Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47219 * 2 1 4 4 H 1.09006 * 109.82197 * 305.88068 * 3 2 1 5 5 C 1.54379 * 109.83172 * 185.00018 * 3 2 1 6 6 C 1.55310 * 102.25288 * 219.03726 * 5 3 2 7 7 C 1.54954 * 100.94103 * 34.12783 * 6 5 3 8 8 H 1.08997 * 110.30451 * 82.56983 * 7 6 5 9 9 C 1.50696 * 110.30712 * 204.64120 * 7 6 5 10 10 O 1.21284 * 119.99926 * 116.57960 * 9 7 6 11 11 N 1.34771 * 120.00068 * 296.57509 * 9 7 6 12 12 C 1.46927 * 120.63454 * 354.83388 * 11 9 7 13 13 C 1.53188 * 108.77595 * 233.58613 * 12 11 9 14 14 C 1.53040 * 109.31325 * 305.36505 * 13 12 11 15 15 N 1.46501 * 109.46049 * 181.38681 * 14 13 12 16 16 C 1.36931 * 120.00015 * 299.97137 * 15 14 13 17 17 H 1.08004 * 120.00161 * 38.46980 * 16 15 14 18 18 C 1.38814 * 119.99941 * 218.47277 * 16 15 14 19 19 N 1.31614 * 120.00245 * 15.18366 * 18 16 15 20 20 Si 1.86808 * 120.00006 * 195.18181 * 18 16 15 21 21 H 1.48498 * 109.47201 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47232 * 300.00247 * 20 18 16 23 23 H 1.48500 * 109.46709 * 60.00040 * 20 18 16 24 24 C 1.46506 * 119.99913 * 119.96644 * 15 14 13 25 25 C 1.52992 * 109.47544 * 276.84663 * 24 15 14 26 26 O 1.42902 * 109.47036 * 64.99850 * 25 24 15 27 27 C 1.53035 * 109.53248 * 61.37206 * 14 13 12 28 28 C 1.46927 * 120.63035 * 174.81057 * 11 9 7 29 29 O 1.43235 * 109.90977 * 66.81628 * 3 2 1 30 30 H 1.09000 * 109.46828 * 60.00472 * 1 2 3 31 31 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47082 * 300.00561 * 1 2 3 33 33 H 1.08996 * 109.47082 * 239.99439 * 2 1 3 34 34 H 1.09000 * 109.46828 * 119.99528 * 2 1 3 35 35 H 1.08996 * 110.85247 * 100.84503 * 5 3 2 36 36 H 1.08997 * 111.02014 * 337.30362 * 5 3 2 37 37 H 1.09001 * 111.12397 * 276.21708 * 6 5 3 38 38 H 1.08997 * 111.16294 * 152.06474 * 6 5 3 39 39 H 1.09000 * 109.58926 * 113.79432 * 12 11 9 40 40 H 1.09001 * 109.58374 * 353.37102 * 12 11 9 41 41 H 1.08998 * 109.49730 * 185.41159 * 13 12 11 42 42 H 1.09003 * 109.52766 * 65.33039 * 13 12 11 43 43 H 1.08997 * 109.45567 * 301.35135 * 14 13 12 44 44 H 0.97004 * 120.00615 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47081 * 36.85120 * 24 15 14 46 46 H 1.09010 * 109.46824 * 156.84601 * 24 15 14 47 47 H 1.08996 * 109.47556 * 185.00004 * 25 24 15 48 48 H 1.09005 * 109.47542 * 305.00573 * 25 24 15 49 49 H 0.96696 * 114.00167 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.49733 * 58.57429 * 27 14 13 51 51 H 1.08991 * 109.50095 * 178.67659 * 27 14 13 52 52 H 1.09007 * 109.58594 * 246.20243 * 28 11 9 53 53 H 1.09004 * 109.58863 * 6.62770 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9913 -0.8309 5 6 3.5786 1.4540 -0.1266 6 6 3.9797 2.6070 0.8335 7 6 2.8991 2.4622 1.9346 8 1 3.1871 1.6899 2.6479 9 6 2.6942 3.7767 2.6424 10 8 1.6210 4.3384 2.5796 11 7 3.7033 4.3281 3.3452 12 6 4.9713 3.6082 3.5251 13 6 5.2915 3.5396 5.0216 14 6 5.2833 4.9539 5.6062 15 7 5.6216 4.8953 7.0304 16 6 4.8360 4.1771 7.8918 17 1 4.4139 3.2335 7.5786 18 6 4.5819 4.6617 9.1675 19 7 4.8321 5.9215 9.4548 20 14 3.8848 3.5258 10.4765 21 1 3.7064 4.2806 11.7429 22 1 2.5723 2.9974 10.0255 23 1 4.8221 2.3963 10.7019 24 6 6.8006 5.6050 7.5330 25 6 8.0466 4.7454 7.3108 26 8 8.2710 4.5854 5.9086 27 6 3.8923 5.5692 5.4376 28 6 3.5564 5.6610 3.9457 29 8 1.7028 2.0791 1.2380 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8821 1.6775 -1.1493 36 1 4.0053 0.5073 0.2047 37 1 3.9073 3.5747 0.3371 38 1 4.9787 2.4507 1.2405 39 1 5.7693 4.1377 3.0046 40 1 4.8783 2.5986 3.1247 41 1 6.2757 3.0932 5.1630 42 1 4.5406 2.9326 5.5274 43 1 6.0174 5.5670 5.0836 44 1 4.6549 6.2601 10.3464 45 1 6.9109 6.5493 7.0001 46 1 6.6798 5.8011 8.5985 47 1 8.9099 5.2330 7.7636 48 1 7.8999 3.7674 7.7691 49 1 9.0470 4.0502 5.6930 50 1 3.1543 4.9430 5.9389 51 1 3.8805 6.5674 5.8751 52 1 4.2390 6.3581 3.4595 53 1 2.5297 6.0061 3.8230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098383759.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -115.080964 kcal Electronic energy + Delta-G solvation = -31908.809235 eV Core-core repulsion = 27780.856691 eV Total energy + Delta-G solvation = -4127.952544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.56378 -38.98246 -37.38159 -36.18067 -34.69622 -33.76506 -32.62363 -31.84936 -30.74900 -30.31171 -28.69831 -27.57553 -25.19281 -24.25045 -23.22243 -22.50952 -22.01482 -21.19079 -20.53789 -19.84735 -18.78938 -17.75089 -16.77241 -16.47011 -16.20694 -15.90215 -15.62626 -14.94284 -14.69652 -14.48363 -14.36818 -14.07733 -13.62666 -13.56967 -13.46722 -13.37457 -13.27196 -13.06689 -12.77293 -12.63711 -12.12537 -12.05620 -12.01375 -11.87308 -11.63403 -11.40248 -11.16213 -11.09200 -11.08766 -10.97023 -10.88130 -10.74627 -10.67416 -10.41247 -10.17172 -9.94648 -9.91238 -9.82963 -9.42692 -9.19629 -9.15812 -8.50009 -8.28990 -6.51933 -5.79871 -3.39113 2.77949 2.99477 3.35399 3.41050 3.42748 3.79005 4.18020 4.40937 4.45272 4.50480 4.81895 4.85775 4.92631 5.03086 5.09367 5.14790 5.19046 5.25435 5.27776 5.36860 5.44213 5.52578 5.57354 5.58845 5.64217 5.66556 5.75540 5.79658 5.81353 5.93595 6.03494 6.05175 6.15469 6.16394 6.21993 6.22961 6.41272 6.48051 6.52816 6.67379 6.78947 6.86019 6.95341 7.07508 7.24784 7.33247 7.60803 7.68102 7.81275 8.27694 8.42096 8.53471 9.21292 9.82317 10.42440 11.21742 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.003023 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.365319 B = 9258.852166 C =10045.431315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.080 0.920 5 C -0.150 4.150 6 C -0.146 4.146 7 C 0.066 3.934 8 H 0.095 0.905 9 C 0.513 3.487 10 O -0.531 6.531 11 N -0.601 5.601 12 C 0.108 3.892 13 C -0.137 4.137 14 C 0.188 3.812 15 N -0.574 5.574 16 C -0.250 4.250 17 H 0.059 0.941 18 C 0.010 3.990 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.290 1.290 22 H -0.281 1.281 23 H -0.284 1.284 24 C 0.151 3.849 25 C 0.054 3.946 26 O -0.568 6.568 27 C -0.136 4.136 28 C 0.114 3.886 29 O -0.345 6.345 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.255 0.745 45 H 0.026 0.974 46 H 0.111 0.889 47 H 0.021 0.979 48 H 0.039 0.961 49 H 0.354 0.646 50 H 0.068 0.932 51 H 0.069 0.931 52 H 0.060 0.940 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -8.484 -17.613 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.098 0.902 5 C -0.188 4.188 6 C -0.184 4.184 7 C 0.005 3.995 8 H 0.112 0.888 9 C 0.300 3.700 10 O -0.407 6.407 11 N -0.336 5.336 12 C -0.016 4.016 13 C -0.177 4.177 14 C 0.081 3.919 15 N -0.293 5.293 16 C -0.380 4.380 17 H 0.076 0.924 18 C -0.190 4.190 19 N -0.539 5.539 20 Si 0.727 3.273 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.210 1.210 24 C 0.024 3.976 25 C -0.026 4.026 26 O -0.371 6.371 27 C -0.176 4.176 28 C -0.009 4.009 29 O -0.264 6.264 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.129 0.871 47 H 0.040 0.960 48 H 0.057 0.943 49 H 0.198 0.802 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.079 0.921 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.200 -7.654 -17.416 19.150 hybrid contribution 0.473 -1.056 0.929 1.483 sum 2.673 -8.710 -16.487 18.837 Atomic orbital electron populations 1.21714 0.95216 1.01319 1.02532 1.21904 0.97152 0.95606 1.02316 1.22863 0.94207 0.93605 0.87503 0.90178 1.23190 0.95357 0.99313 1.00892 1.23330 0.99216 1.00089 0.95774 1.22790 0.86251 0.95196 0.95283 0.88767 1.20308 0.84001 0.86384 0.79323 1.90686 1.24929 1.63313 1.61766 1.48083 1.14504 1.19016 1.51970 1.21946 0.84925 0.95799 0.98895 1.22307 1.01894 1.01332 0.92163 1.20198 0.92822 0.92486 0.86410 1.43701 1.25440 1.58243 1.01914 1.18953 1.25407 0.99589 0.94060 0.92387 1.25234 0.98983 0.95020 0.99730 1.69863 1.51080 1.12360 1.20579 0.86460 0.79305 0.80276 0.81255 1.21624 1.20746 1.21033 1.21083 0.82763 0.91131 1.02625 1.23246 0.98899 1.00230 0.80212 1.86588 1.50116 1.75017 1.25415 1.22340 1.00554 1.02440 0.92290 1.21743 1.02274 0.82138 0.94702 1.88571 1.27421 1.77709 1.32666 0.92933 0.92981 0.91737 0.91107 0.91395 0.89744 0.90001 0.89826 0.88702 0.91517 0.90925 0.90786 0.91969 0.92738 0.93474 0.95586 0.87118 0.96047 0.94295 0.80177 0.91304 0.91197 0.92143 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.83 37.16 0.37 -1.02 16 2 C -0.13 -1.14 5.51 -26.73 -0.15 -1.28 16 3 C 0.08 0.76 3.51 -26.01 -0.09 0.67 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.15 -1.15 6.54 -24.78 -0.16 -1.31 16 6 C -0.15 -1.38 5.79 -24.48 -0.14 -1.52 16 7 C 0.07 0.86 2.92 -26.85 -0.08 0.78 16 8 H 0.09 1.13 7.43 -51.93 -0.39 0.75 16 9 C 0.51 8.64 7.10 -10.99 -0.08 8.56 16 10 O -0.53 -11.14 15.96 -13.80 -0.22 -11.36 16 11 N -0.60 -9.48 2.97 -172.76 -0.51 -9.99 16 12 C 0.11 1.45 5.42 -3.71 -0.02 1.43 16 13 C -0.14 -2.34 5.30 -26.61 -0.14 -2.49 16 14 C 0.19 3.74 1.93 -67.89 -0.13 3.61 16 15 N -0.57 -13.33 2.36 -165.62 -0.39 -13.73 16 16 C -0.25 -6.45 8.26 -15.06 -0.12 -6.57 16 17 H 0.06 1.52 6.86 -52.48 -0.36 1.16 16 18 C 0.01 0.26 5.04 -17.43 -0.09 0.17 16 19 N -0.90 -24.76 11.25 55.49 0.62 -24.14 16 20 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.15 3.38 5.57 -4.04 -0.02 3.36 16 25 C 0.05 1.00 7.39 37.15 0.27 1.27 16 26 O -0.57 -9.40 12.07 -35.23 -0.43 -9.82 16 27 C -0.14 -2.73 5.31 -26.61 -0.14 -2.87 16 28 C 0.11 1.94 6.44 -3.71 -0.02 1.91 16 29 O -0.35 -4.97 9.91 -54.58 -0.54 -5.51 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.53 7.86 -51.93 -0.41 0.13 16 37 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.09 0.72 6.55 -51.93 -0.34 0.38 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.79 4.76 -51.93 -0.25 0.55 16 41 H 0.07 1.26 7.64 -51.93 -0.40 0.87 16 42 H 0.06 1.20 7.06 -51.93 -0.37 0.83 16 43 H 0.05 1.09 7.50 -51.93 -0.39 0.70 16 44 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 46 H 0.11 2.80 5.45 -51.92 -0.28 2.52 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.35 4.13 9.12 45.56 0.42 4.54 16 50 H 0.07 1.58 7.71 -51.93 -0.40 1.18 16 51 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 52 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 53 H 0.08 1.52 7.00 -51.93 -0.36 1.15 16 LS Contribution 404.07 15.07 6.09 6.09 Total: -1.00 -31.77 404.07 -9.71 -41.49 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -8.56 Total: 6.10 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.75 Total: 4.70 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.28 Total: -47.85 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -1.19 Total: -26.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.77 -9.71 -41.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098383759.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.593 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds