Wall clock time and date at job start Sat Apr 11 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 H 1.09001 * 110.33253 * 304.19944 * 3 2 1 5 5 C 1.54483 * 110.46520 * 181.88961 * 3 2 1 6 6 C 1.54512 * 104.06111 * 217.14316 * 5 3 2 7 7 C 1.54483 * 104.06220 * 359.97438 * 6 5 3 8 8 H 1.09003 * 110.46720 * 265.10289 * 7 6 5 9 9 C 1.50697 * 110.37185 * 142.81372 * 7 6 5 10 10 O 1.21285 * 119.99859 * 248.16660 * 9 7 6 11 11 N 1.34771 * 120.00440 * 68.16145 * 9 7 6 12 12 C 1.46921 * 120.63385 * 179.97438 * 11 9 7 13 13 C 1.53188 * 108.77749 * 233.63413 * 12 11 9 14 14 C 1.53036 * 109.31544 * 305.36407 * 13 12 11 15 15 N 1.46501 * 109.46218 * 181.38585 * 14 13 12 16 16 C 1.36938 * 119.99913 * 299.97076 * 15 14 13 17 17 H 1.07993 * 120.00050 * 326.14413 * 16 15 14 18 18 C 1.38816 * 119.99534 * 146.14691 * 16 15 14 19 19 N 1.31615 * 120.00179 * 337.66494 * 18 16 15 20 20 Si 1.86800 * 119.99701 * 157.66338 * 18 16 15 21 21 H 1.48496 * 109.47098 * 89.99752 * 20 18 16 22 22 H 1.48499 * 109.46982 * 210.00033 * 20 18 16 23 23 H 1.48504 * 109.47114 * 329.99862 * 20 18 16 24 24 C 1.46501 * 119.99818 * 119.97490 * 15 14 13 25 25 C 1.53002 * 109.47263 * 84.43620 * 24 15 14 26 26 O 1.42908 * 109.46821 * 64.99796 * 25 24 15 27 27 C 1.53040 * 109.52461 * 61.36938 * 14 13 12 28 28 C 1.46930 * 120.62734 * 0.03059 * 11 9 7 29 29 O 1.44421 * 110.37287 * 66.45364 * 3 2 1 30 30 H 1.09007 * 109.47095 * 59.99939 * 1 2 3 31 31 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47373 * 300.00313 * 1 2 3 33 33 H 1.09005 * 109.46880 * 240.00016 * 2 1 3 34 34 H 1.09003 * 109.46696 * 120.00341 * 2 1 3 35 35 H 1.09000 * 110.51334 * 335.78680 * 5 3 2 36 36 H 1.08994 * 110.50881 * 98.36356 * 5 3 2 37 37 H 1.08994 * 110.50988 * 241.36055 * 6 5 3 38 38 H 1.08994 * 110.51357 * 118.64292 * 6 5 3 39 39 H 1.09002 * 109.58544 * 113.84514 * 12 11 9 40 40 H 1.09009 * 109.70525 * 353.48936 * 12 11 9 41 41 H 1.09008 * 109.49720 * 185.41219 * 13 12 11 42 42 H 1.09002 * 109.52524 * 65.33399 * 13 12 11 43 43 H 1.09004 * 109.46214 * 301.36178 * 14 13 12 44 44 H 0.97002 * 120.00096 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.47063 * 324.43761 * 24 15 14 46 46 H 1.09000 * 109.47005 * 204.43797 * 24 15 14 47 47 H 1.09001 * 109.47345 * 184.99733 * 25 24 15 48 48 H 1.08996 * 109.47325 * 305.00285 * 25 24 15 49 49 H 0.96697 * 113.99786 * 179.97438 * 26 25 24 50 50 H 1.09007 * 109.49506 * 58.58381 * 27 14 13 51 51 H 1.09004 * 109.49919 * 178.67526 * 27 14 13 52 52 H 1.09006 * 109.58156 * 246.15225 * 28 11 9 53 53 H 1.08996 * 109.58884 * 6.57058 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6247 1.9911 -0.8454 5 6 3.5839 1.4695 -0.0477 6 6 3.9667 2.6606 0.8590 7 6 2.6088 3.2127 1.3467 8 1 2.2800 4.0334 0.7092 9 6 2.7126 3.6710 2.7785 10 8 2.1248 3.0689 3.6520 11 7 3.4587 4.7497 3.0885 12 6 3.5691 5.2089 4.4797 13 6 3.1900 6.6918 4.5411 14 6 4.0527 7.4763 3.5500 15 7 3.7158 8.8998 3.6298 16 6 2.4400 9.3176 3.3600 17 1 1.8505 8.8055 2.6140 18 6 1.9044 10.3994 4.0455 19 7 2.3979 10.7471 5.2151 20 14 0.4835 11.3618 3.3078 21 1 -0.8018 10.7632 3.7494 22 1 0.5537 12.7740 3.7616 23 1 0.5690 11.3131 1.8261 24 6 4.7440 9.8763 3.9981 25 6 5.5405 10.2724 2.7532 26 8 4.6827 10.9542 1.8359 27 6 3.7904 6.9690 2.1302 28 6 4.1761 5.4896 2.0413 29 8 1.6977 2.0968 1.2411 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.9946 0.5407 0.3482 36 1 3.9316 1.6357 -1.0673 37 1 4.5036 3.4180 0.2880 38 1 4.5666 2.3207 1.7031 39 1 4.5941 5.0790 4.8271 40 1 2.8933 4.6325 5.1117 41 1 3.3597 7.0693 5.5495 42 1 2.1381 6.8100 4.2807 43 1 5.1056 7.3379 3.7962 44 1 2.0234 11.5028 5.6942 45 1 5.4161 9.4360 4.7346 46 1 4.2694 10.7610 4.4225 47 1 6.3609 10.9299 3.0407 48 1 5.9417 9.3770 2.2784 49 1 5.1219 11.2357 1.0217 50 1 2.7328 7.0841 1.8924 51 1 4.3875 7.5438 1.4223 52 1 5.2508 5.3827 2.1894 53 1 3.8995 5.0981 1.0624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098383763.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:48 Heat of formation + Delta-G solvation = -109.447085 kcal Electronic energy + Delta-G solvation = -31767.845663 eV Core-core repulsion = 27640.137423 eV Total energy + Delta-G solvation = -4127.708240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.58822 -39.01423 -37.42423 -36.14196 -34.64964 -33.84654 -32.58220 -31.84926 -30.84419 -30.30171 -28.70417 -27.62276 -25.24009 -24.25880 -23.28235 -22.52481 -21.98719 -21.20545 -20.68803 -19.92188 -18.86124 -17.36094 -16.69313 -16.60065 -16.34148 -16.13528 -15.62488 -14.86552 -14.58719 -14.50083 -14.38088 -14.02586 -13.80918 -13.72856 -13.59454 -13.37724 -13.28276 -13.12456 -12.76344 -12.55747 -12.16749 -12.06210 -11.98756 -11.87979 -11.66745 -11.43326 -11.18141 -11.17461 -11.00197 -10.92454 -10.86206 -10.75833 -10.60951 -10.49057 -10.10083 -10.05799 -9.86797 -9.84564 -9.46883 -9.38989 -9.10302 -8.38740 -8.34986 -6.54486 -5.70257 -3.20232 2.70244 2.93899 3.45273 3.52115 3.57603 3.80491 4.23152 4.33149 4.57180 4.57869 4.65893 4.86027 4.92514 5.00188 5.05343 5.10971 5.14566 5.26215 5.30328 5.39298 5.44703 5.46689 5.47939 5.55139 5.57840 5.67102 5.71210 5.73247 5.77130 5.83506 5.93330 5.95855 6.01704 6.06732 6.13197 6.14206 6.25241 6.37343 6.45252 6.59940 6.61354 6.71720 6.80299 6.84493 7.11435 7.21704 7.58442 7.71113 7.90456 8.34421 8.44410 8.63143 9.26410 9.91954 10.44274 11.32979 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.002850 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.363019 B = 9823.263973 C =10282.026233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.071 0.929 5 C -0.149 4.149 6 C -0.143 4.143 7 C 0.059 3.941 8 H 0.094 0.906 9 C 0.520 3.480 10 O -0.529 6.529 11 N -0.601 5.601 12 C 0.114 3.886 13 C -0.134 4.134 14 C 0.177 3.823 15 N -0.571 5.571 16 C -0.233 4.233 17 H 0.057 0.943 18 C 0.013 3.987 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.140 3.860 25 C 0.060 3.940 26 O -0.544 6.544 27 C -0.142 4.142 28 C 0.106 3.894 29 O -0.338 6.338 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.252 0.748 45 H 0.035 0.965 46 H 0.108 0.892 47 H 0.019 0.981 48 H 0.021 0.979 49 H 0.349 0.651 50 H 0.069 0.931 51 H 0.068 0.932 52 H 0.066 0.934 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -15.547 -11.712 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C 0.011 3.989 4 H 0.089 0.911 5 C -0.187 4.187 6 C -0.181 4.181 7 C -0.002 4.002 8 H 0.111 0.889 9 C 0.306 3.694 10 O -0.405 6.405 11 N -0.336 5.336 12 C -0.009 4.009 13 C -0.174 4.174 14 C 0.069 3.931 15 N -0.290 5.290 16 C -0.362 4.362 17 H 0.074 0.926 18 C -0.186 4.186 19 N -0.539 5.539 20 Si 0.726 3.274 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.014 3.986 25 C -0.020 4.020 26 O -0.345 6.345 27 C -0.182 4.182 28 C -0.017 4.017 29 O -0.257 6.257 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.126 0.874 47 H 0.037 0.963 48 H 0.039 0.961 49 H 0.191 0.809 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.084 0.916 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.619 -15.909 -10.462 20.159 hybrid contribution -0.012 0.934 -1.054 1.409 sum 6.607 -14.975 -11.517 20.014 Atomic orbital electron populations 1.21734 0.95132 1.01542 1.02551 1.21567 0.96968 0.94146 1.02609 1.23131 0.93618 0.94451 0.87687 0.91135 1.22999 0.96094 0.99140 1.00459 1.22957 0.96550 0.98330 1.00306 1.22830 0.90689 0.91656 0.95059 0.88863 1.20078 0.78987 0.80419 0.89909 1.90695 1.45003 1.55280 1.49490 1.48057 1.48435 1.27832 1.09249 1.21752 1.01179 0.96764 0.81176 1.22320 1.02410 0.91314 1.01380 1.20294 0.95399 0.85909 0.91450 1.43752 1.06829 0.98542 1.79876 1.18753 0.90225 1.13026 1.14227 0.92551 1.24934 0.97789 1.01279 0.94579 1.69956 1.43671 1.28655 1.11589 0.86410 0.82075 0.79559 0.79320 1.21826 1.21798 1.20488 1.21071 0.89805 0.96981 0.90775 1.23095 0.92406 0.92941 0.93591 1.86866 1.38893 1.77883 1.30823 1.22381 1.02834 0.92243 1.00710 1.21932 0.96112 0.93569 0.90106 1.89293 1.55049 1.41611 1.39713 0.92881 0.92793 0.91680 0.90751 0.91007 0.90332 0.90184 0.89439 0.90149 0.92136 0.89690 0.90914 0.91023 0.93522 0.93846 0.94699 0.87425 0.96319 0.96116 0.80878 0.91200 0.91346 0.91609 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.83 37.16 0.37 -1.00 16 2 C -0.12 -0.99 5.58 -26.73 -0.15 -1.14 16 3 C 0.07 0.68 3.27 -25.95 -0.08 0.59 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -1.18 6.63 -25.16 -0.17 -1.35 16 6 C -0.14 -1.33 5.69 -25.16 -0.14 -1.48 16 7 C 0.06 0.75 2.74 -27.11 -0.07 0.68 16 8 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 9 C 0.52 8.48 6.99 -10.99 -0.08 8.40 16 10 O -0.53 -10.80 15.97 -13.65 -0.22 -11.02 16 11 N -0.60 -9.04 2.97 -172.80 -0.51 -9.55 16 12 C 0.11 1.83 6.43 -3.72 -0.02 1.81 16 13 C -0.13 -2.56 5.31 -26.62 -0.14 -2.70 16 14 C 0.18 3.34 2.59 -67.89 -0.18 3.16 16 15 N -0.57 -13.17 2.35 -165.61 -0.39 -13.56 16 16 C -0.23 -6.13 8.06 -15.06 -0.12 -6.26 16 17 H 0.06 1.52 6.87 -52.49 -0.36 1.16 16 18 C 0.01 0.36 4.91 -17.43 -0.09 0.27 16 19 N -0.89 -25.57 11.34 55.49 0.63 -24.94 16 20 Si 0.90 22.35 29.61 -169.99 -5.03 17.32 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.14 3.14 5.57 -4.04 -0.02 3.12 16 25 C 0.06 1.12 7.39 37.16 0.27 1.40 16 26 O -0.54 -10.98 13.40 -35.23 -0.47 -11.45 16 27 C -0.14 -2.30 5.30 -26.64 -0.14 -2.44 16 28 C 0.11 1.33 5.81 -3.73 -0.02 1.31 16 29 O -0.34 -4.82 10.26 -54.43 -0.56 -5.38 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.59 7.88 -51.93 -0.41 0.19 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.63 7.04 -51.93 -0.37 0.26 16 38 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.48 7.01 -51.92 -0.36 1.11 16 41 H 0.07 1.49 8.14 -51.92 -0.42 1.06 16 42 H 0.07 1.58 7.71 -51.93 -0.40 1.18 16 43 H 0.05 0.82 7.87 -51.93 -0.41 0.41 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.03 0.73 8.04 -51.93 -0.42 0.31 16 46 H 0.11 2.85 5.34 -51.93 -0.28 2.57 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.35 5.05 9.12 45.56 0.42 5.47 16 50 H 0.07 1.31 7.03 -51.93 -0.37 0.95 16 51 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 52 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 53 H 0.07 0.77 4.60 -51.93 -0.24 0.53 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -33.54 407.04 -9.81 -43.36 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.60 Total: 4.72 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.79 Total: 4.37 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.27 Total: -48.05 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.25 Total: -27.85 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.54 -9.81 -43.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098383763.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.089 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds