Wall clock time and date at job start Sat Apr 11 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.52994 * 109.47345 * 240.00068 * 2 1 3 5 5 O 1.45198 * 109.46807 * 119.99778 * 2 1 3 6 6 C 1.34633 * 117.00133 * 60.00142 * 5 2 1 7 7 O 1.21516 * 120.00023 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00554 * 179.97438 * 6 5 2 9 9 C 1.47076 * 136.05317 * 359.63691 * 8 6 5 10 10 C 1.53491 * 87.98259 * 153.13190 * 9 8 6 11 11 C 1.53004 * 114.20571 * 139.65648 * 10 9 8 12 12 C 1.53000 * 109.47322 * 91.39658 * 11 10 9 13 13 O 1.42902 * 109.46964 * 180.02562 * 12 11 10 14 14 C 1.42894 * 113.99922 * 180.02562 * 13 12 11 15 15 H 1.09012 * 110.64433 * 333.13793 * 14 13 12 16 16 C 1.55157 * 110.72110 * 209.99833 * 14 13 12 17 17 C 1.54907 * 101.58141 * 206.13168 * 16 14 13 18 18 N 1.47428 * 104.83287 * 37.00887 * 17 16 14 19 19 C 1.36934 * 125.64928 * 155.83734 * 18 17 16 20 20 H 1.08009 * 119.99841 * 353.85073 * 19 18 17 21 21 C 1.38806 * 120.00096 * 173.85382 * 19 18 17 22 22 N 1.31623 * 120.00318 * 6.80330 * 21 19 18 23 23 Si 1.86807 * 120.00221 * 186.80670 * 21 19 18 24 24 H 1.48498 * 109.47189 * 94.98044 * 23 21 19 25 25 H 1.48499 * 109.47290 * 214.98467 * 23 21 19 26 26 H 1.48504 * 109.46834 * 334.98451 * 23 21 19 27 27 C 1.47019 * 108.70338 * 335.86961 * 18 17 16 28 28 C 1.47061 * 136.06423 * 180.02562 * 8 6 5 29 29 H 1.08994 * 109.47494 * 300.00675 * 1 2 3 30 30 H 1.09010 * 109.46619 * 60.00418 * 1 2 3 31 31 H 1.08996 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47324 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47367 * 299.99908 * 3 2 1 34 34 H 1.09007 * 109.46938 * 59.99641 * 3 2 1 35 35 H 1.09005 * 109.47088 * 300.00315 * 4 2 1 36 36 H 1.08996 * 109.47658 * 60.00117 * 4 2 1 37 37 H 1.08996 * 109.47451 * 180.02562 * 4 2 1 38 38 H 1.09000 * 113.46221 * 267.91095 * 9 8 6 39 39 H 1.09001 * 113.46657 * 38.34968 * 9 8 6 40 40 H 1.08999 * 114.20794 * 272.47532 * 10 9 8 41 41 H 1.08994 * 109.47259 * 211.40199 * 11 10 9 42 42 H 1.08999 * 109.46527 * 331.39796 * 11 10 9 43 43 H 1.09004 * 109.46925 * 300.00166 * 12 11 10 44 44 H 1.08997 * 109.47264 * 60.00013 * 12 11 10 45 45 H 1.09001 * 111.00333 * 324.20360 * 16 14 13 46 46 H 1.08996 * 111.00293 * 88.05851 * 16 14 13 47 47 H 1.09007 * 110.36593 * 155.84410 * 17 16 14 48 48 H 1.09001 * 110.37044 * 278.17044 * 17 16 14 49 49 H 0.96995 * 119.99763 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.88582 * 241.64639 * 27 18 17 51 51 H 1.08995 * 109.88356 * 120.47340 * 27 18 17 52 52 H 1.09001 * 113.46442 * 321.64490 * 28 8 6 53 53 H 1.08992 * 113.47115 * 92.08252 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0679 -2.6657 2.4167 9 6 2.8983 -2.3883 3.5985 10 6 2.1107 -3.4770 4.3402 11 6 2.9681 -4.3672 5.2422 12 6 3.0087 -3.7758 6.6526 13 8 3.8100 -4.6069 7.4948 14 6 3.9134 -4.1416 8.8418 15 1 3.7854 -3.0599 8.8857 16 6 5.2719 -4.5592 9.4642 17 6 4.9237 -4.5990 10.9731 18 7 3.5487 -5.1278 11.0292 19 6 2.9831 -5.7685 12.0991 20 1 3.5844 -6.0108 12.9630 21 6 1.6372 -6.1068 12.0734 22 7 0.9361 -5.9342 10.9728 23 14 0.8206 -6.8070 13.6007 24 1 0.1667 -5.7105 14.3592 25 1 -0.1995 -7.8095 13.2012 26 1 1.8457 -7.4576 14.4558 27 6 2.8854 -4.8539 9.7461 28 6 1.8965 -4.0346 2.9261 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.9507 -2.6341 3.4568 39 1 2.7497 -1.3893 4.0086 40 1 1.2008 -3.1202 4.8228 41 1 2.5377 -5.3679 5.2800 42 1 3.9804 -4.4220 4.8418 43 1 3.4391 -2.7750 6.6147 44 1 1.9964 -3.7209 7.0529 45 1 5.5790 -5.5426 9.1080 46 1 6.0407 -3.8139 9.2601 47 1 5.6073 -5.2626 11.5028 48 1 4.9620 -3.5959 11.3978 49 1 -0.0045 -6.1703 10.9550 50 1 2.0218 -4.2082 9.9055 51 1 2.5711 -5.7897 9.2841 52 1 0.8960 -4.4357 2.7645 53 1 2.6823 -4.7185 2.6055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225080840.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:01 Heat of formation + Delta-G solvation = -85.234628 kcal Electronic energy + Delta-G solvation = -29656.349384 eV Core-core repulsion = 25529.691075 eV Total energy + Delta-G solvation = -4126.658309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -41.98364 -40.59212 -39.73535 -37.79169 -37.42406 -35.11816 -34.39149 -33.31570 -30.82321 -29.47136 -28.77146 -28.39264 -28.31873 -27.06237 -26.31835 -24.54083 -22.71759 -21.97968 -21.85043 -21.18197 -20.29228 -18.92282 -18.82457 -17.75527 -17.74034 -17.42854 -17.06215 -16.59698 -16.12335 -16.10312 -15.78664 -15.56308 -15.22318 -15.09638 -14.64613 -14.31515 -14.21778 -14.07336 -13.60388 -13.46952 -13.36727 -13.24595 -13.17982 -13.09474 -12.93486 -12.90867 -12.89028 -12.68888 -12.64548 -12.52330 -12.37492 -12.12272 -12.08903 -11.89288 -11.85097 -11.74147 -11.42855 -11.36506 -11.29873 -11.10164 -10.70701 -10.26997 -9.89086 -8.89219 -7.85230 -5.20982 0.92739 1.45865 1.47902 1.56955 1.69414 2.48291 2.71832 2.76600 3.28003 3.33746 3.72425 3.73956 3.77352 3.86969 3.92390 3.94558 4.04065 4.11712 4.20811 4.25767 4.29978 4.39581 4.47838 4.55392 4.57572 4.58857 4.59188 4.63159 4.67683 4.70216 4.73828 4.80721 4.85501 4.87016 4.90239 5.02782 5.04131 5.10632 5.11667 5.20521 5.25066 5.30322 5.33090 5.41305 5.45649 5.46311 5.50653 5.74180 6.19756 6.49227 6.59490 7.09612 7.18738 7.77623 8.42096 9.25095 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.001687 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.221705 B =16593.463138 C =17153.625363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.178 4.178 5 O -0.367 6.367 6 C 0.672 3.328 7 O -0.598 6.598 8 N -0.645 5.645 9 C 0.110 3.890 10 C -0.107 4.107 11 C -0.092 4.092 12 C 0.056 3.944 13 O -0.390 6.390 14 C 0.076 3.924 15 H 0.079 0.921 16 C -0.114 4.114 17 C 0.125 3.875 18 N -0.630 5.630 19 C -0.244 4.244 20 H 0.086 0.914 21 C -0.069 4.069 22 N -0.950 5.950 23 Si 0.979 3.021 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.173 3.827 28 C 0.131 3.869 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.049 0.951 48 H 0.035 0.965 49 H 0.246 0.754 50 H 0.008 0.992 51 H 0.007 0.993 52 H 0.077 0.923 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.127 14.213 -23.013 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.282 6.282 6 C 0.429 3.571 7 O -0.490 6.490 8 N -0.387 5.387 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.130 4.130 12 C -0.020 4.020 13 O -0.309 6.309 14 C 0.017 3.983 15 H 0.097 0.903 16 C -0.152 4.152 17 C 0.001 3.999 18 N -0.358 5.358 19 C -0.373 4.373 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.213 1.213 25 H -0.223 1.223 26 H -0.190 1.190 27 C 0.047 3.953 28 C 0.010 3.990 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.125 0.875 47 H 0.068 0.932 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.026 0.974 51 H 0.026 0.974 52 H 0.096 0.904 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.755 14.012 -23.536 27.989 hybrid contribution -1.280 -0.507 0.841 1.613 sum 4.476 13.505 -22.695 26.786 Atomic orbital electron populations 1.22475 0.94104 1.03487 1.03611 1.22468 0.94576 0.92845 0.81531 1.21880 1.02463 0.90459 1.04347 1.22457 1.01640 1.02048 0.97370 1.86321 1.71395 1.22944 1.47512 1.17524 0.78722 0.80741 0.80161 1.90886 1.43236 1.71403 1.43431 1.48374 1.53390 1.15464 1.21490 1.23396 0.96368 1.00809 0.80588 1.22765 1.00062 0.96483 0.93314 1.21267 1.01200 0.99058 0.91512 1.22674 0.94161 0.94326 0.90877 1.87832 1.70854 1.52256 1.19972 1.23272 0.96211 0.97234 0.81582 0.90303 1.22782 0.95708 1.02610 0.94058 1.21824 0.85651 0.97001 0.95460 1.44726 1.11106 1.67202 1.12739 1.19515 0.92815 1.30015 0.94928 0.89662 1.25721 0.97246 1.02794 1.00412 1.70220 1.07575 1.55046 1.27081 0.85048 0.78116 0.77288 0.78831 1.21345 1.22298 1.19006 1.21281 0.92534 0.96251 0.85237 1.23216 1.03642 0.82625 0.89501 0.92156 0.88869 0.92261 0.91127 0.87774 0.91365 0.92259 0.88882 0.91890 0.87227 0.89395 0.87573 0.90884 0.88850 0.91354 0.94843 0.91439 0.87490 0.93243 0.94758 0.94487 0.97426 0.97437 0.90427 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.37 71.98 0.60 -2.51 16 2 C 0.12 2.09 1.13 -10.79 -0.01 2.08 16 3 C -0.13 -1.42 8.85 71.98 0.64 -0.78 16 4 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 5 O -0.37 -8.18 9.91 -55.43 -0.55 -8.73 16 6 C 0.67 17.03 8.26 129.79 1.07 18.10 16 7 O -0.60 -18.03 12.66 19.79 0.25 -17.78 16 8 N -0.65 -13.30 3.69 -988.89 -3.65 -16.94 16 9 C 0.11 1.59 8.22 83.17 0.68 2.28 16 10 C -0.11 -1.66 4.00 -10.46 -0.04 -1.70 16 11 C -0.09 -1.68 5.50 30.60 0.17 -1.51 16 12 C 0.06 1.40 5.76 71.98 0.41 1.81 16 13 O -0.39 -13.12 10.07 -148.98 -1.50 -14.62 16 14 C 0.08 2.78 3.45 31.78 0.11 2.89 16 15 H 0.08 2.57 7.82 -2.38 -0.02 2.55 16 16 C -0.11 -3.74 6.81 31.99 0.22 -3.53 16 17 C 0.13 4.99 7.23 86.85 0.63 5.62 16 18 N -0.63 -32.99 3.39 -691.98 -2.35 -35.34 16 19 C -0.24 -13.89 10.26 84.03 0.86 -13.03 16 20 H 0.09 4.60 7.84 -2.91 -0.02 4.58 16 21 C -0.07 -3.99 5.48 84.86 0.47 -3.53 16 22 N -0.95 -58.36 10.36 21.65 0.22 -58.14 16 23 Si 0.98 46.28 29.56 68.60 2.03 48.31 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C 0.17 8.73 5.15 86.73 0.45 9.18 16 28 C 0.13 2.19 8.19 83.18 0.68 2.87 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.06 1.34 5.88 -2.38 -0.01 1.33 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 1.20 7.87 -2.39 -0.02 1.18 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.79 8.12 -2.39 -0.02 1.77 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.40 7.81 -2.39 -0.02 1.38 16 43 H 0.07 1.37 8.11 -2.39 -0.02 1.35 16 44 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 48 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 50 H 0.01 0.43 7.36 -2.39 -0.02 0.41 16 51 H 0.01 0.43 7.46 -2.39 -0.02 0.42 16 52 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 53 H 0.11 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -76.47 418.73 2.85 -73.62 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.86 Total: 13.70 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 7.54 Total: 15.92 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -5.77 Total: -110.42 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.80 Total: -41.13 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -76.47 2.85 -73.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225080840.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.617 kcal (2) G-P(sol) polarization free energy of solvation -76.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds