Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 C 1.53005 * 109.46690 * 239.99870 * 2 1 3 5 5 O 1.45197 * 109.47317 * 119.99972 * 2 1 3 6 6 C 1.34640 * 117.00196 * 59.99775 * 5 2 1 7 7 O 1.21514 * 119.99721 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00346 * 180.02562 * 6 5 2 9 9 C 1.46707 * 119.99960 * 180.02562 * 8 6 5 10 10 H 1.11766 * 105.17881 * 319.33731 * 9 8 6 11 11 C 1.51559 * 110.48021 * 204.98281 * 9 8 6 12 12 C 1.53070 * 113.10970 * 262.83731 * 11 9 8 13 13 H 1.09506 * 112.87429 * 179.73488 * 12 11 9 14 14 C 1.55383 * 106.49974 * 303.64220 * 12 11 9 15 15 C 1.55634 * 99.54328 * 77.10406 * 14 12 11 16 16 H 1.09991 * 110.85947 * 163.55193 * 15 14 12 17 17 C 1.51307 * 110.91751 * 74.03908 * 9 8 6 18 18 N 1.47110 * 102.89523 * 43.92050 * 15 14 12 19 19 C 1.45106 * 115.68942 * 195.52038 * 18 15 14 20 20 C 1.52992 * 109.46776 * 297.30561 * 19 18 15 21 21 H 1.09004 * 109.47397 * 58.95556 * 20 19 18 22 22 O 1.42903 * 109.47611 * 298.95003 * 20 19 18 23 23 C 1.50706 * 109.47109 * 178.95493 * 20 19 18 24 24 H 1.08004 * 119.99826 * 359.97438 * 23 20 19 25 25 C 1.37874 * 120.00216 * 180.02562 * 23 20 19 26 26 N 1.31514 * 119.99910 * 359.97438 * 25 23 20 27 27 Si 1.86798 * 120.00128 * 179.97438 * 25 23 20 28 28 H 1.48496 * 109.47343 * 179.97438 * 27 25 23 29 29 H 1.48495 * 109.46979 * 299.99720 * 27 25 23 30 30 H 1.48500 * 109.47126 * 59.99657 * 27 25 23 31 31 C 1.46951 * 107.99721 * 325.36562 * 18 15 14 32 32 H 1.09001 * 109.47184 * 300.00062 * 1 2 3 33 33 H 1.09001 * 109.47743 * 59.99830 * 1 2 3 34 34 H 1.09005 * 109.47520 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46960 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47018 * 299.99914 * 3 2 1 37 37 H 1.08999 * 109.47584 * 60.00051 * 3 2 1 38 38 H 1.09002 * 109.47372 * 299.99631 * 4 2 1 39 39 H 1.08993 * 109.47323 * 60.00350 * 4 2 1 40 40 H 1.09002 * 109.47065 * 180.02562 * 4 2 1 41 41 H 0.96990 * 120.00138 * 359.97438 * 8 6 5 42 42 H 1.09920 * 109.27540 * 141.28895 * 11 9 8 43 43 H 1.09894 * 109.36417 * 24.50568 * 11 9 8 44 44 H 1.08804 * 111.50620 * 319.75436 * 14 12 11 45 45 H 1.08849 * 111.42640 * 194.34043 * 14 12 11 46 46 H 1.09790 * 109.71452 * 333.76069 * 17 9 8 47 47 H 1.10903 * 107.99162 * 219.87111 * 17 9 8 48 48 H 1.08999 * 109.46799 * 177.30553 * 19 18 15 49 49 H 1.08998 * 109.47013 * 57.30627 * 19 18 15 50 50 H 0.96696 * 114.00144 * 300.01111 * 22 20 19 51 51 H 0.97001 * 120.00519 * 0.02562 * 26 25 23 52 52 H 1.09411 * 109.79232 * 128.80809 * 31 18 15 53 53 H 1.08605 * 111.16880 * 249.92194 * 31 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6654 2.4172 9 6 1.6735 -4.0688 2.5834 10 1 0.6030 -4.1121 2.2648 11 6 1.6983 -4.4567 4.0483 12 6 2.9923 -5.1625 4.4611 13 1 3.0080 -5.4368 5.5211 14 6 3.1404 -6.3947 3.5262 15 6 3.6393 -5.6813 2.2361 16 1 4.0824 -6.4040 1.5353 17 6 2.4401 -4.9613 1.6320 18 7 4.6416 -4.7354 2.7507 19 6 5.0391 -3.6809 1.8366 20 6 5.7034 -4.2980 0.6043 21 1 5.0046 -4.9780 0.1169 22 8 6.8705 -5.0196 1.0033 23 6 6.0931 -3.2045 -0.3569 24 1 5.8871 -2.1727 -0.1132 25 6 6.7117 -3.5215 -1.5476 26 7 6.9620 -4.7780 -1.8445 27 14 7.1941 -2.1662 -2.7392 28 1 7.8390 -2.7651 -3.9353 29 1 5.9811 -1.4165 -3.1535 30 1 8.1462 -1.2396 -2.0758 31 6 4.1872 -4.2633 4.0661 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 3.1300 1.4424 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.6766 -1.7490 -1.2493 39 1 1.6766 -0.2075 -2.1392 40 1 3.1299 -0.7218 -1.2491 41 1 2.6268 -2.2366 3.0833 42 1 0.8469 -5.1179 4.2631 43 1 1.5691 -3.5568 4.6657 44 1 2.1839 -6.8854 3.3584 45 1 3.8875 -7.0914 3.9020 46 1 2.7468 -4.3849 0.7494 47 1 1.7405 -5.7293 1.2438 48 1 5.7441 -3.0151 2.3344 49 1 4.1593 -3.1150 1.5301 50 1 7.5372 -4.4760 1.4448 51 1 6.7112 -5.4818 -1.2260 52 1 4.9903 -4.3811 4.7997 53 1 3.8866 -3.2205 4.0262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934614717.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -155.971552 kcal Electronic energy + Delta-G solvation = -33563.944683 eV Core-core repulsion = 29434.218990 eV Total energy + Delta-G solvation = -4129.725693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.29275 -41.29517 -38.50436 -37.97702 -36.00308 -35.08316 -34.28398 -33.98007 -32.31168 -30.69559 -29.21238 -28.41144 -28.33020 -26.64541 -25.40365 -24.36547 -23.43111 -22.67466 -21.54358 -20.70240 -19.70002 -19.41165 -19.26102 -17.72422 -17.53229 -17.15929 -16.94450 -16.45478 -16.11049 -15.79258 -15.68372 -15.50602 -15.39301 -14.95940 -14.59818 -14.48306 -14.37355 -14.19967 -14.12764 -13.72156 -13.40749 -13.34638 -13.16640 -12.95371 -12.94302 -12.89535 -12.74340 -12.63508 -12.60174 -12.44758 -12.32098 -12.13731 -12.06561 -11.99539 -11.71148 -11.42801 -11.32237 -11.15810 -11.12965 -11.04469 -10.66263 -10.21310 -10.06865 -8.85053 -8.64501 -6.48069 1.13470 1.44565 1.52988 1.72335 1.76731 2.50206 3.00681 3.10862 3.14989 3.51820 3.57045 3.65487 3.71536 3.76486 3.90957 3.94305 4.02602 4.06234 4.17509 4.24346 4.33643 4.39803 4.49266 4.53878 4.56548 4.58306 4.62032 4.68390 4.72144 4.77547 4.80250 4.83824 4.88975 4.94303 4.97319 5.04187 5.07692 5.11640 5.21588 5.24934 5.26035 5.32017 5.36808 5.40971 5.46271 5.58281 5.82020 6.07610 6.31517 6.33196 6.47057 6.54435 7.23526 7.31223 7.49409 8.72644 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007294 B = 0.006630 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3837.766568 B = 4222.531085 C = 7292.831597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.373 6.373 6 C 0.645 3.355 7 O -0.592 6.592 8 N -0.698 5.698 9 C 0.180 3.820 10 H 0.070 0.930 11 C -0.111 4.111 12 C -0.088 4.088 13 H 0.129 0.871 14 C -0.109 4.109 15 C 0.090 3.910 16 H 0.051 0.949 17 C -0.145 4.145 18 N -0.556 5.556 19 C 0.077 3.923 20 C 0.228 3.772 21 H 0.004 0.996 22 O -0.582 6.582 23 C -0.654 4.654 24 H 0.042 0.958 25 C -0.016 4.016 26 N -0.920 5.920 27 Si 1.107 2.893 28 H -0.282 1.282 29 H -0.274 1.274 30 H -0.264 1.264 31 C 0.056 3.944 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.405 0.595 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.027 0.973 50 H 0.359 0.641 51 H 0.266 0.734 52 H 0.073 0.927 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.528 7.708 14.317 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.091 3.909 3 C -0.192 4.192 4 C -0.239 4.239 5 O -0.288 6.288 6 C 0.399 3.601 7 O -0.483 6.483 8 N -0.359 5.359 9 C 0.077 3.923 10 H 0.088 0.912 11 C -0.149 4.149 12 C -0.106 4.106 13 H 0.147 0.853 14 C -0.147 4.147 15 C -0.018 4.018 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.281 5.281 19 C -0.051 4.051 20 C 0.171 3.829 21 H 0.022 0.978 22 O -0.387 6.387 23 C -0.692 4.692 24 H 0.060 0.940 25 C -0.218 4.218 26 N -0.555 5.555 27 Si 0.928 3.072 28 H -0.208 1.208 29 H -0.199 1.199 30 H -0.189 1.189 31 C -0.071 4.071 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.242 0.758 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.045 0.955 50 H 0.204 0.796 51 H 0.076 0.924 52 H 0.091 0.909 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.149 7.074 12.193 19.973 hybrid contribution -0.474 0.485 0.868 1.101 sum -14.623 7.559 13.061 21.013 Atomic orbital electron populations 1.22413 0.92844 1.03699 1.03925 1.22375 0.95189 0.92508 0.80813 1.21884 1.01951 0.90604 1.04752 1.22471 1.00715 1.02187 0.98506 1.86293 1.71810 1.23463 1.47213 1.18317 0.78679 0.80747 0.82365 1.90868 1.42760 1.71006 1.43643 1.45327 1.55107 1.12349 1.23068 1.20640 0.97911 0.76969 0.96753 0.91166 1.21805 0.99335 1.02879 0.90849 1.22567 0.92790 0.94164 1.01103 0.85334 1.22901 1.01711 0.96978 0.93066 1.22285 0.88575 0.93441 0.97526 0.93036 1.22208 0.98554 0.99611 0.98140 1.60096 1.43490 1.20292 1.04222 1.21931 0.97776 0.92182 0.93205 1.19201 0.83677 0.89700 0.90352 0.97832 1.86406 1.30984 1.40955 1.80321 1.22766 1.45331 0.94154 1.06959 0.93951 1.27213 0.93280 1.01734 0.99530 1.70770 1.44371 1.00764 1.39645 0.83108 0.77188 0.72549 0.74326 1.20769 1.19927 1.18930 1.22721 0.97400 0.97144 0.89834 0.91044 0.88991 0.92091 0.92368 0.87719 0.90131 0.92587 0.88825 0.94081 0.75761 0.87338 0.88922 0.88722 0.90673 0.95679 0.91079 0.92613 0.95546 0.79574 0.92403 0.90884 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.37 71.98 0.60 -3.46 16 2 C 0.13 3.54 1.13 -10.79 -0.01 3.53 16 3 C -0.13 -2.77 8.85 71.98 0.64 -2.13 16 4 C -0.18 -5.99 8.37 71.98 0.60 -5.39 16 5 O -0.37 -12.07 9.94 -55.49 -0.55 -12.62 16 6 C 0.65 22.10 7.36 129.79 0.95 23.05 16 7 O -0.59 -23.05 11.07 19.80 0.22 -22.83 16 8 N -0.70 -19.71 3.33 -571.39 -1.90 -21.61 16 9 C 0.18 4.59 2.09 43.93 0.09 4.68 16 10 H 0.07 1.87 7.68 -0.88 -0.01 1.86 16 11 C -0.11 -1.78 4.75 30.15 0.14 -1.63 16 12 C -0.09 -1.53 4.11 -9.38 -0.04 -1.57 16 13 H 0.13 1.47 8.18 -2.12 -0.02 1.45 16 14 C -0.11 -2.42 6.26 32.32 0.20 -2.22 16 15 C 0.09 3.02 3.06 45.57 0.14 3.16 16 16 H 0.05 2.13 7.79 -1.86 -0.01 2.12 16 17 C -0.14 -4.82 4.06 29.83 0.12 -4.70 16 18 N -0.56 -19.47 4.36 -866.13 -3.78 -23.24 16 19 C 0.08 3.32 4.22 86.64 0.37 3.69 16 20 C 0.23 12.29 2.35 29.85 0.07 12.36 16 21 H 0.00 0.24 7.04 -2.39 -0.02 0.22 16 22 O -0.58 -31.47 11.90 -148.98 -1.77 -33.24 16 23 C -0.65 -38.34 8.76 25.60 0.22 -38.11 16 24 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 25 C -0.02 -0.94 5.40 84.65 0.46 -0.48 16 26 N -0.92 -59.47 13.53 21.45 0.29 -59.18 16 27 Si 1.11 52.12 29.90 68.60 2.05 54.17 16 28 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 29 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 30 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 31 C 0.06 1.38 5.89 86.86 0.51 1.90 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.79 5.88 -2.38 -0.01 1.78 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 2.21 5.88 -2.39 -0.01 2.19 16 39 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.41 10.15 6.82 -92.72 -0.63 9.51 16 42 H 0.11 1.23 8.22 -1.90 -0.02 1.21 16 43 H 0.09 1.18 8.01 -1.91 -0.02 1.16 16 44 H 0.09 1.72 7.89 -2.49 -0.02 1.70 16 45 H 0.07 1.71 8.13 -2.47 -0.02 1.69 16 46 H 0.02 1.10 6.44 -1.97 -0.01 1.09 16 47 H 0.07 2.22 8.30 -1.36 -0.01 2.21 16 48 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 49 H 0.03 1.17 4.88 -2.39 -0.01 1.16 16 50 H 0.36 17.57 9.04 -74.06 -0.67 16.90 16 51 H 0.27 17.84 6.47 -92.71 -0.60 17.24 16 52 H 0.07 1.73 8.18 -2.17 -0.02 1.71 16 53 H 0.04 1.03 5.50 -2.60 -0.01 1.01 16 Total: -1.00 -77.64 393.58 -0.55 -78.19 By element: Atomic # 1 Polarization: 47.89 SS G_CDS: -0.18 Total: 47.71 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 5.07 Total: -7.34 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -5.39 Total: -104.04 kcal Atomic # 8 Polarization: -66.59 SS G_CDS: -2.10 Total: -68.70 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Total: -77.64 -0.55 -78.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934614717.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.782 kcal (2) G-P(sol) polarization free energy of solvation -77.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds