Wall clock time and date at job start Sat Apr 11 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.47024 * 125.64779 * 359.69658 * 8 6 5 10 10 C 1.54331 * 107.26614 * 178.84768 * 9 8 6 11 11 C 1.55156 * 103.02179 * 338.13854 * 10 9 8 12 12 H 1.09004 * 111.03947 * 277.22121 * 11 10 9 13 13 C 1.52991 * 111.00800 * 153.37909 * 11 10 9 14 14 O 1.42905 * 109.47590 * 181.34995 * 13 11 10 15 15 C 1.42898 * 114.00442 * 180.02562 * 14 13 11 16 16 C 1.53935 * 113.73033 * 248.77064 * 15 14 13 17 17 N 1.48192 * 86.09841 * 221.95569 * 16 15 14 18 18 C 1.46898 * 111.07292 * 137.52085 * 17 16 15 19 19 C 1.50701 * 109.47181 * 90.56671 * 18 17 16 20 20 H 1.08002 * 119.99917 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99876 * 180.02562 * 19 18 17 22 22 N 1.31508 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99617 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47099 * 90.00266 * 23 21 19 25 25 H 1.48507 * 109.46589 * 210.00145 * 23 21 19 26 26 H 1.48505 * 109.47275 * 329.99645 * 23 21 19 27 27 C 1.47964 * 90.79933 * 24.59678 * 17 16 15 28 28 C 1.47424 * 125.64899 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.88271 * 298.39176 * 9 8 6 39 39 H 1.09002 * 109.88395 * 59.55797 * 9 8 6 40 40 H 1.09001 * 110.85313 * 219.67261 * 10 9 8 41 41 H 1.08996 * 110.51889 * 96.44781 * 10 9 8 42 42 H 1.08996 * 109.47388 * 301.35473 * 13 11 10 43 43 H 1.09001 * 109.47119 * 61.35260 * 13 11 10 44 44 H 1.09006 * 112.93727 * 20.33203 * 15 14 13 45 45 H 1.08996 * 113.76061 * 336.22948 * 16 15 14 46 46 H 1.08999 * 113.76446 * 107.60332 * 16 15 14 47 47 H 1.09001 * 109.47042 * 210.56410 * 18 17 16 48 48 H 1.09002 * 109.47194 * 330.56471 * 18 17 16 49 49 H 0.96996 * 120.00256 * 179.97438 * 22 21 19 50 50 H 1.08997 * 113.75808 * 221.08641 * 27 17 16 51 51 H 1.09001 * 113.75334 * 89.72030 * 27 17 16 52 52 H 1.09001 * 110.36250 * 322.93302 * 28 8 6 53 53 H 1.08996 * 110.36793 * 85.14589 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 2.9210 -2.1437 3.4943 10 6 3.1089 -3.2804 4.5211 11 6 1.8947 -4.2059 4.2443 12 1 1.0021 -3.8434 4.7542 13 6 2.2032 -5.6499 4.6447 14 8 1.0769 -6.4777 4.3474 15 6 1.2615 -7.8538 4.6854 16 6 1.3571 -8.7845 3.4630 17 7 0.4959 -9.7146 4.2307 18 6 -0.5412 -10.3036 3.3733 19 6 -0.0268 -11.5858 2.7712 20 1 0.9711 -11.9285 3.0021 21 6 -0.8296 -12.3207 1.9248 22 7 -2.0441 -11.9026 1.6424 23 14 -0.1916 -13.9096 1.1779 24 1 -0.5222 -15.0459 2.0749 25 1 -0.8270 -14.1238 -0.1472 26 1 1.2816 -13.8221 1.0121 27 6 -0.0474 -8.5897 5.0237 28 6 1.7475 -4.0749 2.7079 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 3.8875 -1.8435 3.0897 39 1 2.4359 -1.2921 3.9715 40 1 3.0743 -2.8932 5.5394 41 1 4.0452 -3.8082 4.3397 42 1 3.0711 -6.0037 4.0883 43 1 2.4141 -5.6935 5.7132 44 1 2.0539 -8.0088 5.4177 45 1 0.8817 -8.3839 2.5677 46 1 2.3615 -9.1655 3.2784 47 1 -1.4296 -10.5129 3.9692 48 1 -0.7946 -9.6041 2.5767 49 1 -2.6087 -12.4194 1.0467 50 1 -0.1630 -8.8152 6.0838 51 1 -0.9344 -8.1319 4.5858 52 1 0.7258 -4.3022 2.4039 53 1 2.4497 -4.7363 2.2004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224442318.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:44 Heat of formation + Delta-G solvation = -112.732824 kcal Electronic energy + Delta-G solvation = -30024.050765 eV Core-core repulsion = 25896.200044 eV Total energy + Delta-G solvation = -4127.850721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.91698 -40.88030 -39.87274 -37.99714 -37.34276 -35.17808 -34.97655 -33.17844 -31.08235 -30.26422 -28.40457 -28.30912 -27.45909 -27.10632 -26.57934 -24.34116 -23.35282 -22.60607 -21.50230 -20.80568 -20.39235 -18.99603 -18.65388 -18.10295 -17.68644 -17.51815 -17.02402 -16.67771 -16.28445 -16.17826 -16.05789 -15.43396 -15.28918 -14.99221 -14.79444 -14.43033 -14.23960 -14.12514 -14.03904 -13.79191 -13.70503 -13.36233 -13.24608 -13.08549 -12.99252 -12.92505 -12.89136 -12.70541 -12.59851 -12.48236 -12.32646 -12.26871 -12.22847 -12.17824 -11.78381 -11.63329 -11.56664 -11.43092 -11.17447 -11.15257 -10.64824 -10.39667 -9.84116 -9.65328 -8.24718 -6.36120 1.00776 1.38193 1.40845 1.52135 1.67840 2.36993 2.55734 2.88944 3.07122 3.29228 3.51212 3.54806 3.56389 3.72855 3.76676 3.87367 3.92082 4.05786 4.23124 4.29097 4.36735 4.45194 4.49010 4.55883 4.56603 4.57951 4.62205 4.68583 4.69917 4.72984 4.73678 4.76022 4.81027 4.82662 4.86054 4.88483 4.93648 4.98635 5.02599 5.08638 5.11625 5.19686 5.24701 5.30630 5.34025 5.42601 5.55035 5.75400 6.04734 6.32607 6.36840 6.39762 6.78423 7.19926 7.33597 8.86725 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.002024 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.923404 B =13827.629273 C =15327.015480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.132 4.132 4 C -0.180 4.180 5 O -0.361 6.361 6 C 0.657 3.343 7 O -0.600 6.600 8 N -0.609 5.609 9 C 0.101 3.899 10 C -0.109 4.109 11 C -0.090 4.090 12 H 0.092 0.908 13 C 0.066 3.934 14 O -0.396 6.396 15 C 0.090 3.910 16 C -0.011 4.011 17 N -0.488 5.488 18 C 0.179 3.821 19 C -0.527 4.527 20 H 0.062 0.938 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.975 3.025 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.263 1.263 27 C -0.005 4.005 28 C 0.130 3.870 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.001 0.999 48 H -0.029 1.029 49 H 0.265 0.735 50 H 0.106 0.894 51 H 0.051 0.949 52 H 0.052 0.948 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.693 29.927 4.937 33.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.275 6.275 6 C 0.412 3.588 7 O -0.491 6.491 8 N -0.350 5.350 9 C -0.020 4.020 10 C -0.147 4.147 11 C -0.110 4.110 12 H 0.110 0.890 13 C -0.010 4.010 14 O -0.315 6.315 15 C 0.031 3.969 16 C -0.140 4.140 17 N -0.212 5.212 18 C 0.051 3.949 19 C -0.565 4.565 20 H 0.081 0.919 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.188 1.188 27 C -0.134 4.134 28 C 0.008 3.992 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.144 0.856 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.019 0.981 48 H -0.011 1.011 49 H 0.074 0.926 50 H 0.125 0.875 51 H 0.070 0.930 52 H 0.071 0.929 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.411 29.370 4.704 33.051 hybrid contribution -0.944 -0.648 -1.407 1.814 sum 13.467 28.721 3.297 31.893 Atomic orbital electron populations 1.22477 0.94333 1.03286 1.03679 1.22445 0.94401 0.92985 0.81450 1.21862 1.02533 0.90061 1.04431 1.22474 1.01718 1.01936 0.97624 1.86304 1.71430 1.22465 1.47320 1.17787 0.78655 0.80925 0.81389 1.90924 1.42755 1.71317 1.44114 1.47351 1.53024 1.12908 1.21708 1.22295 0.94655 0.98032 0.87062 1.22695 0.97464 0.94239 1.00279 1.22316 1.01013 0.94810 0.92822 0.88995 1.22701 0.88504 0.88470 1.01366 1.87977 1.40363 1.18396 1.84762 1.23999 0.97784 0.79491 0.95603 1.24430 0.99594 0.93263 0.96708 1.68468 1.15757 1.19501 1.17468 1.19862 0.90368 0.94384 0.90246 1.21439 1.00884 1.07017 1.27139 0.91930 1.26032 0.95027 1.02171 0.96896 1.70093 1.09475 1.40797 1.37274 0.85295 0.78731 0.78529 0.77526 1.19475 1.20675 1.18753 1.24223 0.96926 0.91321 1.00900 1.22233 1.00761 0.79237 0.96925 0.91772 0.89024 0.92742 0.90923 0.87994 0.90963 0.92711 0.89038 0.91705 0.89906 0.90183 0.86424 0.88461 0.91827 0.89610 0.85600 0.93597 0.88994 0.98119 1.01122 0.92596 0.87544 0.93034 0.92893 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 8.37 71.98 0.60 -2.84 16 2 C 0.12 2.23 1.13 -10.79 -0.01 2.22 16 3 C -0.13 -1.36 8.85 71.98 0.64 -0.72 16 4 C -0.18 -3.40 8.37 71.98 0.60 -2.80 16 5 O -0.36 -8.05 9.49 -55.54 -0.53 -8.57 16 6 C 0.66 17.90 7.93 129.79 1.03 18.93 16 7 O -0.60 -20.53 12.14 19.82 0.24 -20.29 16 8 N -0.61 -13.58 3.33 -942.11 -3.13 -16.72 16 9 C 0.10 1.30 6.90 86.73 0.60 1.89 16 10 C -0.11 -0.92 6.42 31.78 0.20 -0.72 16 11 C -0.09 -1.43 3.33 -9.41 -0.03 -1.46 16 12 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 13 C 0.07 1.12 5.23 71.98 0.38 1.50 16 14 O -0.40 -10.89 10.22 -148.98 -1.52 -12.41 16 15 C 0.09 2.64 4.48 31.24 0.14 2.78 16 16 C -0.01 -0.41 7.81 86.37 0.67 0.26 16 17 N -0.49 -22.05 6.14 -915.71 -5.62 -27.68 16 18 C 0.18 10.11 4.55 85.56 0.39 10.50 16 19 C -0.53 -31.50 9.36 25.60 0.24 -31.26 16 20 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 21 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 22 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 23 Si 0.98 45.85 29.54 68.60 2.03 47.88 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.00 -0.17 7.78 86.41 0.67 0.50 16 28 C 0.13 3.04 6.23 86.85 0.54 3.58 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.45 5.88 -2.38 -0.01 1.43 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.05 1.44 5.88 -2.38 -0.01 1.43 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.10 0.60 8.04 -2.39 -0.02 0.58 16 42 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.13 2.84 7.89 -2.38 -0.02 2.82 16 45 H 0.05 2.01 7.49 -2.39 -0.02 1.99 16 46 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.00 0.04 8.08 -2.39 -0.02 0.02 16 48 H -0.03 -1.79 7.39 -2.39 -0.02 -1.81 16 49 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 50 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 51 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 52 H 0.05 1.60 8.04 -2.39 -0.02 1.58 16 53 H 0.07 1.64 8.01 -2.39 -0.02 1.62 16 Total: -1.00 -79.10 420.48 -0.27 -79.37 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.86 Total: 14.29 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 7.13 Total: 2.62 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -8.47 Total: -102.89 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.81 Total: -41.27 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -79.10 -0.27 -79.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224442318.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.364 kcal (2) G-P(sol) polarization free energy of solvation -79.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds