Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99944 * 2 1 4 4 C 1.53001 * 109.46966 * 239.99673 * 3 2 1 5 5 O 1.42901 * 109.46912 * 359.97438 * 3 2 1 6 6 C 1.52991 * 109.47271 * 119.99576 * 3 2 1 7 7 C 1.50712 * 109.46861 * 179.97438 * 6 3 2 8 8 O 1.21273 * 120.00124 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99549 * 180.27302 * 7 6 3 10 10 C 1.46498 * 119.99644 * 174.75300 * 9 7 6 11 11 C 1.52995 * 109.46175 * 303.01522 * 10 9 7 12 12 C 1.53001 * 109.47002 * 303.05499 * 11 10 9 13 13 O 1.42898 * 109.47157 * 184.39637 * 12 11 10 14 14 C 1.42897 * 113.99997 * 180.02562 * 13 12 11 15 15 C 1.53047 * 109.46101 * 183.05213 * 10 9 7 16 16 C 1.53191 * 109.31047 * 301.34830 * 15 10 9 17 17 N 1.46925 * 108.77618 * 305.36155 * 16 15 10 18 18 C 1.36938 * 120.63222 * 233.63126 * 17 16 15 19 19 H 1.08003 * 119.99364 * 31.76567 * 18 17 16 20 20 C 1.38808 * 120.00162 * 211.76501 * 18 17 16 21 21 N 1.31613 * 120.00076 * 10.84423 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 190.84249 * 20 18 17 23 23 H 1.48506 * 109.46877 * 60.00386 * 22 20 18 24 24 H 1.48500 * 109.47482 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47558 * 300.00246 * 22 20 18 26 26 C 1.46920 * 118.73806 * 53.61189 * 17 16 15 27 27 C 1.53042 * 109.45700 * 62.98916 * 10 9 7 28 28 H 1.08003 * 119.99846 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99812 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.00071 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46785 * 299.99954 * 4 3 2 32 32 H 1.09004 * 109.47202 * 59.99533 * 4 3 2 33 33 H 1.09001 * 109.47339 * 179.97438 * 4 3 2 34 34 H 0.96701 * 114.00327 * 60.00839 * 5 3 2 35 35 H 1.08997 * 109.47396 * 60.00331 * 6 3 2 36 36 H 1.09002 * 109.47430 * 299.99409 * 6 3 2 37 37 H 0.97004 * 120.00405 * 354.76052 * 9 7 6 38 38 H 1.08991 * 109.47454 * 63.05409 * 11 10 9 39 39 H 1.09005 * 109.47123 * 183.05639 * 11 10 9 40 40 H 1.09009 * 109.47343 * 304.39150 * 12 11 10 41 41 H 1.08998 * 109.47071 * 64.39301 * 12 11 10 42 42 H 1.08994 * 109.47472 * 299.99701 * 14 13 12 43 43 H 1.09003 * 109.47463 * 59.99730 * 14 13 12 44 44 H 1.09006 * 109.47181 * 179.97438 * 14 13 12 45 45 H 1.08997 * 109.49120 * 61.29599 * 15 10 9 46 46 H 1.08997 * 109.49807 * 181.39824 * 15 10 9 47 47 H 1.08998 * 109.58606 * 185.57426 * 16 15 10 48 48 H 1.09002 * 109.58620 * 65.15219 * 16 15 10 49 49 H 0.97002 * 120.00514 * 179.97438 * 21 20 18 50 50 H 1.09007 * 109.58898 * 186.60090 * 26 17 16 51 51 H 1.09003 * 109.70640 * 66.25283 * 26 17 16 52 52 H 1.09003 * 109.49564 * 178.60921 * 27 10 9 53 53 H 1.09005 * 109.49782 * 298.69629 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1348 2.3912 -0.0006 6 6 2.9430 1.3862 1.2492 7 6 3.6970 2.6912 1.2488 8 8 3.5454 3.4788 0.3392 9 7 4.5435 2.9806 2.2568 10 6 5.3621 4.1943 2.2003 11 6 6.2073 4.1801 0.9251 12 6 7.0623 2.9116 0.8941 13 8 7.9259 2.9470 -0.2438 14 6 8.7716 1.8018 -0.3675 15 6 6.2829 4.2456 3.4216 16 6 5.4346 4.2249 4.6970 17 7 4.4566 5.3195 4.6322 18 6 4.3626 6.2322 5.6488 19 1 5.2417 6.5018 6.2154 20 6 3.1376 6.8107 5.9511 21 7 2.0344 6.3343 5.4140 22 14 3.0546 8.2654 7.1201 23 1 3.8559 9.3884 6.5703 24 1 1.6419 8.6956 7.2756 25 1 3.6004 7.8691 8.4431 26 6 3.5818 5.4166 3.4559 27 6 4.4509 5.4238 2.1944 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 3.6515 0.5576 -1.2491 32 1 2.3165 1.3282 -2.1393 33 1 3.4879 2.3303 -1.2495 34 1 0.5433 2.4034 0.7643 35 1 3.6514 0.5578 1.2493 36 1 2.3163 1.3286 2.1392 37 1 4.6109 2.3852 3.0197 38 1 5.5519 4.1977 0.0545 39 1 6.8560 5.0559 0.9094 40 1 7.6613 2.8548 1.8031 41 1 6.4138 2.0378 0.8311 42 1 9.4059 1.7214 0.5152 43 1 8.1583 0.9051 -0.4569 44 1 9.3954 1.9049 -1.2554 45 1 6.9474 3.3816 3.4126 46 1 6.8745 5.1606 3.3930 47 1 6.0781 4.3608 5.5662 48 1 4.9115 3.2716 4.7725 49 1 1.1783 6.7383 5.6255 50 1 3.0029 6.3388 3.5061 51 1 2.9058 4.5619 3.4290 52 1 5.0598 6.3278 2.1773 53 1 3.8115 5.3987 1.3119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151095793.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -86.579942 kcal Electronic energy + Delta-G solvation = -32646.573349 eV Core-core repulsion = 28519.856702 eV Total energy + Delta-G solvation = -4126.716647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.45602 -38.78175 -37.64235 -36.88534 -34.49205 -32.99954 -32.17498 -31.52101 -30.99772 -30.06544 -28.91985 -27.71138 -26.52738 -24.81776 -23.14121 -22.97486 -22.04268 -20.76790 -20.12681 -19.65263 -18.59694 -17.37634 -16.87010 -16.38327 -16.25266 -15.95101 -15.69970 -15.13772 -15.00860 -14.83718 -14.51077 -14.14647 -13.86699 -13.57221 -13.38044 -13.27752 -13.07280 -12.90128 -12.63436 -12.31447 -12.28046 -12.13969 -11.74016 -11.60380 -11.52201 -11.41943 -11.35747 -11.07784 -11.03906 -10.96668 -10.82140 -10.71056 -10.37527 -10.23258 -10.12801 -9.96955 -9.73898 -9.64653 -9.54366 -9.41830 -8.88056 -8.48309 -8.45461 -6.59735 -5.77215 -3.25980 2.06954 3.04460 3.38027 3.43994 3.44641 3.51388 3.79524 4.30523 4.48977 4.65358 4.74255 4.96775 5.04520 5.11226 5.12002 5.19960 5.26661 5.33932 5.36683 5.41307 5.46457 5.49912 5.52897 5.54846 5.65009 5.67061 5.67276 5.81458 5.88355 6.02440 6.06743 6.15704 6.21005 6.33900 6.39204 6.42494 6.49571 6.54630 6.61558 6.66394 6.73387 6.86367 6.94520 7.14601 7.19678 7.45702 7.75122 7.77783 7.80912 7.96603 8.49110 8.69410 9.23750 9.84993 10.43117 11.30161 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009254 B = 0.004167 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.051681 B = 6718.352664 C = 9097.685999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.187 4.187 3 C 0.179 3.821 4 C -0.145 4.145 5 O -0.536 6.536 6 C -0.168 4.168 7 C 0.517 3.483 8 O -0.513 6.513 9 N -0.717 5.717 10 C 0.196 3.804 11 C -0.129 4.129 12 C 0.067 3.933 13 O -0.393 6.393 14 C 0.033 3.967 15 C -0.141 4.141 16 C 0.147 3.853 17 N -0.590 5.590 18 C -0.256 4.256 19 H 0.062 0.938 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.182 3.818 27 C -0.150 4.150 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.370 0.630 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.395 0.605 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.013 0.987 49 H 0.254 0.746 50 H 0.083 0.917 51 H 0.017 0.983 52 H 0.057 0.943 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -15.030 -9.792 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.205 4.205 3 C 0.138 3.862 4 C -0.202 4.202 5 O -0.341 6.341 6 C -0.209 4.209 7 C 0.302 3.698 8 O -0.388 6.388 9 N -0.369 5.369 10 C 0.111 3.889 11 C -0.167 4.167 12 C -0.009 4.009 13 O -0.312 6.312 14 C -0.064 4.064 15 C -0.180 4.180 16 C 0.020 3.980 17 N -0.313 5.313 18 C -0.386 4.386 19 H 0.080 0.920 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.056 3.944 27 C -0.189 4.189 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.218 0.782 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.230 0.770 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.031 0.969 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.035 0.965 52 H 0.076 0.924 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.418 -14.092 -11.106 18.743 hybrid contribution -0.338 -0.227 1.888 1.932 sum 5.080 -14.320 -9.218 17.771 Atomic orbital electron populations 1.23872 0.96091 1.02360 0.99574 1.23639 0.96768 0.98869 1.01246 1.19790 0.88052 0.83946 0.94460 1.21925 0.98753 1.04289 0.95250 1.86717 1.50009 1.48718 1.48670 1.22407 1.00485 0.97275 1.00687 1.20179 0.79288 0.87926 0.82370 1.90612 1.63228 1.49147 1.35848 1.46149 1.42429 1.25778 1.22538 1.20147 0.90032 0.85399 0.93357 1.21973 0.97973 0.96640 1.00126 1.22597 0.91753 0.98955 0.87611 1.87888 1.53869 1.42028 1.47386 1.22684 0.93753 0.88565 1.01393 1.22416 0.97760 1.01593 0.96276 1.20855 0.91633 0.91341 0.94155 1.44013 1.40573 1.27985 1.18738 1.19105 0.92566 1.16555 1.10400 0.92034 1.25148 0.95343 1.00010 0.98680 1.69967 0.97218 1.41174 1.46244 0.86372 0.76631 0.82774 0.80930 1.20969 1.21624 1.20929 1.20650 0.90373 1.01266 0.82065 1.22586 0.99396 0.95057 1.01907 0.87586 0.88425 0.86941 0.92356 0.92504 0.88450 0.78237 0.88726 0.88814 0.77027 0.89166 0.90826 0.93376 0.93903 0.94323 0.94453 0.89973 0.92658 0.90668 0.92701 0.96939 0.93594 0.89865 0.96530 0.92400 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 13.93 29.01 0.40 -1.29 16 2 C -0.19 -1.82 8.77 -36.03 -0.32 -2.13 16 3 C 0.18 2.13 0.94 -91.78 -0.09 2.04 16 4 C -0.15 -1.81 8.50 37.16 0.32 -1.49 16 5 O -0.54 -7.59 10.85 -53.48 -0.58 -8.17 16 6 C -0.17 -1.90 4.94 -27.88 -0.14 -2.04 16 7 C 0.52 7.63 6.56 -10.98 -0.07 7.55 16 8 O -0.51 -9.16 9.23 -12.68 -0.12 -9.28 16 9 N -0.72 -10.36 3.36 -47.57 -0.16 -10.52 16 10 C 0.20 3.17 0.35 -131.78 -0.05 3.12 16 11 C -0.13 -1.97 4.32 -26.73 -0.12 -2.09 16 12 C 0.07 0.89 5.50 37.16 0.20 1.09 16 13 O -0.39 -5.44 10.70 -35.23 -0.38 -5.82 16 14 C 0.03 0.32 11.01 101.05 1.11 1.44 16 15 C -0.14 -2.23 4.72 -26.61 -0.13 -2.36 16 16 C 0.15 2.82 6.24 -3.71 -0.02 2.80 16 17 N -0.59 -14.19 2.98 -172.32 -0.51 -14.71 16 18 C -0.26 -6.90 9.57 -15.06 -0.14 -7.04 16 19 H 0.06 1.63 7.85 -52.48 -0.41 1.21 16 20 C 0.01 0.20 5.04 -17.43 -0.09 0.11 16 21 N -0.90 -25.93 11.09 55.49 0.62 -25.31 16 22 Si 0.90 21.58 29.57 -169.99 -5.03 16.56 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.18 4.32 4.99 -3.72 -0.02 4.30 16 27 C -0.15 -2.99 4.71 -26.61 -0.13 -3.12 16 28 H 0.11 1.02 6.41 -52.48 -0.34 0.68 16 29 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.11 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.49 5.51 -51.93 -0.29 1.20 16 34 H 0.37 4.31 8.05 45.56 0.37 4.68 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 5.14 7.18 -40.82 -0.29 4.85 16 38 H 0.09 1.57 6.22 -51.93 -0.32 1.25 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.59 6.27 -51.92 -0.33 0.27 16 41 H 0.04 0.55 7.46 -51.93 -0.39 0.16 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.73 6.35 -51.93 -0.33 0.40 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.01 0.24 6.88 -51.93 -0.36 -0.12 16 49 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.08 2.29 6.14 -51.93 -0.32 1.97 16 51 H 0.02 0.42 7.74 -51.93 -0.40 0.01 16 52 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 53 H 0.07 1.56 6.26 -51.93 -0.32 1.24 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -31.89 401.30 -7.72 -39.61 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -8.35 Total: 10.69 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 0.74 Total: 0.90 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.06 Total: -50.54 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.07 Total: -23.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.89 -7.72 -39.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151095793.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.972 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds