Wall clock time and date at job start Sat Apr 11 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47365 * 2 1 4 4 C 1.53003 * 109.46657 * 240.00316 * 2 1 3 5 5 O 1.45202 * 109.47184 * 120.00753 * 2 1 3 6 6 C 1.34635 * 117.00451 * 59.99276 * 5 2 1 7 7 O 1.21512 * 119.99693 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00204 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00318 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47836 * 154.99947 * 9 8 6 11 11 C 1.52999 * 109.47266 * 180.02562 * 10 9 8 12 12 C 1.52946 * 109.51551 * 300.07426 * 11 10 9 13 13 C 1.52954 * 109.56676 * 59.81971 * 12 11 10 14 14 C 1.52995 * 109.51327 * 300.17225 * 13 12 11 15 15 C 1.53264 * 109.38380 * 179.73944 * 12 11 10 16 16 N 1.47150 * 108.39857 * 172.17178 * 15 12 11 17 17 C 1.36941 * 120.98996 * 129.48837 * 16 15 12 18 18 H 1.07989 * 120.00754 * 206.23247 * 17 16 15 19 19 C 1.38821 * 119.99708 * 26.22985 * 17 16 15 20 20 N 1.31621 * 119.99685 * 16.89744 * 19 17 16 21 21 Si 1.86799 * 120.00041 * 196.89708 * 19 17 16 22 22 H 1.48492 * 109.47126 * 90.00047 * 21 19 17 23 23 H 1.48497 * 109.46826 * 210.00230 * 21 19 17 24 24 H 1.48496 * 109.46779 * 329.99881 * 21 19 17 25 25 C 1.47155 * 118.02684 * 309.51096 * 16 15 12 26 26 C 1.53295 * 108.37946 * 50.58214 * 25 16 15 27 27 O 1.42895 * 109.58416 * 299.56772 * 12 11 10 28 28 H 1.08994 * 109.46830 * 299.99676 * 1 2 3 29 29 H 1.09002 * 109.47141 * 59.99761 * 1 2 3 30 30 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47262 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47576 * 300.00384 * 3 2 1 33 33 H 1.09008 * 109.46770 * 60.00291 * 3 2 1 34 34 H 1.09004 * 109.46957 * 299.99487 * 4 2 1 35 35 H 1.08988 * 109.47268 * 60.00089 * 4 2 1 36 36 H 1.09003 * 109.46845 * 180.02562 * 4 2 1 37 37 H 0.96998 * 120.00079 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47313 * 34.99050 * 9 8 6 39 39 H 1.08997 * 109.47217 * 300.05495 * 10 9 8 40 40 H 1.09004 * 109.46537 * 60.05219 * 10 9 8 41 41 H 1.09004 * 109.46172 * 60.09299 * 11 10 9 42 42 H 1.09001 * 109.46039 * 180.02562 * 11 10 9 43 43 H 1.08999 * 109.46472 * 180.15595 * 13 12 11 44 44 H 1.09000 * 109.46144 * 60.18564 * 13 12 11 45 45 H 1.08990 * 109.47678 * 299.93838 * 14 13 12 46 46 H 1.09003 * 109.47052 * 179.97438 * 14 13 12 47 47 H 1.09000 * 109.68012 * 291.90187 * 15 12 11 48 48 H 1.08998 * 109.67316 * 52.44765 * 15 12 11 49 49 H 0.97001 * 119.99763 * 179.97438 * 20 19 17 50 50 H 1.09001 * 109.68110 * 290.86586 * 25 16 15 51 51 H 1.09001 * 109.71725 * 170.31902 * 25 16 15 52 52 H 1.08992 * 109.51463 * 187.74145 * 26 25 16 53 53 H 1.09000 * 109.55128 * 67.61935 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0672 -2.6656 2.4170 9 6 1.6740 -4.0670 2.5830 10 6 2.7024 -4.7852 3.4590 11 6 2.2920 -6.2489 3.6317 12 6 0.9166 -6.3188 4.2970 13 6 -0.1120 -5.5984 3.4239 14 6 0.2993 -4.1349 3.2514 15 6 0.5056 -7.7860 4.4627 16 7 -0.7241 -7.8356 5.2693 17 6 -1.8144 -8.5500 4.8495 18 1 -2.8038 -8.2680 5.1775 19 6 -1.6476 -9.6369 4.0022 20 7 -0.4603 -10.1881 3.8647 21 14 -3.1083 -10.3172 3.0571 22 1 -3.2143 -9.6276 1.7463 23 1 -2.9203 -11.7736 2.8366 24 1 -4.3513 -10.0911 3.8374 25 6 -0.7478 -7.0943 6.5403 26 6 -0.2776 -5.6601 6.2721 27 8 0.9739 -5.6960 5.5819 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7216 -1.2491 37 1 2.6263 -2.2366 3.0835 38 1 1.6280 -4.5496 1.6067 39 1 3.6822 -4.7358 2.9838 40 1 2.7475 -4.3031 4.4356 41 1 2.2481 -6.7314 2.6552 42 1 3.0246 -6.7602 4.2562 43 1 -1.0909 -5.6468 3.9009 44 1 -0.1600 -6.0798 2.4471 45 1 0.3460 -3.6531 4.2279 46 1 -0.4339 -3.6224 2.6287 47 1 0.3206 -8.2281 3.4837 48 1 1.2995 -8.3344 4.9696 49 1 -0.3439 -10.9478 3.2729 50 1 -0.0791 -7.5719 7.2563 51 1 -1.7623 -7.0795 6.9386 52 1 -0.1562 -5.1337 7.2188 53 1 -1.0161 -5.1425 5.6599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933827372.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:56 Heat of formation + Delta-G solvation = -133.068337 kcal Electronic energy + Delta-G solvation = -32127.637473 eV Core-core repulsion = 27998.904938 eV Total energy + Delta-G solvation = -4128.732535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.90512 -41.12282 -38.87420 -37.34164 -36.17671 -35.34702 -34.45791 -33.19024 -31.97038 -31.35139 -29.04481 -28.34488 -28.26722 -27.08392 -25.01972 -24.01834 -23.86832 -22.63273 -21.55218 -20.95652 -20.18361 -19.15831 -18.73603 -17.74458 -17.29614 -17.18589 -16.91785 -16.36032 -16.18983 -15.80063 -15.57282 -15.40668 -15.33590 -15.25409 -14.72195 -14.51205 -14.46494 -14.18579 -13.54263 -13.42883 -13.30852 -13.20762 -13.08505 -13.00090 -12.95228 -12.87565 -12.83224 -12.75750 -12.48431 -12.40237 -12.27998 -12.21511 -12.11762 -11.99516 -11.78377 -11.55348 -11.46125 -11.34754 -11.06300 -10.86611 -10.65077 -10.40535 -10.09512 -8.67649 -7.88500 -5.34529 1.18640 1.43642 1.45987 1.53478 1.80578 2.47120 2.94699 3.17520 3.24948 3.55572 3.73181 3.78441 3.81561 3.84973 3.97430 4.01096 4.10134 4.27942 4.35973 4.45872 4.47138 4.48177 4.54883 4.59991 4.63200 4.65358 4.71968 4.78516 4.79488 4.84554 4.86422 4.90536 5.00450 5.04003 5.07939 5.10504 5.13786 5.18373 5.23926 5.27903 5.30516 5.31784 5.38849 5.44207 5.51226 5.58534 5.63008 5.66121 6.31871 6.47964 6.50214 7.09595 7.40552 7.79116 8.32514 9.16334 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.002818 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.629815 B = 9935.424425 C =10688.276892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.645 3.355 7 O -0.595 6.595 8 N -0.693 5.693 9 C 0.172 3.828 10 C -0.104 4.104 11 C -0.096 4.096 12 C 0.106 3.894 13 C -0.119 4.119 14 C -0.109 4.109 15 C 0.164 3.836 16 N -0.611 5.611 17 C -0.258 4.258 18 H 0.068 0.932 19 C -0.049 4.049 20 N -0.934 5.934 21 Si 0.962 3.038 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.269 1.269 25 C 0.104 3.896 26 C 0.053 3.947 27 O -0.377 6.377 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.417 0.583 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.061 0.939 48 H -0.005 1.005 49 H 0.250 0.750 50 H 0.015 0.985 51 H 0.065 0.935 52 H 0.115 0.885 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 23.223 -4.767 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.089 3.911 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.398 3.602 7 O -0.486 6.486 8 N -0.352 5.352 9 C 0.069 3.931 10 C -0.142 4.142 11 C -0.134 4.134 12 C 0.065 3.935 13 C -0.157 4.157 14 C -0.148 4.148 15 C 0.039 3.961 16 N -0.335 5.335 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.193 1.193 25 C -0.022 4.022 26 C -0.025 4.025 27 O -0.296 6.296 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.254 0.746 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.013 0.987 49 H 0.059 0.941 50 H 0.033 0.967 51 H 0.084 0.916 52 H 0.133 0.867 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.912 22.977 -5.226 24.856 hybrid contribution -1.077 -1.273 -0.291 1.692 sum 6.836 21.704 -5.516 23.414 Atomic orbital electron populations 1.22482 0.94362 1.03488 1.03526 1.22395 0.94336 0.92850 0.81561 1.21874 1.02516 0.90427 1.04306 1.22477 1.01719 1.02130 0.97427 1.86304 1.71606 1.22969 1.47375 1.18303 0.78654 0.80845 0.82368 1.90913 1.42172 1.70947 1.44539 1.44756 1.55000 1.12231 1.23177 1.20873 0.94231 0.78577 0.99462 1.21612 0.97938 0.94150 1.00508 1.21393 0.94400 0.97262 1.00376 1.21978 0.95717 0.92369 0.83398 1.21744 0.99412 0.95250 0.99337 1.21724 0.96473 0.95726 1.00872 1.21209 0.86656 0.92213 0.96065 1.44311 1.13027 1.56950 1.19203 1.19478 0.87009 1.06474 1.25871 0.91459 1.25724 0.98959 0.96623 1.03115 1.70174 1.23630 1.23887 1.40295 0.85336 0.79780 0.76819 0.78988 1.21361 1.22103 1.19339 1.21783 0.99536 0.92858 0.88002 1.23015 0.86367 0.95951 0.97143 1.87768 1.31665 1.79573 1.30576 0.91973 0.89156 0.92356 0.90983 0.88054 0.91168 0.92277 0.89191 0.91728 0.74585 0.90989 0.89118 0.89545 0.90762 0.90467 0.92363 0.93077 0.90710 0.93271 0.92059 0.98703 0.94074 0.96669 0.91611 0.86670 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 8.37 71.98 0.60 -2.90 16 2 C 0.12 2.30 1.13 -10.79 -0.01 2.29 16 3 C -0.13 -1.52 8.85 71.98 0.64 -0.88 16 4 C -0.18 -3.35 8.37 71.98 0.60 -2.74 16 5 O -0.37 -8.28 9.94 -55.44 -0.55 -8.83 16 6 C 0.64 16.98 8.02 129.79 1.04 18.03 16 7 O -0.59 -19.28 11.54 19.80 0.23 -19.05 16 8 N -0.69 -15.41 5.08 -570.13 -2.90 -18.31 16 9 C 0.17 4.43 2.45 44.99 0.11 4.54 16 10 C -0.10 -2.38 5.25 30.59 0.16 -2.22 16 11 C -0.10 -2.89 4.94 30.58 0.15 -2.74 16 12 C 0.11 3.92 0.68 -10.74 -0.01 3.91 16 13 C -0.12 -4.32 4.19 30.58 0.13 -4.19 16 14 C -0.11 -3.23 5.35 30.60 0.16 -3.07 16 15 C 0.16 7.95 4.10 86.34 0.35 8.31 16 16 N -0.61 -30.78 2.57 -697.60 -1.79 -32.57 16 17 C -0.26 -14.23 9.65 84.04 0.81 -13.42 16 18 H 0.07 3.62 7.88 -2.92 -0.02 3.60 16 19 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 20 N -0.93 -55.42 11.14 21.65 0.24 -55.18 16 21 Si 0.96 45.40 29.59 68.60 2.03 47.43 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 C 0.10 4.30 6.73 86.35 0.58 4.88 16 26 C 0.05 1.77 6.60 72.08 0.48 2.25 16 27 O -0.38 -13.21 8.93 -148.98 -1.33 -14.54 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 1.49 5.88 -2.38 -0.01 1.48 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.42 6.94 8.71 -92.71 -0.81 6.13 16 38 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 1.88 7.70 -2.38 -0.02 1.86 16 41 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.06 2.36 6.11 -2.39 -0.01 2.34 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 2.09 7.70 -2.39 -0.02 2.08 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.06 3.34 6.13 -2.39 -0.01 3.33 16 48 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 50 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 2.59 7.96 -2.39 -0.02 2.57 16 52 H 0.12 3.02 8.14 -2.39 -0.02 3.01 16 53 H 0.05 1.63 6.26 -2.39 -0.01 1.62 16 Total: -1.00 -68.68 397.99 2.23 -66.45 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.08 Total: 24.88 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.22 Total: 9.71 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.45 Total: -106.06 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.65 Total: -42.42 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -68.68 2.23 -66.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933827372.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.613 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds