Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.45194 * 109.46979 * 239.99917 * 2 1 3 6 6 C 1.34637 * 117.00311 * 60.00565 * 5 2 1 7 7 O 1.21515 * 119.99443 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00399 * 179.97438 * 6 5 2 9 9 C 1.46937 * 120.64535 * 359.72006 * 8 6 5 10 10 C 1.53621 * 108.54203 * 126.29833 * 9 8 6 11 11 C 1.53010 * 109.27497 * 54.81890 * 10 9 8 12 12 C 1.52998 * 109.60899 * 298.64403 * 11 10 9 13 13 C 1.46935 * 120.64630 * 179.97438 * 8 6 5 14 14 C 1.53072 * 109.43783 * 178.58560 * 11 10 9 15 15 N 1.47023 * 109.26891 * 183.32820 * 14 11 10 16 16 C 1.46896 * 110.99607 * 182.35260 * 15 14 11 17 17 C 1.50709 * 109.46836 * 170.00020 * 16 15 14 18 18 H 1.07996 * 120.00233 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99734 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99671 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00365 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47038 * 90.00117 * 21 19 17 23 23 H 1.48505 * 109.47161 * 210.00410 * 21 19 17 24 24 H 1.48502 * 109.46952 * 330.00468 * 21 19 17 25 25 C 1.47012 * 110.74321 * 58.58082 * 15 14 11 26 26 C 1.53092 * 109.25235 * 301.34481 * 25 15 14 27 27 O 1.42966 * 109.49269 * 58.76553 * 11 10 9 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 35 35 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 37 37 H 1.08998 * 109.58722 * 246.13644 * 9 8 6 38 38 H 1.09003 * 109.58076 * 6.56058 * 9 8 6 39 39 H 1.08998 * 109.62772 * 294.81668 * 10 9 8 40 40 H 1.09001 * 109.44506 * 174.70885 * 10 9 8 41 41 H 1.09002 * 109.49080 * 301.26898 * 12 11 10 42 42 H 1.08999 * 109.51511 * 181.20483 * 12 11 10 43 43 H 1.08998 * 109.58657 * 353.43329 * 13 8 6 44 44 H 1.08992 * 109.58867 * 113.72649 * 13 8 6 45 45 H 1.08996 * 109.50677 * 303.26310 * 14 11 10 46 46 H 1.09004 * 109.50670 * 63.35205 * 14 11 10 47 47 H 1.08997 * 109.47506 * 289.99590 * 16 15 14 48 48 H 1.09000 * 109.47868 * 50.00313 * 16 15 14 49 49 H 0.96998 * 119.99673 * 180.02562 * 20 19 17 50 50 H 1.09005 * 109.50409 * 61.28101 * 25 15 14 51 51 H 1.08997 * 109.50682 * 181.41110 * 25 15 14 52 52 H 1.08997 * 109.50668 * 176.80971 * 26 25 15 53 53 H 1.08998 * 109.50631 * 296.89376 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0140 -0.6845 -1.1855 6 6 1.6524 -0.1729 -2.3772 7 8 0.9511 0.8183 -2.4252 8 7 2.0681 -0.7600 -3.5168 9 6 2.9215 -1.9554 -3.4754 10 6 2.2623 -3.0558 -4.3206 11 6 1.9986 -2.5206 -5.7296 12 6 1.0408 -1.3298 -5.6556 13 6 1.6814 -0.2139 -4.8250 14 6 1.3739 -3.6253 -6.5855 15 7 1.1958 -3.1326 -7.9592 16 6 0.5463 -4.1456 -8.8017 17 6 0.1589 -3.5285 -10.1209 18 1 0.3733 -2.4878 -10.3140 19 6 -0.4703 -4.2923 -11.0810 20 7 -0.8079 -3.7539 -12.2324 21 14 -0.8418 -6.0923 -10.7469 22 1 -2.1852 -6.2133 -10.1258 23 1 -0.8173 -6.8483 -12.0249 24 1 0.1817 -6.6460 -9.8244 25 6 2.4831 -2.7158 -8.5340 26 6 3.0952 -1.6190 -7.6588 27 8 3.2322 -2.1046 -6.3205 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2493 35 1 3.1300 -0.7217 1.2491 36 1 1.6766 -0.2074 2.1393 37 1 3.9041 -1.7172 -3.8825 38 1 3.0234 -2.2959 -2.4449 39 1 1.3194 -3.3540 -3.8625 40 1 2.9276 -3.9173 -4.3774 41 1 0.1078 -1.6422 -5.1866 42 1 0.8372 -0.9633 -6.6618 43 1 0.9645 0.5952 -4.6857 44 1 2.5650 0.1650 -5.3385 45 1 2.0308 -4.4951 -6.5933 46 1 0.4056 -3.9042 -6.1698 47 1 1.2369 -4.9708 -8.9755 48 1 -0.3462 -4.5185 -8.2991 49 1 -1.2508 -4.2912 -12.9077 50 1 3.1584 -3.5706 -8.5720 51 1 2.3244 -2.3314 -9.5415 52 1 4.0758 -1.3467 -8.0492 53 1 2.4454 -0.7439 -7.6643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932715052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -134.762777 kcal Electronic energy + Delta-G solvation = -31958.340472 eV Core-core repulsion = 27829.534461 eV Total energy + Delta-G solvation = -4128.806011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06216 -41.20374 -38.82897 -37.44539 -36.57596 -35.04510 -34.56687 -33.67440 -32.18432 -30.65097 -29.75326 -28.32577 -28.24944 -26.90870 -24.89246 -24.81029 -23.97404 -22.74037 -21.75191 -20.54794 -20.07304 -19.04389 -18.98197 -17.66788 -17.32953 -17.29579 -16.59851 -16.34549 -16.28504 -15.98025 -15.83874 -15.55961 -15.47326 -15.22894 -14.98745 -14.80096 -14.41714 -14.36518 -14.10045 -13.64289 -13.41490 -13.32933 -13.21767 -13.11836 -12.96871 -12.83760 -12.81894 -12.74008 -12.56293 -12.46457 -12.41400 -12.29397 -12.16919 -12.06519 -11.84843 -11.78179 -11.46324 -11.34922 -11.16372 -10.95149 -10.79679 -10.47195 -9.72766 -9.09846 -8.30059 -6.33421 1.15041 1.33168 1.34063 1.44319 1.77580 2.32123 2.73317 2.86237 3.01780 3.09494 3.67929 3.76233 3.79246 3.82067 3.84545 3.99200 4.05907 4.14089 4.22333 4.30261 4.36474 4.43162 4.47705 4.57591 4.59578 4.64348 4.65079 4.72783 4.77510 4.78691 4.80487 4.81779 4.87103 4.88053 4.92213 4.93191 5.00463 5.04113 5.06679 5.14922 5.19999 5.26783 5.32177 5.37329 5.49194 5.50063 5.54654 5.91767 6.20431 6.29362 6.35751 6.57403 6.72586 7.29600 7.30134 8.86155 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.002449 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.311462 B =11432.576266 C =11638.971479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.179 4.179 4 C -0.134 4.134 5 O -0.364 6.364 6 C 0.649 3.351 7 O -0.596 6.596 8 N -0.591 5.591 9 C 0.123 3.877 10 C -0.113 4.113 11 C 0.129 3.871 12 C -0.143 4.143 13 C 0.141 3.859 14 C 0.028 3.972 15 N -0.535 5.535 16 C 0.173 3.827 17 C -0.514 4.514 18 H 0.041 0.959 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.945 3.055 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.253 1.253 25 C 0.029 3.971 26 C 0.070 3.930 27 O -0.374 6.374 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.081 0.919 47 H -0.014 1.014 48 H 0.028 0.972 49 H 0.267 0.733 50 H 0.026 0.974 51 H 0.068 0.932 52 H 0.117 0.883 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.403 4.087 27.922 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.236 4.236 4 C -0.191 4.191 5 O -0.278 6.278 6 C 0.404 3.596 7 O -0.488 6.488 8 N -0.332 5.332 9 C 0.001 3.999 10 C -0.151 4.151 11 C 0.089 3.911 12 C -0.181 4.181 13 C 0.019 3.981 14 C -0.100 4.100 15 N -0.259 5.259 16 C 0.045 3.955 17 C -0.552 4.552 18 H 0.059 0.941 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.769 3.231 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.177 1.177 25 C -0.099 4.099 26 C -0.006 4.006 27 O -0.293 6.293 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.099 0.901 47 H 0.003 0.997 48 H 0.046 0.954 49 H 0.076 0.924 50 H 0.044 0.956 51 H 0.086 0.914 52 H 0.135 0.865 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.982 4.758 27.952 29.743 hybrid contribution -0.420 -1.286 -1.223 1.824 sum 8.561 3.472 26.729 28.281 Atomic orbital electron populations 1.22470 0.94264 1.02830 1.04138 1.22406 0.94403 0.92661 0.81753 1.22460 1.01618 0.95357 1.04157 1.21871 1.02483 1.01180 0.93590 1.86292 1.71502 1.56432 1.13612 1.18118 0.78502 0.81276 0.81676 1.90877 1.42630 1.28163 1.87133 1.47099 1.52458 1.30446 1.03154 1.21807 0.93293 0.83010 1.01774 1.21981 1.03040 0.98819 0.91310 1.21435 0.84325 0.92508 0.92868 1.22278 0.98725 0.96043 1.01061 1.21462 1.00402 0.95935 0.80283 1.22816 1.00869 0.96531 0.89800 1.62068 1.21910 1.40200 1.01759 1.19933 0.93596 0.89877 0.92049 1.21209 1.37826 0.97589 0.98582 0.94056 1.25819 0.95201 1.03270 0.94601 1.70042 1.42691 1.38598 1.07321 0.85746 0.79650 0.79622 0.78098 1.19054 1.20784 1.17709 1.22633 0.89518 0.98264 0.99509 1.22697 1.01858 0.94832 0.81242 1.87923 1.30110 1.83356 1.27896 0.92252 0.92076 0.89183 0.89186 0.91902 0.92213 0.91189 0.91052 0.88096 0.89990 0.87755 0.89440 0.88371 0.91141 0.90015 0.89871 0.90273 0.94654 0.90084 0.99673 0.95402 0.92434 0.95556 0.91372 0.86494 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 2 C 0.12 2.10 1.13 -10.79 -0.01 2.09 16 3 C -0.18 -3.02 8.37 71.98 0.60 -2.42 16 4 C -0.13 -1.37 8.85 71.98 0.64 -0.74 16 5 O -0.36 -7.79 8.53 -55.46 -0.47 -8.27 16 6 C 0.65 16.58 7.74 129.79 1.00 17.58 16 7 O -0.60 -18.10 11.29 19.79 0.22 -17.87 16 8 N -0.59 -13.68 2.97 -948.45 -2.81 -16.50 16 9 C 0.12 2.27 6.24 86.50 0.54 2.81 16 10 C -0.11 -2.19 5.13 30.81 0.16 -2.03 16 11 C 0.13 3.29 0.68 -10.77 -0.01 3.28 16 12 C -0.14 -3.78 4.41 30.65 0.14 -3.64 16 13 C 0.14 3.44 6.19 86.35 0.53 3.97 16 14 C 0.03 0.89 4.33 86.30 0.37 1.26 16 15 N -0.53 -21.18 4.07 -899.82 -3.66 -24.84 16 16 C 0.17 8.12 3.79 85.56 0.32 8.44 16 17 C -0.51 -29.18 9.04 25.60 0.23 -28.95 16 18 H 0.04 2.61 7.38 -2.91 -0.02 2.58 16 19 C 0.01 0.50 5.47 84.65 0.46 0.96 16 20 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 21 Si 0.95 43.67 27.47 68.60 1.88 45.55 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 25 C 0.03 1.07 5.46 86.31 0.47 1.54 16 26 C 0.07 1.97 6.61 72.01 0.48 2.45 16 27 O -0.37 -9.93 9.04 -148.98 -1.35 -11.27 16 28 H 0.06 1.43 5.88 -2.39 -0.01 1.41 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 1.50 7.82 -2.39 -0.02 1.49 16 38 H 0.10 1.64 6.93 -2.39 -0.02 1.63 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 2.51 6.16 -2.39 -0.01 2.49 16 43 H 0.08 2.22 7.00 -2.39 -0.02 2.21 16 44 H 0.08 1.86 7.83 -2.39 -0.02 1.84 16 45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 2.45 8.09 -2.39 -0.02 2.44 16 47 H -0.01 -0.68 7.18 -2.39 -0.02 -0.70 16 48 H 0.03 1.29 7.47 -2.39 -0.02 1.27 16 49 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 50 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 51 H 0.07 2.87 6.83 -2.39 -0.02 2.86 16 52 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 53 H 0.06 1.68 6.53 -2.39 -0.02 1.66 16 Total: -1.00 -69.30 394.99 1.47 -67.83 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.82 Total: 19.64 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.53 Total: 4.04 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -6.17 Total: -99.65 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.60 Total: -37.41 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -69.30 1.47 -67.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932715052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.933 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds