Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99873 * 2 1 4 4 C 1.53007 * 109.46710 * 120.00062 * 3 2 1 5 5 O 1.42904 * 109.47212 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47268 * 239.99983 * 3 2 1 7 7 C 1.50701 * 109.47159 * 55.99829 * 6 3 2 8 8 O 1.21275 * 119.99965 * 2.82607 * 7 6 3 9 9 N 1.34780 * 119.99867 * 182.83571 * 7 6 3 10 10 C 1.46499 * 119.99597 * 175.56659 * 9 7 6 11 11 C 1.52992 * 109.46117 * 302.73120 * 10 9 7 12 12 C 1.53004 * 109.47392 * 304.68016 * 11 10 9 13 13 O 1.42894 * 109.47341 * 184.21207 * 12 11 10 14 14 C 1.42895 * 114.00119 * 179.97438 * 13 12 11 15 15 C 1.53048 * 109.45873 * 182.77190 * 10 9 7 16 16 C 1.53189 * 109.31230 * 301.34756 * 15 10 9 17 17 N 1.46931 * 108.77483 * 305.36257 * 16 15 10 18 18 C 1.36934 * 120.62833 * 233.63402 * 17 16 15 19 19 H 1.08000 * 120.00216 * 144.52666 * 18 17 16 20 20 C 1.38820 * 119.99957 * 324.52210 * 18 17 16 21 21 N 1.31623 * 119.99804 * 169.41962 * 20 18 17 22 22 Si 1.86798 * 120.00102 * 349.41653 * 20 18 17 23 23 H 1.48497 * 109.46700 * 85.93143 * 22 20 18 24 24 H 1.48500 * 109.47081 * 205.93120 * 22 20 18 25 25 H 1.48495 * 109.47140 * 325.93343 * 22 20 18 26 26 C 1.46920 * 118.73775 * 53.60962 * 17 16 15 27 27 C 1.53044 * 109.46219 * 62.70723 * 10 9 7 28 28 H 1.07998 * 119.99929 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99997 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99877 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46726 * 55.10560 * 4 3 2 32 32 H 1.08996 * 109.47010 * 295.10385 * 4 3 2 33 33 H 1.09001 * 109.46849 * 175.10974 * 4 3 2 34 34 H 0.96702 * 113.99078 * 299.99501 * 5 3 2 35 35 H 1.09009 * 109.47051 * 175.99395 * 6 3 2 36 36 H 1.08994 * 109.47659 * 295.99170 * 6 3 2 37 37 H 0.96999 * 120.00341 * 355.55852 * 9 7 6 38 38 H 1.09002 * 109.47412 * 64.68466 * 11 10 9 39 39 H 1.09006 * 109.47141 * 184.67981 * 11 10 9 40 40 H 1.08998 * 109.46927 * 304.21424 * 12 11 10 41 41 H 1.09004 * 109.46549 * 64.21647 * 12 11 10 42 42 H 1.09005 * 109.46846 * 60.00582 * 14 13 12 43 43 H 1.09003 * 109.47248 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47327 * 300.00191 * 14 13 12 45 45 H 1.09000 * 109.49562 * 61.29583 * 15 10 9 46 46 H 1.08992 * 109.49527 * 181.39062 * 15 10 9 47 47 H 1.09002 * 109.58554 * 185.57496 * 16 15 10 48 48 H 1.08998 * 109.58793 * 65.14946 * 16 15 10 49 49 H 0.96994 * 119.99813 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.58315 * 186.60651 * 26 17 16 51 51 H 1.09004 * 109.70547 * 66.25143 * 26 17 16 52 52 H 1.08999 * 109.49650 * 178.60572 * 27 10 9 53 53 H 1.08996 * 109.49684 * 298.70399 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9431 1.3862 -1.2492 7 6 2.0886 1.2079 -2.4777 8 8 0.8872 1.0844 -2.3679 9 7 2.6597 1.1854 -3.6983 10 6 1.8430 0.9153 -4.8841 11 6 1.1413 -0.4347 -4.7231 12 6 2.1827 -1.5211 -4.4467 13 8 1.5388 -2.7956 -4.3936 14 6 2.4273 -3.8855 -4.1396 15 6 2.7402 0.8786 -6.1235 16 6 3.4675 2.2197 -6.2623 17 7 2.4710 3.2994 -6.2705 18 6 2.4475 4.2193 -7.2845 19 1 1.5047 4.6129 -7.6348 20 6 3.6354 4.6461 -7.8623 21 7 3.6101 5.3639 -8.9653 22 14 5.2697 4.2018 -7.0743 23 1 5.7042 2.8659 -7.5555 24 1 6.2892 5.2166 -7.4432 25 1 5.1149 4.1698 -5.5978 26 6 1.5001 3.3730 -5.1703 27 6 0.7948 2.0190 -5.0436 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 3.5918 0.5113 1.2941 32 1 2.3114 1.4159 2.1371 33 1 3.5526 2.2888 1.2066 34 1 0.5433 2.4033 -0.7643 35 1 3.4334 2.3591 -1.2858 36 1 3.6975 0.6003 -1.2141 37 1 3.6114 1.3482 -3.7916 38 1 0.4404 -0.3828 -3.8899 39 1 0.6003 -0.6745 -5.6385 40 1 2.9264 -1.5225 -5.2435 41 1 2.6718 -1.3212 -3.4933 42 1 2.9220 -3.7349 -3.1800 43 1 1.8619 -4.8171 -4.1150 44 1 3.1759 -3.9360 -4.9303 45 1 3.4716 0.0772 -6.0195 46 1 2.1300 0.7022 -7.0092 47 1 4.0306 2.2351 -7.1955 48 1 4.1468 2.3558 -5.4209 49 1 4.4401 5.6624 -9.3687 50 1 0.7651 4.1493 -5.3829 51 1 2.0169 3.6043 -4.2388 52 1 0.2030 1.8318 -5.9396 53 1 0.1417 2.0292 -4.1711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151095792.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = -108.397379 kcal Electronic energy + Delta-G solvation = -32979.059815 eV Core-core repulsion = 28851.397094 eV Total energy + Delta-G solvation = -4127.662722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85839 -40.04191 -38.68681 -38.18679 -36.19613 -34.02456 -33.80939 -33.25444 -32.07448 -31.81324 -30.77602 -28.92663 -27.62738 -26.31916 -24.57865 -24.23518 -23.51351 -22.22162 -21.84695 -20.43890 -20.19058 -18.91781 -18.19180 -17.73189 -17.64351 -17.15619 -16.87434 -16.64382 -16.27887 -16.09750 -15.73977 -15.62949 -15.36546 -15.20982 -14.96535 -14.68538 -14.30810 -14.22843 -14.04721 -13.59287 -13.52086 -13.30488 -13.24619 -13.10219 -12.99824 -12.87091 -12.67317 -12.56807 -12.45793 -12.31394 -12.20568 -12.04990 -12.00703 -11.87436 -11.62783 -11.40034 -11.34052 -10.98761 -10.77930 -10.61396 -10.49012 -9.99756 -9.80925 -8.78284 -8.14802 -5.59340 1.30202 1.42612 1.52769 1.53780 1.77666 2.25499 2.42933 2.80628 3.13540 3.31668 3.38909 3.61931 3.81015 3.86320 3.90890 3.97153 4.05417 4.16723 4.30579 4.32401 4.40418 4.45012 4.48424 4.49876 4.52935 4.55698 4.62594 4.66310 4.71465 4.74406 4.83028 4.90940 4.92337 4.96331 4.98154 5.01448 5.07615 5.13980 5.18925 5.20319 5.27751 5.31332 5.35918 5.69237 5.78495 5.93356 6.00343 6.15717 6.25717 6.67758 6.78447 6.95204 7.39171 7.61240 8.04326 9.05317 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.004251 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.486915 B = 6585.201818 C = 7967.205054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.172 3.828 4 C -0.133 4.133 5 O -0.577 6.577 6 C -0.165 4.165 7 C 0.515 3.485 8 O -0.551 6.551 9 N -0.713 5.713 10 C 0.205 3.795 11 C -0.117 4.117 12 C 0.073 3.927 13 O -0.418 6.418 14 C 0.026 3.974 15 C -0.132 4.132 16 C 0.118 3.882 17 N -0.616 5.616 18 C -0.254 4.254 19 H 0.037 0.963 20 C -0.036 4.036 21 N -0.966 5.966 22 Si 0.963 3.037 23 H -0.263 1.263 24 H -0.317 1.317 25 H -0.253 1.253 26 C 0.157 3.843 27 C -0.130 4.130 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.383 0.617 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.407 0.593 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.262 0.738 50 H 0.039 0.961 51 H 0.030 0.970 52 H 0.054 0.946 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.819 -18.087 18.861 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C 0.131 3.869 4 C -0.190 4.190 5 O -0.387 6.387 6 C -0.204 4.204 7 C 0.303 3.697 8 O -0.430 6.430 9 N -0.366 5.366 10 C 0.119 3.881 11 C -0.156 4.156 12 C -0.003 4.003 13 O -0.338 6.338 14 C -0.070 4.070 15 C -0.171 4.171 16 C -0.006 4.006 17 N -0.341 5.341 18 C -0.384 4.384 19 H 0.055 0.945 20 C -0.230 4.230 21 N -0.612 5.612 22 Si 0.791 3.209 23 H -0.188 1.188 24 H -0.246 1.246 25 H -0.177 1.177 26 C 0.032 3.968 27 C -0.170 4.170 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.235 0.765 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.243 0.757 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.068 0.932 45 H 0.112 0.888 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.058 0.942 51 H 0.048 0.952 52 H 0.072 0.928 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.142 -17.989 19.352 26.508 hybrid contribution 0.783 0.421 -1.156 1.458 sum 2.924 -17.568 18.197 25.462 Atomic orbital electron populations 1.23610 0.96513 1.01273 0.98605 1.23363 0.96601 0.98288 1.02018 1.20015 0.88025 0.84578 0.94303 1.21740 0.98659 1.03649 0.94951 1.86430 1.51405 1.49852 1.51030 1.22483 0.99791 1.06513 0.91650 1.20902 0.88890 0.75045 0.84844 1.90595 1.15767 1.50084 1.86530 1.46151 1.12572 1.72268 1.05609 1.19894 0.90681 0.93001 0.84535 1.21756 0.98643 0.91989 1.03168 1.22477 0.94990 0.82506 1.00372 1.87841 1.36554 1.16127 1.93256 1.22900 0.94493 0.89476 1.00099 1.22298 0.99660 0.97987 0.97132 1.21486 0.91857 0.87857 0.99428 1.44343 1.36924 1.29008 1.23812 1.18769 0.92348 1.17318 1.09939 0.94481 1.26234 1.02014 0.97210 0.97554 1.69931 1.28099 1.41801 1.21338 0.85713 0.78627 0.76661 0.79917 1.18846 1.24608 1.17659 1.20876 0.91129 0.95468 0.89296 1.22224 0.97896 0.95132 1.01768 0.88650 0.89328 0.86235 0.88789 0.92312 0.91425 0.76516 0.87372 0.85333 0.75718 0.90425 0.91422 0.92430 0.92940 0.93242 0.88737 0.93247 0.88771 0.91213 0.92829 0.93921 0.92948 0.94203 0.95203 0.92773 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 12.58 67.78 0.85 -2.70 16 2 C -0.18 -3.53 7.39 25.65 0.19 -3.34 16 3 C 0.17 3.19 1.08 -11.54 -0.01 3.17 16 4 C -0.13 -1.90 8.82 71.98 0.64 -1.26 16 5 O -0.58 -14.19 11.94 -133.34 -1.59 -15.78 16 6 C -0.16 -2.62 4.99 29.85 0.15 -2.47 16 7 C 0.52 11.14 6.37 87.66 0.56 11.70 16 8 O -0.55 -14.43 8.21 12.63 0.10 -14.33 16 9 N -0.71 -15.62 3.32 -422.80 -1.40 -17.02 16 10 C 0.21 5.42 0.35 3.63 0.00 5.42 16 11 C -0.12 -2.96 4.29 30.59 0.13 -2.83 16 12 C 0.07 1.55 5.49 71.98 0.40 1.95 16 13 O -0.42 -9.82 10.70 -148.98 -1.59 -11.42 16 14 C 0.03 0.41 11.01 113.37 1.25 1.66 16 15 C -0.13 -3.75 4.75 30.67 0.15 -3.61 16 16 C 0.12 4.35 3.88 86.36 0.34 4.69 16 17 N -0.62 -27.51 2.70 -699.09 -1.88 -29.39 16 18 C -0.25 -14.28 10.03 84.04 0.84 -13.44 16 19 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 20 C -0.04 -2.04 5.35 84.86 0.45 -1.59 16 21 N -0.97 -60.51 13.97 21.65 0.30 -60.20 16 22 Si 0.96 44.16 24.28 68.60 1.67 45.82 16 23 H -0.26 -10.92 6.49 99.48 0.65 -10.28 16 24 H -0.32 -15.12 7.11 99.48 0.71 -14.41 16 25 H -0.25 -10.65 6.58 99.48 0.65 -10.00 16 26 C 0.16 6.09 6.26 86.36 0.54 6.63 16 27 C -0.13 -4.23 4.71 30.67 0.14 -4.09 16 28 H 0.10 1.92 8.06 -2.91 -0.02 1.89 16 29 H 0.09 2.14 6.41 -2.91 -0.02 2.12 16 30 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.38 9.88 5.86 -74.06 -0.43 9.45 16 35 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.41 7.68 7.19 -92.71 -0.67 7.01 16 38 H 0.08 2.24 6.27 -2.39 -0.01 2.22 16 39 H 0.07 1.81 8.14 -2.38 -0.02 1.80 16 40 H 0.06 1.12 6.33 -2.39 -0.02 1.10 16 41 H 0.05 1.02 7.32 -2.39 -0.02 1.00 16 42 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 2.08 6.41 -2.39 -0.02 2.06 16 46 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.05 2.22 4.73 -2.39 -0.01 2.21 16 48 H 0.04 1.41 5.60 -2.39 -0.01 1.40 16 49 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 50 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 51 H 0.03 1.11 7.74 -2.38 -0.02 1.09 16 52 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.08 2.64 6.26 -2.39 -0.01 2.62 16 Total: -1.00 -70.29 392.77 1.90 -68.38 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.31 Total: 34.05 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.61 Total: -0.11 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -2.99 Total: -106.62 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -3.08 Total: -41.53 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.67 Total: 45.82 kcal Total: -70.29 1.90 -68.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151095792.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.015 kcal (2) G-P(sol) polarization free energy of solvation -70.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds