 -12.89393 -12.82651 -12.74526 -12.44940 -12.42900 -12.23757 -12.13404 -11.83054 -11.67587 -11.56889 -11.47411 -11.35583 -11.31883 -11.17372 -11.09673 -10.87624 -10.49834 -10.07707 -9.98250 -8.49570 -5.99308 1.13027 1.36566 1.42573 1.54946 1.80841 1.94657 2.28146 2.99311 3.14217 3.24136 3.61937 3.76408 3.82303 3.86656 3.94136 4.01325 4.13859 4.19387 4.21874 4.34699 4.37987 4.43307 4.51618 4.53877 4.62462 4.68222 4.78819 4.82369 4.85847 4.90088 4.93879 4.93968 5.04151 5.06934 5.14112 5.16981 5.23133 5.33312 5.34758 5.36297 5.37118 5.39095 5.39744 5.43180 5.50763 5.56214 5.59828 5.67811 5.93326 6.44360 6.51541 7.05433 7.38150 7.46835 7.96257 8.67177 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010755 B = 0.003779 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.793651 B = 7407.251082 C = 8981.518908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.653 3.347 7 O -0.574 6.574 8 N -0.686 5.686 9 C 0.169 3.831 10 H 0.095 0.905 11 C 0.440 3.560 12 O -0.618 6.618 13 N -0.557 5.557 14 C -0.334 4.334 15 H 0.085 0.915 16 C -0.008 4.008 17 N -0.915 5.915 18 Si 0.993 3.007 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.078 4.078 23 C -0.086 4.086 24 C -0.120 4.120 25 C -0.111 4.111 26 C -0.112 4.112 27 C -0.110 4.110 28 C -0.107 4.107 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.410 0.590 39 H 0.396 0.604 40 H 0.279 0.721 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.051 0.949 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.037 0.963 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.656 15.870 -5.660 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.288 6.288 6 C 0.407 3.593 7 O -0.465 6.465 8 N -0.346 5.346 9 C 0.061 3.939 10 H 0.113 0.887 11 C 0.226 3.774 12 O -0.505 6.505 13 N -0.193 5.193 14 C -0.463 4.463 15 H 0.103 0.897 16 C -0.209 4.209 17 N -0.555 5.555 18 Si 0.816 3.184 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.148 4.148 28 C -0.145 4.145 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.247 0.753 39 H 0.230 0.770 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.081 0.919 51 H 0.083 0.917 52 H 0.055 0.945 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.547 15.877 -5.671 19.887 hybrid contribution 0.916 -0.947 0.455 1.394 sum -9.630 14.930 -5.216 18.517 Atomic orbital electron populations 1.22454 0.93467 1.04057 1.03422 1.22436 0.94988 0.92509 0.81314 1.21886 1.02192 0.90846 1.04339 1.22481 1.01274 1.02477 0.97514 1.86325 1.71807 1.22970 1.47649 1.17918 0.78742 0.80885 0.81754 1.90858 1.41463 1.70495 1.43641 1.44363 1.55113 1.11439 1.23674 1.20671 0.93489 0.80433 0.99291 0.88687 1.20339 0.87077 0.82969 0.86970 1.90489 1.48863 1.66087 1.45097 1.41839 1.39137 1.05236 1.33039 1.19697 1.21504 0.90406 1.14705 0.89744 1.26055 0.99101 0.96699 0.99011 1.69680 1.41332 1.08842 1.35663 0.84930 0.78052 0.77517 0.77887 1.19439 1.19692 1.19637 1.20437 0.92288 1.00848 0.96201 1.21275 0.93327 1.00211 0.97558 1.21366 0.95808 0.99026 0.99537 1.21878 0.97768 0.98377 0.96799 1.21286 0.97564 0.97914 0.98186 1.21264 0.94346 1.00429 0.98737 1.20413 0.98119 1.00215 0.95737 0.92115 0.89050 0.91410 0.91700 0.87670 0.91269 0.91759 0.88837 0.92664 0.75287 0.77008 0.91127 0.91107 0.92526 0.91514 0.92660 0.91585 0.91469 0.91800 0.91132 0.93035 0.91888 0.91707 0.94459 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.56 8.37 71.98 0.60 -2.95 16 2 C 0.12 2.70 1.13 -10.79 -0.01 2.68 16 3 C -0.14 -2.08 8.85 71.98 0.64 -1.44 16 4 C -0.18 -3.94 8.37 71.98 0.60 -3.34 16 5 O -0.37 -10.68 9.94 -55.44 -0.55 -11.23 16 6 C 0.65 21.09 7.09 129.79 0.92 22.01 16 7 O -0.57 -19.15 8.65 19.83 0.17 -18.98 16 8 N -0.69 -23.71 3.90 -573.74 -2.24 -25.95 16 9 C 0.17 6.31 2.29 44.25 0.10 6.41 16 10 H 0.10 3.60 7.36 -2.39 -0.02 3.58 16 11 C 0.44 20.54 6.05 87.66 0.53 21.07 16 12 O -0.62 -32.33 14.99 -3.06 -0.05 -32.37 16 13 N -0.56 -28.24 5.28 -306.98 -1.62 -29.87 16 14 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 15 H 0.08 4.94 7.17 -2.91 -0.02 4.92 16 16 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 17 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 18 Si 0.99 42.08 29.55 68.60 2.03 44.11 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 C -0.08 -2.53 1.53 -12.65 -0.02 -2.55 16 23 C -0.09 -2.44 3.35 30.19 0.10 -2.34 16 24 C -0.12 -2.87 5.31 30.14 0.16 -2.71 16 25 C -0.11 -2.26 5.85 31.32 0.18 -2.08 16 26 C -0.11 -2.45 5.32 30.14 0.16 -2.29 16 27 C -0.11 -2.88 5.61 30.20 0.17 -2.72 16 28 C -0.11 -3.43 4.21 28.74 0.12 -3.31 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.72 5.88 -2.39 -0.01 1.70 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.77 5.88 -2.39 -0.01 1.76 16 36 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.41 14.66 7.86 -92.70 -0.73 13.94 16 39 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 40 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 41 H 0.07 2.47 7.44 -2.39 -0.02 2.45 16 42 H 0.06 1.64 6.16 -2.38 -0.01 1.63 16 43 H 0.07 2.08 6.46 -2.38 -0.02 2.07 16 44 H 0.05 1.40 6.63 -2.38 -0.02 1.38 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 1.20 6.63 -2.39 -0.02 1.19 16 50 H 0.06 1.68 6.98 -2.39 -0.02 1.66 16 51 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.04 1.44 6.65 -2.39 -0.02 1.43 16 53 H 0.06 1.87 6.64 -2.38 -0.02 1.85 16 Total: -1.00 -61.98 396.86 3.02 -58.95 By element: Atomic # 1 Polarization: 55.48 SS G_CDS: -0.54 Total: 54.94 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.54 Total: 8.83 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.58 Total: -104.25 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -0.43 Total: -62.59 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -61.98 3.02 -58.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298524.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.412 kcal (2) G-P(sol) polarization free energy of solvation -61.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds