Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47315 * 2 1 4 4 C 1.52999 * 109.47165 * 239.99747 * 2 1 3 5 5 O 1.45199 * 109.46890 * 119.99967 * 2 1 3 6 6 C 1.34634 * 117.00238 * 60.00084 * 5 2 1 7 7 O 1.21513 * 119.99891 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00277 * 179.97438 * 6 5 2 9 9 C 1.46495 * 120.00076 * 185.07839 * 8 6 5 10 10 H 1.09000 * 109.47394 * 36.51652 * 9 8 6 11 11 C 1.50697 * 109.47503 * 276.51618 * 9 8 6 12 12 O 1.21297 * 119.99861 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00106 * 180.02562 * 11 9 8 14 14 C 1.37100 * 119.99796 * 180.02562 * 13 11 9 15 15 H 1.08005 * 120.00229 * 359.97438 * 14 13 11 16 16 C 1.38943 * 119.99876 * 179.97438 * 14 13 11 17 17 N 1.31418 * 120.00346 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00178 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47348 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47441 * 120.00165 * 18 16 14 21 21 H 1.48502 * 109.47342 * 240.00016 * 18 16 14 22 22 C 1.52999 * 109.46923 * 156.51353 * 9 8 6 23 23 C 1.54063 * 108.79722 * 63.04006 * 22 9 8 24 24 C 1.54266 * 112.94743 * 197.44973 * 23 22 9 25 25 C 1.50478 * 112.38487 * 318.57049 * 24 23 22 26 26 C 1.54236 * 108.67934 * 93.93830 * 25 24 23 27 27 C 1.45538 * 112.40926 * 279.91334 * 26 25 24 28 28 C 1.50469 * 108.87891 * 300.10865 * 22 9 8 29 29 H 1.08993 * 109.47152 * 300.00499 * 1 2 3 30 30 H 1.09000 * 109.46812 * 60.00195 * 1 2 3 31 31 H 1.08993 * 109.47404 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47276 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47209 * 300.00187 * 3 2 1 34 34 H 1.09006 * 109.47144 * 59.99731 * 3 2 1 35 35 H 1.08993 * 109.47405 * 300.00545 * 4 2 1 36 36 H 1.09002 * 109.46698 * 60.00218 * 4 2 1 37 37 H 1.09002 * 109.46815 * 179.97438 * 4 2 1 38 38 H 0.97002 * 119.99538 * 5.08671 * 8 6 5 39 39 H 0.96998 * 120.00039 * 359.97438 * 13 11 9 40 40 H 0.96993 * 120.00386 * 180.02562 * 17 16 14 41 41 H 1.09005 * 108.85138 * 181.55086 * 22 9 8 42 42 H 1.08999 * 108.81304 * 318.41351 * 23 22 9 43 43 H 1.09000 * 108.81906 * 76.70074 * 23 22 9 44 44 H 1.08998 * 109.18168 * 197.66146 * 24 23 22 45 45 H 1.08996 * 108.68604 * 79.15028 * 24 23 22 46 46 H 1.08993 * 109.63010 * 334.12706 * 25 24 23 47 47 H 1.09002 * 109.62725 * 213.74379 * 25 24 23 48 48 H 1.08999 * 108.89509 * 40.66894 * 26 25 24 49 49 H 1.09002 * 108.89716 * 159.25198 * 26 25 24 50 50 H 1.08998 * 108.89741 * 182.69455 * 27 26 25 51 51 H 1.09006 * 108.89566 * 301.27769 * 27 26 25 52 52 H 1.08997 * 109.62705 * 95.12025 * 28 22 9 53 53 H 1.08997 * 109.63151 * 334.53628 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.7684 -4.0953 2.5284 10 1 1.8261 -4.5568 1.5425 11 6 0.3805 -4.2757 3.0870 12 8 -0.2922 -3.3054 3.3650 13 7 -0.1130 -5.5152 3.2786 14 6 -1.3759 -5.6793 3.7864 15 1 -1.9752 -4.8153 4.0331 16 6 -1.8848 -6.9570 3.9835 17 7 -1.1555 -8.0083 3.6837 18 14 -3.6053 -7.1806 4.6759 19 1 -4.2138 -5.8499 4.9291 20 1 -4.4386 -7.9277 3.6998 21 1 -3.5316 -7.9420 5.9487 22 6 2.7839 -4.7577 3.4616 23 6 2.6367 -4.1477 4.8686 24 6 3.8600 -4.4130 5.7702 25 6 4.3846 -5.8160 5.6262 26 6 5.5134 -5.8158 4.5752 27 6 5.0027 -5.8220 3.2124 28 6 4.1640 -4.5676 2.8931 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.5654 -2.2180 3.1189 39 1 0.4251 -6.2911 3.0567 40 1 -1.5109 -8.9003 3.8209 41 1 2.5687 -5.8250 3.5157 42 1 2.4977 -3.0709 4.7721 43 1 1.7534 -4.5727 5.3455 44 1 3.5811 -4.2459 6.8106 45 1 4.6501 -3.7117 5.5020 46 1 3.5807 -6.4758 5.3000 47 1 4.7756 -6.1608 6.5835 48 1 6.1282 -4.9271 4.7177 49 1 6.1331 -6.7004 4.7225 50 1 5.8435 -5.8701 2.5205 51 1 4.3803 -6.7060 3.0727 52 1 4.6288 -3.6916 3.3454 53 1 4.1001 -4.4351 1.8131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298525.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -163.800823 kcal Electronic energy + Delta-G solvation = -32421.539760 eV Core-core repulsion = 28291.474564 eV Total energy + Delta-G solvation = -4130.065195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03108 -40.90224 -39.32074 -38.15970 -36.25696 -35.81872 -35.00645 -33.44274 -33.14983 -32.64722 -28.95716 -28.35775 -28.26001 -26.64857 -25.80689 -24.42998 -23.51149 -21.41127 -21.25852 -21.03310 -19.96885 -19.83178 -19.33457 -17.98581 -17.61267 -16.99047 -16.67924 -16.62043 -16.27186 -15.91587 -15.64831 -15.33407 -15.28834 -15.17005 -14.99221 -14.66288 -14.44155 -14.30994 -13.83902 -13.55620 -13.38977 -13.27195 -13.14272 -12.97391 -12.95151 -12.90766 -12.83048 -12.79969 -12.50754 -12.43239 -12.28255 -12.15708 -11.81876 -11.56891 -11.53404 -11.44996 -11.36485 -11.23487 -11.17094 -11.08112 -11.03416 -10.85691 -10.02205 -9.88377 -8.47678 -5.96235 1.13780 1.33252 1.38609 1.52454 1.83345 2.00849 2.28449 3.07604 3.16046 3.26164 3.56277 3.67775 3.78342 3.81987 3.82358 3.97013 4.12442 4.19892 4.28863 4.33499 4.39933 4.44013 4.52587 4.56540 4.61743 4.63002 4.72507 4.77033 4.78508 4.85017 4.90144 4.93014 5.06521 5.07719 5.16627 5.18694 5.25673 5.30903 5.31569 5.34887 5.39421 5.39575 5.40613 5.42896 5.50900 5.58614 5.61057 5.66003 5.97063 6.43062 6.56465 7.10423 7.39818 7.52744 8.07397 8.69499 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007749 B = 0.004583 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.675518 B = 6108.044790 C = 8885.502465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.131 4.131 4 C -0.177 4.177 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.594 6.594 8 N -0.671 5.671 9 C 0.170 3.830 10 H 0.097 0.903 11 C 0.434 3.566 12 O -0.626 6.626 13 N -0.564 5.564 14 C -0.331 4.331 15 H 0.073 0.927 16 C -0.008 4.008 17 N -0.915 5.915 18 Si 0.989 3.011 19 H -0.277 1.277 20 H -0.271 1.271 21 H -0.267 1.267 22 C -0.072 4.072 23 C -0.110 4.110 24 C -0.106 4.106 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.103 4.103 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.414 0.586 39 H 0.395 0.605 40 H 0.278 0.722 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.030 0.970 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.052 0.948 52 H 0.083 0.917 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.007 10.057 -3.176 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.087 3.913 3 C -0.188 4.188 4 C -0.234 4.234 5 O -0.281 6.281 6 C 0.405 3.595 7 O -0.484 6.484 8 N -0.331 5.331 9 C 0.061 3.939 10 H 0.115 0.885 11 C 0.220 3.780 12 O -0.513 6.513 13 N -0.200 5.200 14 C -0.461 4.461 15 H 0.091 0.909 16 C -0.208 4.208 17 N -0.556 5.556 18 Si 0.812 3.188 19 H -0.202 1.202 20 H -0.196 1.196 21 H -0.192 1.192 22 C -0.091 4.091 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.160 4.160 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.252 0.748 39 H 0.229 0.771 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.094 0.906 51 H 0.070 0.930 52 H 0.102 0.898 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.194 10.305 -3.446 19.501 hybrid contribution -1.310 -0.689 0.507 1.564 sum 14.884 9.616 -2.939 17.962 Atomic orbital electron populations 1.22470 0.95250 1.02972 1.03177 1.22444 0.93774 0.93244 0.81810 1.21866 1.02739 0.89959 1.04241 1.22454 1.01983 1.01938 0.97048 1.86273 1.71420 1.22674 1.47704 1.18166 0.78058 0.80917 0.82399 1.90892 1.41023 1.71110 1.45418 1.44133 1.58826 1.08869 1.21224 1.20833 0.91817 0.80367 1.00839 0.88517 1.21120 0.90205 0.83213 0.83417 1.90486 1.62518 1.40550 1.57755 1.41833 1.15105 1.06491 1.56608 1.19619 0.92507 0.93371 1.40602 0.90867 1.25960 1.03313 0.94141 0.97401 1.69666 1.38882 0.98809 1.48245 0.84942 0.77398 0.78086 0.78332 1.20193 1.19645 1.19154 1.21236 0.94656 0.99835 0.93374 1.21949 0.98637 0.99943 0.94271 1.21297 0.96606 0.97943 0.98473 1.21379 0.98361 0.96598 0.99685 1.20454 0.97461 1.02836 0.94125 1.20480 0.99927 0.97119 0.97868 1.21366 0.92497 0.99698 1.00483 0.92906 0.88612 0.93314 0.90387 0.87710 0.91614 0.92595 0.88912 0.91032 0.74803 0.77109 0.91236 0.89980 0.92509 0.95124 0.92347 0.90039 0.93428 0.91159 0.90853 0.91555 0.90574 0.92956 0.89803 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.31 8.37 71.98 0.60 -4.71 16 2 C 0.12 3.20 1.13 -10.79 -0.01 3.19 16 3 C -0.13 -2.21 8.85 71.98 0.64 -1.57 16 4 C -0.18 -4.24 8.37 71.98 0.60 -3.63 16 5 O -0.37 -11.59 9.94 -55.44 -0.55 -12.14 16 6 C 0.65 24.59 7.80 129.79 1.01 25.61 16 7 O -0.59 -26.30 11.61 19.80 0.23 -26.07 16 8 N -0.67 -23.09 4.03 -573.75 -2.31 -25.40 16 9 C 0.17 6.34 1.82 44.24 0.08 6.42 16 10 H 0.10 3.71 7.64 -2.39 -0.02 3.69 16 11 C 0.43 21.77 5.99 87.66 0.52 22.30 16 12 O -0.63 -36.65 15.85 -3.08 -0.05 -36.70 16 13 N -0.56 -30.04 5.18 -306.98 -1.59 -31.63 16 14 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 15 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 16 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 17 N -0.92 -49.98 13.05 21.66 0.28 -49.69 16 18 Si 0.99 44.17 29.55 68.60 2.03 46.19 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 C -0.07 -2.08 1.44 -11.25 -0.02 -2.10 16 23 C -0.11 -3.27 4.50 31.38 0.14 -3.12 16 24 C -0.11 -2.34 5.34 30.21 0.16 -2.18 16 25 C -0.12 -2.58 5.59 30.20 0.17 -2.41 16 26 C -0.11 -1.88 5.26 28.73 0.15 -1.73 16 27 C -0.12 -2.17 5.26 28.74 0.15 -2.02 16 28 C -0.10 -2.20 4.69 30.20 0.14 -2.06 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.87 5.88 -2.39 -0.01 1.86 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.75 5.88 -2.39 -0.01 1.74 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.41 12.07 7.06 -92.71 -0.65 11.41 16 39 H 0.39 20.07 7.31 -92.71 -0.68 19.39 16 40 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.08 2.60 6.06 -2.38 -0.01 2.59 16 42 H 0.06 1.68 6.27 -2.39 -0.01 1.67 16 43 H 0.03 1.15 7.74 -2.39 -0.02 1.13 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 1.44 6.65 -2.39 -0.02 1.42 16 46 H 0.05 1.23 6.98 -2.39 -0.02 1.22 16 47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.07 1.04 7.48 -2.39 -0.02 1.03 16 49 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.05 1.12 7.47 -2.38 -0.02 1.10 16 52 H 0.08 1.53 6.99 -2.39 -0.02 1.51 16 53 H 0.07 1.44 7.68 -2.39 -0.02 1.43 16 Total: -1.00 -74.60 402.26 3.25 -71.35 By element: Atomic # 1 Polarization: 51.15 SS G_CDS: -0.41 Total: 50.73 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 5.63 Total: 13.36 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.62 Total: -106.73 kcal Atomic # 8 Polarization: -74.54 SS G_CDS: -0.37 Total: -74.91 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -74.60 3.25 -71.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298525.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.449 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds