Wall clock time and date at job start Sat Apr 11 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47323 * 2 1 4 4 C 1.52996 * 109.47354 * 239.99852 * 2 1 3 5 5 O 1.45202 * 109.47082 * 119.99714 * 2 1 3 6 6 C 1.34634 * 117.00070 * 60.00008 * 5 2 1 7 7 O 1.21515 * 119.99613 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00369 * 179.97438 * 6 5 2 9 9 C 1.47237 * 121.71469 * 359.97438 * 8 6 5 10 10 C 1.53097 * 109.39805 * 131.47816 * 9 8 6 11 11 N 1.47454 * 109.77912 * 48.44632 * 10 9 8 12 12 C 1.48071 * 109.71574 * 49.00175 * 11 10 9 13 13 C 1.54096 * 106.82736 * 269.94347 * 12 11 10 14 14 H 1.09003 * 110.42005 * 119.45607 * 13 12 11 15 15 O 1.42900 * 110.42262 * 241.92577 * 13 12 11 16 16 C 1.42896 * 113.99947 * 268.54547 * 15 13 12 17 17 C 1.53000 * 109.47124 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47490 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47520 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99795 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00286 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99944 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00104 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47332 * 59.99988 * 23 21 19 25 25 H 1.48497 * 109.47316 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46996 * 300.00121 * 23 21 19 27 27 C 1.48379 * 121.71639 * 179.97438 * 8 6 5 28 28 H 1.08995 * 114.47457 * 5.47119 * 27 8 6 29 29 C 1.48794 * 108.53247 * 294.46400 * 11 10 9 30 30 H 1.09004 * 109.46969 * 299.99913 * 1 2 3 31 31 H 1.09003 * 109.47130 * 59.99606 * 1 2 3 32 32 H 1.08993 * 109.47310 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47253 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47339 * 300.00266 * 3 2 1 35 35 H 1.09001 * 109.47103 * 59.99357 * 3 2 1 36 36 H 1.09004 * 109.47163 * 300.00556 * 4 2 1 37 37 H 1.09002 * 109.47394 * 59.99813 * 4 2 1 38 38 H 1.08998 * 109.47473 * 180.02562 * 4 2 1 39 39 H 1.09000 * 109.48283 * 11.49729 * 9 8 6 40 40 H 1.09005 * 109.49151 * 251.46728 * 9 8 6 41 41 H 1.08995 * 109.41883 * 288.34743 * 10 9 8 42 42 H 1.09000 * 109.36749 * 168.51078 * 10 9 8 43 43 H 1.09004 * 109.98908 * 150.60397 * 12 11 10 44 44 H 1.09005 * 109.99376 * 29.28665 * 12 11 10 45 45 H 1.08995 * 109.47448 * 300.00070 * 16 15 13 46 46 H 1.09008 * 109.47268 * 60.00336 * 16 15 13 47 47 H 1.09002 * 109.47338 * 300.00443 * 17 16 15 48 48 H 1.09003 * 109.47092 * 60.00400 * 17 16 15 49 49 H 1.09009 * 109.46953 * 299.99995 * 18 17 16 50 50 H 1.09000 * 109.47554 * 59.99952 * 18 17 16 51 51 H 0.96997 * 120.00218 * 180.02562 * 22 21 19 52 52 H 1.09007 * 110.97790 * 316.41481 * 29 11 10 53 53 H 1.08998 * 110.98116 * 192.62552 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5036 8 7 2.0680 -2.6656 2.4167 9 6 2.9189 -2.0527 3.4502 10 6 2.3352 -2.3528 4.8333 11 7 2.0229 -3.7898 4.9420 12 6 3.1861 -4.5890 4.4942 13 6 3.0116 -4.8214 2.9809 14 1 3.8483 -4.3904 2.4309 15 8 2.8959 -6.2179 2.7009 16 6 4.1412 -6.8590 2.4176 17 6 3.8980 -8.3427 2.1339 18 6 5.2314 -9.0293 1.8312 19 6 4.9918 -10.4906 1.5511 20 1 3.9888 -10.8897 1.5859 21 6 6.0530 -11.3179 1.2504 22 7 7.2743 -10.8320 1.2085 23 14 5.7561 -13.1293 0.9039 24 1 4.8507 -13.2678 -0.2650 25 1 7.0501 -13.7957 0.6100 26 1 5.1312 -13.7646 2.0919 27 6 1.6917 -4.0859 2.6235 28 1 1.1415 -4.5324 1.7953 29 6 0.9332 -4.1109 3.9810 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 2.9564 -0.9740 3.2976 40 1 3.9260 -2.4644 3.3834 41 1 1.4239 -1.7720 4.9758 42 1 3.0616 -2.0808 5.5991 43 1 3.2055 -5.5447 5.0181 44 1 4.1095 -4.0414 4.6830 45 1 4.5997 -6.3931 1.5455 46 1 4.8059 -6.7570 3.2756 47 1 3.4393 -8.8090 3.0058 48 1 3.2336 -8.4444 1.2758 49 1 5.6905 -8.5631 0.9594 50 1 5.8955 -8.9277 2.6895 51 1 8.0208 -11.4139 0.9966 52 1 0.1535 -3.3496 4.0064 53 1 0.5180 -5.0993 4.1779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205656461.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:53 Heat of formation + Delta-G solvation = -132.272725 kcal Electronic energy + Delta-G solvation = -31153.249566 eV Core-core repulsion = 27024.551532 eV Total energy + Delta-G solvation = -4128.698034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.51561 -41.26231 -38.75171 -37.96247 -35.94359 -35.61111 -34.49734 -33.68968 -32.46444 -29.84084 -28.67833 -28.39629 -28.31005 -27.98872 -25.00079 -24.74335 -23.75603 -22.20758 -21.96952 -21.36979 -20.23933 -19.24837 -18.60658 -18.00135 -17.60702 -17.23887 -17.06121 -16.62770 -16.46654 -16.13928 -15.92280 -15.65785 -15.38275 -15.20859 -15.11559 -14.63666 -14.47312 -14.26517 -13.79094 -13.71135 -13.55992 -13.32405 -13.16786 -12.98002 -12.94168 -12.89099 -12.82650 -12.66233 -12.60338 -12.54598 -12.39324 -12.34418 -12.31561 -12.03015 -11.92207 -11.73464 -11.50953 -11.43624 -11.23660 -11.17015 -10.72689 -10.56699 -10.51677 -9.29537 -8.22245 -6.33163 0.85305 1.39969 1.43127 1.51062 1.62205 2.38315 2.52132 2.74280 2.84835 3.11130 3.41329 3.59081 3.66648 3.72217 3.77125 3.91933 3.93157 3.94485 4.01302 4.14493 4.18419 4.30986 4.37232 4.44881 4.52992 4.55364 4.56118 4.59053 4.63344 4.73111 4.73918 4.78434 4.82318 4.85525 4.86383 4.89375 4.92899 4.99108 5.08615 5.14604 5.19908 5.25351 5.31887 5.39135 5.47681 5.58736 5.67841 5.80974 5.83503 6.13100 6.17401 6.26130 6.82116 7.14495 7.35881 8.89569 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002228 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.827555 B =12565.021173 C =13664.169473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.361 6.361 6 C 0.653 3.347 7 O -0.592 6.592 8 N -0.595 5.595 9 C 0.073 3.927 10 C 0.025 3.975 11 N -0.496 5.496 12 C 0.013 3.987 13 C 0.049 3.951 14 H 0.070 0.930 15 O -0.385 6.385 16 C 0.077 3.923 17 C -0.096 4.096 18 C 0.029 3.971 19 C -0.546 4.546 20 H 0.059 0.941 21 C 0.000 4.000 22 N -0.932 5.932 23 Si 0.966 3.034 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.266 1.266 27 C 0.128 3.872 28 H 0.113 0.887 29 C 0.033 3.967 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.042 0.958 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.050 0.950 49 H -0.006 1.006 50 H 0.000 1.000 51 H 0.265 0.735 52 H 0.094 0.906 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 29.356 4.410 31.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.276 6.276 6 C 0.409 3.591 7 O -0.483 6.483 8 N -0.337 5.337 9 C -0.050 4.050 10 C -0.104 4.104 11 N -0.217 5.217 12 C -0.116 4.116 13 C -0.011 4.011 14 H 0.088 0.912 15 O -0.304 6.304 16 C 0.001 3.999 17 C -0.134 4.134 18 C -0.008 4.008 19 C -0.584 4.584 20 H 0.077 0.923 21 C -0.198 4.198 22 N -0.572 5.572 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.191 1.191 27 C 0.024 3.976 28 H 0.131 0.869 29 C -0.096 4.096 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.135 0.865 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.012 0.988 50 H 0.018 0.982 51 H 0.074 0.926 52 H 0.113 0.887 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.023 29.031 4.677 31.769 hybrid contribution 0.720 -0.943 -1.465 1.885 sum -11.303 28.089 3.212 30.447 Atomic orbital electron populations 1.22454 0.93807 1.03510 1.03743 1.22435 0.94715 0.92761 0.81216 1.21871 1.02378 0.90269 1.04516 1.22485 1.01482 1.02080 0.97854 1.86292 1.71431 1.22549 1.47305 1.18057 0.78570 0.81039 0.81480 1.90914 1.42470 1.71040 1.43842 1.47506 1.53571 1.11083 1.21521 1.22633 0.93826 1.00654 0.87849 1.23023 1.03252 0.89049 0.95029 1.65992 1.05092 1.05239 1.45400 1.23644 0.95298 1.00297 0.92326 1.23919 0.97504 0.82420 0.97287 0.91222 1.87882 1.31274 1.20669 1.90540 1.22535 0.85154 0.93239 0.99007 1.21390 0.98710 0.92399 1.00859 1.18908 0.92335 0.94491 0.95086 1.21620 0.93809 0.95267 1.47676 0.92274 1.25975 0.94809 1.03949 0.95034 1.70075 0.99605 1.37652 1.49853 0.85484 0.77530 0.78829 0.79124 1.19332 1.20635 1.19068 1.23259 0.95426 0.78169 1.00731 0.86917 1.23853 0.94696 1.03728 0.87306 0.91549 0.89142 0.92331 0.91301 0.88042 0.90724 0.92514 0.89011 0.92268 0.87133 0.90590 0.89120 0.86521 0.89472 0.88287 0.94016 0.92489 0.92305 0.93120 0.98793 0.98189 0.92647 0.88745 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 2 C 0.12 2.09 1.13 -10.80 -0.01 2.08 16 3 C -0.13 -1.30 8.85 71.98 0.64 -0.67 16 4 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 5 O -0.36 -7.46 8.66 -55.43 -0.48 -7.94 16 6 C 0.65 16.36 7.79 129.79 1.01 17.37 16 7 O -0.59 -18.27 11.60 19.79 0.23 -18.04 16 8 N -0.59 -12.83 2.70 -912.42 -2.46 -15.29 16 9 C 0.07 1.08 5.76 86.27 0.50 1.57 16 10 C 0.03 0.32 5.91 86.23 0.51 0.83 16 11 N -0.50 -9.06 5.97 -878.67 -5.24 -14.30 16 12 C 0.01 0.27 6.03 86.45 0.52 0.79 16 13 C 0.05 1.24 2.46 31.74 0.08 1.32 16 14 H 0.07 1.78 7.20 -2.39 -0.02 1.77 16 15 O -0.39 -12.55 9.99 -148.98 -1.49 -14.03 16 16 C 0.08 2.74 5.80 71.98 0.42 3.15 16 17 C -0.10 -4.15 5.52 30.59 0.17 -3.98 16 18 C 0.03 1.55 4.97 29.85 0.15 1.70 16 19 C -0.55 -31.70 9.11 25.60 0.23 -31.46 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 21 C 0.00 0.01 5.46 84.65 0.46 0.48 16 22 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 23 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 27 C 0.13 3.09 4.15 46.28 0.19 3.28 16 28 H 0.11 3.27 7.48 -2.39 -0.02 3.26 16 29 C 0.03 0.67 6.53 86.81 0.57 1.23 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.35 5.88 -2.39 -0.01 1.33 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 1.45 5.88 -2.38 -0.01 1.43 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.36 7.09 -2.39 -0.02 1.34 16 40 H 0.08 1.09 6.25 -2.38 -0.01 1.08 16 41 H 0.09 1.06 7.91 -2.39 -0.02 1.04 16 42 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 2.05 7.97 -2.39 -0.02 2.03 16 44 H 0.10 1.61 7.02 -2.38 -0.02 1.59 16 45 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 46 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 49 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 50 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 51 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 52 H 0.09 1.71 7.84 -2.38 -0.02 1.70 16 53 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -70.47 407.95 0.37 -70.10 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.87 Total: 16.74 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 6.64 Total: -7.40 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -7.42 Total: -86.23 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -1.74 Total: -40.01 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.47 0.37 -70.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205656461.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.172 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds