Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 C 1.53000 * 109.47205 * 239.99719 * 2 1 3 5 5 O 1.45206 * 109.46821 * 120.00008 * 2 1 3 6 6 C 1.34635 * 117.00152 * 59.99953 * 5 2 1 7 7 O 1.21507 * 119.99982 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99734 * 180.02562 * 6 5 2 9 9 C 1.47484 * 125.66423 * 0.02562 * 8 6 5 10 10 C 1.55024 * 104.89396 * 203.99588 * 9 8 6 11 11 C 1.54523 * 101.53034 * 323.61001 * 10 9 8 12 12 C 1.47192 * 125.66142 * 179.97438 * 8 6 5 13 13 C 1.52339 * 110.12335 * 276.47643 * 11 10 9 14 14 N 1.47155 * 109.31788 * 292.42740 * 13 11 10 15 15 C 1.46896 * 110.99645 * 178.93582 * 14 13 11 16 16 C 1.53002 * 109.46899 * 169.99940 * 15 14 13 17 17 C 1.50703 * 109.47207 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99603 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99776 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99769 * 21 19 17 25 25 C 1.47024 * 110.65321 * 302.63970 * 14 13 11 26 26 C 1.53100 * 109.40155 * 59.19075 * 25 14 13 27 27 O 1.42145 * 110.25247 * 153.49163 * 11 10 9 28 28 H 1.08997 * 109.47415 * 300.00487 * 1 2 3 29 29 H 1.09006 * 109.46928 * 60.00508 * 1 2 3 30 30 H 1.09003 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47045 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46712 * 299.99624 * 3 2 1 33 33 H 1.08997 * 109.47281 * 59.99432 * 3 2 1 34 34 H 1.09004 * 109.46769 * 299.99975 * 4 2 1 35 35 H 1.08992 * 109.47483 * 59.99876 * 4 2 1 36 36 H 1.08999 * 109.47060 * 180.02562 * 4 2 1 37 37 H 1.08998 * 110.35575 * 322.84807 * 9 8 6 38 38 H 1.08991 * 110.35615 * 85.03528 * 9 8 6 39 39 H 1.08999 * 111.01043 * 205.55139 * 10 9 8 40 40 H 1.08999 * 111.01551 * 81.67635 * 10 9 8 41 41 H 1.09000 * 109.90628 * 59.16331 * 12 8 6 42 42 H 1.08996 * 110.06172 * 297.98770 * 12 8 6 43 43 H 1.08998 * 109.49442 * 172.47240 * 13 11 10 44 44 H 1.09002 * 109.52234 * 52.39569 * 13 11 10 45 45 H 1.08993 * 109.47625 * 49.99784 * 15 14 13 46 46 H 1.09006 * 109.47099 * 289.99263 * 15 14 13 47 47 H 1.09005 * 109.47493 * 59.99662 * 16 15 14 48 48 H 1.08998 * 109.47006 * 299.99626 * 16 15 14 49 49 H 0.97001 * 119.99667 * 0.02562 * 20 19 17 50 50 H 1.08996 * 109.48716 * 179.17344 * 25 14 13 51 51 H 1.09008 * 109.48422 * 299.21607 * 25 14 13 52 52 H 1.09001 * 109.51949 * 182.63536 * 26 25 14 53 53 H 1.08998 * 109.56496 * 62.49090 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4172 9 6 2.9161 -2.1396 3.5026 10 6 3.5965 -3.3896 4.1173 11 6 2.4653 -4.4376 4.0171 12 6 1.7472 -4.0722 2.7085 13 6 1.5194 -4.3029 5.2035 14 7 2.2239 -4.6945 6.4347 15 6 1.3511 -4.5540 7.6079 16 6 2.0221 -5.1983 8.8227 17 6 1.1270 -5.0537 10.0265 18 1 0.1751 -4.5520 9.9343 19 6 1.5240 -5.5609 11.2455 20 7 2.6834 -6.1713 11.3578 21 14 0.4142 -5.3823 12.7375 22 1 -0.8253 -4.6624 12.3492 23 1 1.1227 -4.6136 13.7923 24 1 0.0631 -6.7283 13.2574 25 6 2.7397 -6.0667 6.3229 26 6 3.6993 -6.1540 5.1332 27 8 3.0130 -5.7473 3.9445 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 3.6664 -1.4586 3.1010 38 1 2.3057 -1.6323 4.2496 39 1 3.8740 -3.2123 5.1563 40 1 4.4629 -3.6921 3.5291 41 1 2.1041 -4.7092 1.8992 42 1 0.6708 -4.1937 2.8291 43 1 0.6562 -4.9520 5.0561 44 1 1.1864 -3.2684 5.2883 45 1 0.3992 -5.0482 7.4140 46 1 1.1775 -3.4965 7.8071 47 1 2.9741 -4.7040 9.0167 48 1 2.1957 -6.2557 8.6236 49 1 3.2595 -6.2643 10.5830 50 1 3.2697 -6.3316 7.2378 51 1 1.9090 -6.7561 6.1713 52 1 4.0466 -7.1810 5.0201 53 1 4.5527 -5.4977 5.3037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177050558.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -137.650119 kcal Electronic energy + Delta-G solvation = -31293.632501 eV Core-core repulsion = 27164.701285 eV Total energy + Delta-G solvation = -4128.931216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.16865 -41.35020 -38.99092 -37.71168 -37.14259 -35.34158 -35.08389 -32.90630 -31.60859 -30.94052 -29.17233 -28.36524 -28.28788 -27.07180 -25.19389 -25.06449 -24.25780 -22.77974 -21.75848 -20.70956 -20.16309 -19.10673 -18.98405 -17.97630 -17.58532 -17.38576 -17.08104 -16.49351 -16.21124 -16.05789 -15.72856 -15.57427 -15.47895 -15.45265 -15.15151 -14.74690 -14.49668 -14.25338 -14.14793 -13.83110 -13.71517 -13.38183 -13.34767 -13.10153 -13.02585 -12.88731 -12.87115 -12.76491 -12.67423 -12.54205 -12.45671 -12.30765 -12.16925 -12.01895 -11.93898 -11.68398 -11.41217 -11.37240 -11.15955 -10.74871 -10.66280 -10.54232 -9.93509 -9.43354 -8.69814 -6.40157 0.88785 1.52241 1.61198 1.65822 1.77524 2.50056 2.53585 2.72475 2.80367 3.15190 3.39765 3.48829 3.60118 3.75004 3.79701 3.91424 3.94545 4.00670 4.11426 4.15757 4.24857 4.31826 4.40719 4.44060 4.48586 4.49371 4.53416 4.60410 4.61856 4.68929 4.74054 4.76770 4.78741 4.84025 4.84479 4.88180 4.89161 4.94703 5.02781 5.08590 5.16370 5.21756 5.28037 5.33157 5.39382 5.41774 5.77290 5.95307 6.06505 6.08303 6.17863 6.28527 6.57969 7.16033 7.40600 8.71787 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.002216 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.560018 B =12633.300643 C =13456.353141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.363 6.363 6 C 0.667 3.333 7 O -0.590 6.590 8 N -0.603 5.603 9 C 0.109 3.891 10 C -0.142 4.142 11 C 0.117 3.883 12 C 0.148 3.852 13 C 0.038 3.962 14 N -0.532 5.532 15 C 0.084 3.916 16 C 0.016 3.984 17 C -0.620 4.620 18 H 0.048 0.952 19 C -0.036 4.036 20 N -0.936 5.936 21 Si 1.121 2.879 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.279 1.279 25 C 0.013 3.987 26 C 0.074 3.926 27 O -0.377 6.377 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.035 0.965 44 H 0.094 0.906 45 H 0.017 0.983 46 H 0.068 0.932 47 H -0.004 1.004 48 H -0.001 1.001 49 H 0.257 0.743 50 H 0.079 0.921 51 H 0.028 0.972 52 H 0.121 0.879 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 12.535 -24.284 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.277 6.277 6 C 0.423 3.577 7 O -0.482 6.482 8 N -0.345 5.345 9 C -0.013 4.013 10 C -0.180 4.180 11 C 0.076 3.924 12 C 0.026 3.974 13 C -0.090 4.090 14 N -0.257 5.257 15 C -0.043 4.043 16 C -0.021 4.021 17 C -0.658 4.658 18 H 0.066 0.934 19 C -0.234 4.234 20 N -0.573 5.573 21 Si 0.942 3.058 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.205 1.205 25 C -0.115 4.115 26 C -0.002 4.002 27 O -0.295 6.295 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.087 0.913 47 H 0.015 0.985 48 H 0.017 0.983 49 H 0.067 0.933 50 H 0.098 0.902 51 H 0.046 0.954 52 H 0.138 0.862 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.333 12.356 -23.172 26.294 hybrid contribution -0.622 -0.513 -1.249 1.487 sum 0.712 11.843 -24.421 27.150 Atomic orbital electron populations 1.22478 0.94037 1.03574 1.03638 1.22477 0.94605 0.92789 0.81429 1.21883 1.02492 0.90439 1.04361 1.22467 1.01667 1.02109 0.97356 1.86324 1.71448 1.22417 1.47545 1.17517 0.78512 0.80913 0.80795 1.90898 1.42385 1.71149 1.43721 1.47079 1.53504 1.12213 1.21670 1.22466 0.93735 0.96739 0.88355 1.23242 0.97609 0.93676 1.03512 1.21696 0.93680 0.84320 0.92716 1.21393 0.99778 0.80187 0.96065 1.22606 0.94989 1.02165 0.89270 1.62400 1.37261 1.23612 1.02386 1.21885 0.92990 1.00221 0.89215 1.19207 0.95486 0.94399 0.93015 1.22462 1.05909 1.40856 0.96599 0.93380 1.27352 0.98815 0.92713 1.04524 1.70859 1.10952 1.41867 1.33627 0.82879 0.73738 0.77123 0.72011 1.19631 1.20315 1.20501 1.22856 0.98844 0.89360 1.00481 1.22814 0.93420 1.02127 0.81874 1.87797 1.72933 1.30887 1.37901 0.92098 0.88888 0.92144 0.91101 0.87804 0.91309 0.92152 0.88907 0.91888 0.88410 0.90208 0.88023 0.89055 0.89961 0.90349 0.94676 0.88782 0.96484 0.91333 0.98523 0.98296 0.93297 0.90220 0.95400 0.86163 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.37 71.98 0.60 -2.48 16 2 C 0.12 2.09 1.13 -10.79 -0.01 2.07 16 3 C -0.13 -1.42 8.85 71.98 0.64 -0.78 16 4 C -0.18 -2.95 8.37 71.98 0.60 -2.34 16 5 O -0.36 -7.97 9.42 -55.44 -0.52 -8.49 16 6 C 0.67 17.06 7.93 129.79 1.03 18.09 16 7 O -0.59 -17.65 12.21 19.82 0.24 -17.41 16 8 N -0.60 -13.90 3.33 -942.61 -3.14 -17.04 16 9 C 0.11 2.06 6.59 86.88 0.57 2.63 16 10 C -0.14 -2.88 5.11 31.80 0.16 -2.72 16 11 C 0.12 2.79 0.92 -10.27 -0.01 2.78 16 12 C 0.15 3.49 6.23 86.47 0.54 4.03 16 13 C 0.04 1.05 4.15 86.04 0.36 1.41 16 14 N -0.53 -17.66 4.33 -896.33 -3.89 -21.55 16 15 C 0.08 3.43 5.22 86.30 0.45 3.89 16 16 C 0.02 0.81 3.56 29.85 0.11 0.92 16 17 C -0.62 -34.95 9.11 25.60 0.23 -34.72 16 18 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 19 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16 20 N -0.94 -57.09 13.65 21.45 0.29 -56.80 16 21 Si 1.12 49.98 29.90 68.60 2.05 52.03 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 C 0.01 0.42 4.94 86.31 0.43 0.84 16 26 C 0.07 1.83 6.78 72.02 0.49 2.32 16 27 O -0.38 -9.78 10.28 -148.98 -1.53 -11.31 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.06 1.40 5.88 -2.39 -0.01 1.38 16 31 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.36 5.88 -2.38 -0.01 1.35 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.59 8.04 -2.39 -0.02 1.57 16 38 H 0.08 1.47 7.68 -2.39 -0.02 1.46 16 39 H 0.10 2.24 7.56 -2.39 -0.02 2.22 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 42 H 0.08 1.88 7.82 -2.39 -0.02 1.86 16 43 H 0.03 1.03 8.13 -2.39 -0.02 1.01 16 44 H 0.09 2.42 7.37 -2.39 -0.02 2.41 16 45 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 46 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 47 H 0.00 -0.19 8.01 -2.38 -0.02 -0.21 16 48 H 0.00 -0.06 6.13 -2.39 -0.01 -0.07 16 49 H 0.26 15.80 7.22 -92.71 -0.67 15.13 16 50 H 0.08 2.90 6.01 -2.39 -0.01 2.88 16 51 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 53 H 0.07 1.67 7.43 -2.39 -0.02 1.65 16 Total: -1.00 -68.53 403.77 1.12 -67.41 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.97 Total: 18.84 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 6.65 Total: -5.67 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -6.73 Total: -95.39 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.81 Total: -37.21 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -68.53 1.12 -67.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177050558.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.243 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds