Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47100 * 2 1 4 4 C 1.53001 * 109.46809 * 240.00202 * 2 1 3 5 5 O 1.45196 * 109.47685 * 120.00190 * 2 1 3 6 6 C 1.34635 * 116.99761 * 59.99469 * 5 2 1 7 7 O 1.21507 * 120.00261 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99841 * 180.02562 * 6 5 2 9 9 C 1.47074 * 125.63009 * 359.97438 * 8 6 5 10 10 C 1.54457 * 107.29526 * 179.03305 * 9 8 6 11 11 C 1.54402 * 102.87687 * 338.49283 * 10 9 8 12 12 C 1.47573 * 125.62567 * 180.02562 * 8 6 5 13 13 C 1.52170 * 110.43940 * 152.52571 * 11 10 9 14 14 N 1.47169 * 109.40373 * 177.73372 * 13 11 10 15 15 C 1.46902 * 110.99731 * 179.21507 * 14 13 11 16 16 C 1.52999 * 109.47036 * 57.44371 * 15 14 13 17 17 C 1.50701 * 109.46764 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00372 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99787 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99814 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46957 * 60.00324 * 21 19 17 23 23 H 1.48502 * 109.46695 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47059 * 300.00367 * 21 19 17 25 25 C 1.47029 * 110.63832 * 302.91069 * 14 13 11 26 26 C 1.53099 * 109.36391 * 59.37056 * 25 14 13 27 27 O 1.41957 * 110.62842 * 276.46262 * 11 10 9 28 28 H 1.09005 * 109.46851 * 299.99763 * 1 2 3 29 29 H 1.09003 * 109.47157 * 59.99814 * 1 2 3 30 30 H 1.08996 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46752 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46620 * 300.00340 * 3 2 1 33 33 H 1.08994 * 109.46747 * 60.00111 * 3 2 1 34 34 H 1.08999 * 109.47561 * 299.99462 * 4 2 1 35 35 H 1.09003 * 109.47274 * 60.00056 * 4 2 1 36 36 H 1.09003 * 109.47172 * 179.97438 * 4 2 1 37 37 H 1.08995 * 109.87907 * 59.61188 * 9 8 6 38 38 H 1.08994 * 109.88346 * 298.45635 * 9 8 6 39 39 H 1.08998 * 110.73630 * 96.83516 * 10 9 8 40 40 H 1.08996 * 110.73346 * 220.14584 * 10 9 8 41 41 H 1.08998 * 110.37911 * 322.13856 * 12 8 6 42 42 H 1.09011 * 110.37261 * 84.37362 * 12 8 6 43 43 H 1.09000 * 109.47998 * 297.71000 * 13 11 10 44 44 H 1.08994 * 109.48647 * 57.75239 * 13 11 10 45 45 H 1.08997 * 109.46922 * 177.44346 * 15 14 13 46 46 H 1.08993 * 109.47276 * 297.44229 * 15 14 13 47 47 H 1.08997 * 109.47245 * 299.99777 * 16 15 14 48 48 H 1.09006 * 109.47303 * 60.00463 * 16 15 14 49 49 H 0.96996 * 119.99536 * 179.97438 * 20 19 17 50 50 H 1.08999 * 109.49331 * 299.40035 * 25 14 13 51 51 H 1.09003 * 109.50451 * 179.34945 * 25 14 13 52 52 H 1.09003 * 109.52271 * 182.47083 * 26 25 14 53 53 H 1.08999 * 109.52717 * 62.28339 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9516 -2.5096 0.5036 8 7 2.0674 -2.6654 2.4170 9 6 2.9152 -2.1408 3.4983 10 6 3.1091 -3.2798 4.5235 11 6 1.9114 -4.2104 4.2345 12 6 1.7471 -4.0764 2.7077 13 6 2.2495 -5.6449 4.6134 14 7 1.0760 -6.5018 4.3801 15 6 1.3704 -7.9009 4.7177 16 6 1.8243 -7.9889 6.1761 17 6 2.1257 -9.4242 6.5226 18 1 2.0059 -10.1964 5.7770 19 6 2.5554 -9.7516 7.7912 20 7 2.7018 -8.8113 8.6989 21 14 2.9296 -11.5307 8.2205 22 1 4.0083 -12.0372 7.3345 23 1 3.3701 -11.6161 9.6361 24 1 1.7075 -12.3529 8.0323 25 6 -0.0839 -6.0097 5.1378 26 6 -0.4041 -4.5773 4.7024 27 8 0.7491 -3.7540 4.9097 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 2.4247 -1.2924 3.9754 38 1 3.8813 -1.8353 3.0968 39 1 4.0516 -3.7989 4.3499 40 1 3.0613 -2.8945 5.5419 41 1 0.7213 -4.3007 2.4152 42 1 2.4419 -4.7377 2.1898 43 1 3.0824 -5.9952 4.0038 44 1 2.5267 -5.6870 5.6666 45 1 0.4734 -8.5045 4.5793 46 1 2.1623 -8.2726 4.0676 47 1 2.7213 -7.3853 6.3145 48 1 1.0323 -7.6172 6.8263 49 1 3.0037 -9.0416 9.5914 50 1 0.1453 -6.0233 6.2033 51 1 -0.9443 -6.6500 4.9428 52 1 -1.2360 -4.1942 5.2934 53 1 -0.6724 -4.5690 3.6459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177050557.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -136.515701 kcal Electronic energy + Delta-G solvation = -31600.778613 eV Core-core repulsion = 27471.896589 eV Total energy + Delta-G solvation = -4128.882024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.09723 -41.26661 -38.88143 -37.65438 -36.92620 -35.04404 -34.96144 -33.12058 -31.73618 -30.60073 -29.15766 -28.34795 -28.26885 -27.36045 -25.52566 -24.99149 -23.67147 -22.67610 -21.85121 -20.49702 -20.16562 -19.08401 -18.61434 -17.96392 -17.50127 -17.27502 -16.97179 -16.54889 -16.27772 -16.03234 -15.80647 -15.69092 -15.41945 -15.05248 -14.78224 -14.70350 -14.55163 -14.19051 -14.02583 -13.78672 -13.41121 -13.32216 -13.20519 -13.05729 -12.91309 -12.84849 -12.84615 -12.76181 -12.66178 -12.51570 -12.48696 -12.33402 -12.25740 -12.17113 -11.95955 -11.56974 -11.50387 -11.37907 -11.16806 -11.11121 -10.68045 -10.54766 -9.77332 -9.20794 -8.21540 -6.33050 1.03802 1.39467 1.41599 1.49523 1.73211 2.39000 2.60703 2.82409 2.96650 3.11314 3.43878 3.49930 3.74580 3.77847 3.82067 3.96805 3.99465 4.12092 4.20607 4.21434 4.33261 4.45432 4.50526 4.52228 4.57281 4.63243 4.64429 4.70779 4.72781 4.77892 4.78151 4.81462 4.85646 4.86421 4.89921 4.93557 4.99475 5.02472 5.10205 5.11210 5.19776 5.29970 5.36328 5.46442 5.46608 5.54321 5.70412 5.94621 6.06500 6.16629 6.28734 6.40155 6.83934 7.24000 7.36230 8.89051 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.002212 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.675739 B =12655.982168 C =12753.949692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.364 6.364 6 C 0.663 3.337 7 O -0.594 6.594 8 N -0.603 5.603 9 C 0.113 3.887 10 C -0.114 4.114 11 C 0.113 3.887 12 C 0.121 3.879 13 C 0.038 3.962 14 N -0.531 5.531 15 C 0.071 3.929 16 C 0.003 3.997 17 C -0.541 4.541 18 H 0.062 0.938 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.015 3.985 26 C 0.068 3.932 27 O -0.376 6.376 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.071 0.929 47 H -0.002 1.002 48 H -0.011 1.011 49 H 0.263 0.737 50 H 0.025 0.975 51 H 0.091 0.909 52 H 0.117 0.883 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 20.657 -15.986 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.278 6.278 6 C 0.419 3.581 7 O -0.486 6.486 8 N -0.344 5.344 9 C -0.009 4.009 10 C -0.152 4.152 11 C 0.072 3.928 12 C -0.001 4.001 13 C -0.091 4.091 14 N -0.255 5.255 15 C -0.057 4.057 16 C -0.036 4.036 17 C -0.580 4.580 18 H 0.080 0.920 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.113 4.113 26 C -0.008 4.008 27 O -0.294 6.294 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.054 0.946 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.016 0.984 48 H 0.007 0.993 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.109 0.891 52 H 0.134 0.866 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.968 20.849 -16.594 26.664 hybrid contribution 0.168 -1.532 1.460 2.123 sum -0.800 19.316 -15.134 24.552 Atomic orbital electron populations 1.22466 0.94174 1.03453 1.03538 1.22462 0.94536 0.92864 0.81529 1.21870 1.02480 0.90371 1.04323 1.22463 1.01649 1.02077 0.97378 1.86320 1.71487 1.22571 1.47459 1.17621 0.78531 0.80807 0.81163 1.90887 1.42598 1.71198 1.43890 1.47259 1.53097 1.12645 1.21403 1.22141 0.95077 0.96951 0.86705 1.22706 0.96573 0.95139 1.00818 1.21939 0.87529 0.93223 0.90102 1.22533 1.02350 0.79697 0.95501 1.22494 0.94422 0.91734 1.00468 1.62790 1.04813 1.02831 1.55026 1.22109 1.00556 0.87554 0.95436 1.19505 0.94803 0.95870 0.93394 1.21574 1.44792 0.94487 0.97135 0.92019 1.25947 0.95305 1.01896 0.96500 1.70087 1.47785 1.34748 1.04497 0.85535 0.79000 0.79618 0.77111 1.19079 1.21070 1.19317 1.22781 0.95006 0.97556 0.95986 1.22811 0.88109 0.88456 1.01443 1.87813 1.18798 1.51311 1.71510 0.92177 0.88883 0.92350 0.91075 0.87835 0.91301 0.92290 0.88945 0.91875 0.90693 0.89029 0.86932 0.88027 0.90905 0.89601 0.88592 0.94583 0.91496 0.91100 0.98385 0.99286 0.92858 0.95709 0.89073 0.86559 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 8.37 71.98 0.60 -2.74 16 2 C 0.12 2.25 1.13 -10.79 -0.01 2.23 16 3 C -0.13 -1.51 8.85 71.99 0.64 -0.87 16 4 C -0.18 -3.21 8.37 71.98 0.60 -2.61 16 5 O -0.36 -8.65 9.49 -55.44 -0.53 -9.17 16 6 C 0.66 18.62 7.93 129.79 1.03 19.65 16 7 O -0.59 -19.41 12.15 19.82 0.24 -19.17 16 8 N -0.60 -15.48 3.33 -942.84 -3.14 -18.62 16 9 C 0.11 2.26 6.90 86.76 0.60 2.85 16 10 C -0.11 -2.38 6.12 31.57 0.19 -2.18 16 11 C 0.11 3.05 0.82 -10.20 -0.01 3.04 16 12 C 0.12 3.24 5.81 86.56 0.50 3.74 16 13 C 0.04 1.20 3.83 85.98 0.33 1.53 16 14 N -0.53 -18.23 4.82 -896.64 -4.32 -22.56 16 15 C 0.07 2.85 5.32 86.30 0.46 3.30 16 16 C 0.00 0.13 4.26 29.85 0.13 0.26 16 17 C -0.54 -30.03 9.11 25.60 0.23 -29.79 16 18 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 19 C 0.00 0.09 5.46 84.66 0.46 0.55 16 20 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 21 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 C 0.02 0.50 5.29 86.31 0.46 0.95 16 26 C 0.07 1.88 6.80 72.02 0.49 2.37 16 27 O -0.38 -11.18 10.33 -148.96 -1.54 -12.72 16 28 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.47 5.88 -2.39 -0.01 1.46 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 39 H 0.11 1.96 8.00 -2.39 -0.02 1.94 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.21 6.26 -2.39 -0.01 2.19 16 42 H 0.09 2.22 7.89 -2.38 -0.02 2.20 16 43 H 0.10 2.81 7.99 -2.39 -0.02 2.79 16 44 H 0.04 1.38 6.31 -2.39 -0.02 1.36 16 45 H 0.07 2.64 8.10 -2.39 -0.02 2.62 16 46 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.00 -0.12 6.38 -2.39 -0.02 -0.13 16 48 H -0.01 -0.62 6.62 -2.38 -0.02 -0.64 16 49 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 50 H 0.02 0.96 6.62 -2.39 -0.02 0.95 16 51 H 0.09 2.78 8.11 -2.39 -0.02 2.76 16 52 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 53 H 0.06 1.67 6.53 -2.39 -0.02 1.65 16 Total: -1.00 -69.36 402.97 0.60 -68.76 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.88 Total: 21.11 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.70 Total: 2.30 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -7.18 Total: -96.78 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.82 Total: -41.07 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.36 0.60 -68.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177050557.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.759 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds