Wall clock time and date at job start Sat Apr 11 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00356 * 2 1 3 5 5 O 1.45199 * 109.47503 * 120.00344 * 2 1 3 6 6 C 1.34639 * 117.00000 * 59.99932 * 5 2 1 7 7 O 1.21511 * 119.99714 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99974 * 180.02562 * 6 5 2 9 9 C 1.47155 * 120.98974 * 359.97438 * 8 6 5 10 10 C 1.53292 * 108.38071 * 230.60338 * 9 8 6 11 11 O 1.42969 * 109.23581 * 307.66979 * 10 9 8 12 12 C 1.42892 * 114.19470 * 62.49154 * 11 10 9 13 13 C 1.52960 * 109.57672 * 177.70809 * 12 11 10 14 14 C 1.52997 * 109.51340 * 299.56226 * 13 12 11 15 15 C 1.53000 * 109.47060 * 300.07539 * 14 13 12 16 16 N 1.46507 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99574 * 155.00276 * 16 15 14 18 18 H 1.07995 * 119.99945 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99339 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00380 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47531 * 89.99912 * 21 19 17 23 23 H 1.48497 * 109.47172 * 210.00245 * 21 19 17 24 24 H 1.48505 * 109.47190 * 329.99945 * 21 19 17 25 25 C 1.53004 * 109.45117 * 60.05665 * 15 14 13 26 26 C 1.52946 * 109.58143 * 57.46052 * 12 11 10 27 27 C 1.47158 * 120.98550 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.46913 * 299.99785 * 1 2 3 29 29 H 1.08998 * 109.47722 * 59.99673 * 1 2 3 30 30 H 1.09002 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47227 * 180.02562 * 3 2 1 32 32 H 1.08989 * 109.47415 * 300.00215 * 3 2 1 33 33 H 1.09001 * 109.47220 * 60.01087 * 3 2 1 34 34 H 1.08993 * 109.47358 * 299.99843 * 4 2 1 35 35 H 1.09002 * 109.47175 * 60.00178 * 4 2 1 36 36 H 1.09000 * 109.47652 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.67603 * 110.88138 * 9 8 6 38 38 H 1.08993 * 109.71282 * 350.34569 * 9 8 6 39 39 H 1.08995 * 109.50854 * 187.74250 * 10 9 8 40 40 H 1.09003 * 109.55201 * 67.62415 * 10 9 8 41 41 H 1.09000 * 109.46397 * 179.54940 * 13 12 11 42 42 H 1.09000 * 109.46093 * 59.57623 * 13 12 11 43 43 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.46832 * 60.07410 * 14 13 12 45 45 H 1.08995 * 109.47704 * 300.06073 * 15 14 13 46 46 H 0.96996 * 120.00207 * 334.99250 * 16 15 14 47 47 H 0.97002 * 119.99331 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.46878 * 59.93585 * 25 15 14 49 49 H 1.08989 * 109.47330 * 179.97438 * 25 15 14 50 50 H 1.09010 * 109.46276 * 300.41250 * 26 12 11 51 51 H 1.09003 * 109.46732 * 180.44203 * 26 12 11 52 52 H 1.09001 * 109.68114 * 9.76268 * 27 8 6 53 53 H 1.09000 * 109.67889 * 249.20775 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 2.9168 -2.0366 3.4409 10 6 4.1252 -2.9458 3.6915 11 8 3.6675 -4.2706 3.9734 12 6 2.9525 -4.8841 2.8991 13 6 2.5637 -6.3107 3.2908 14 6 3.8273 -7.1241 3.5781 15 6 4.7066 -7.1594 2.3266 16 7 5.9163 -7.9388 2.6016 17 6 6.5895 -8.5436 1.5737 18 1 6.2284 -8.4463 0.5606 19 6 7.7360 -9.2816 1.8343 20 7 8.3827 -9.8633 0.8464 21 14 8.3609 -9.4492 3.5866 22 1 7.7474 -10.6447 4.2188 23 1 9.8381 -9.5996 3.5731 24 1 7.9939 -8.2364 4.3611 25 6 5.0974 -5.7321 1.9379 26 6 3.8343 -4.9183 1.6499 27 6 1.6854 -4.0742 2.6053 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2496 37 1 2.3502 -1.9160 4.3642 38 1 3.2568 -1.0627 3.0889 39 1 4.6943 -2.5688 4.5412 40 1 4.7604 -2.9608 2.8058 41 1 2.0115 -6.7741 2.4732 42 1 1.9378 -6.2846 4.1828 43 1 3.5495 -8.1406 3.8568 44 1 4.3787 -6.6615 4.3967 45 1 4.1549 -7.6209 1.5077 46 1 6.2405 -8.0264 3.5116 47 1 9.1840 -10.3787 1.0284 48 1 5.6481 -5.2703 2.7574 49 1 5.7242 -5.7569 1.0467 50 1 4.1126 -3.9011 1.3738 51 1 3.2843 -5.3795 0.8295 52 1 1.2113 -4.4504 1.6988 53 1 0.9940 -4.1580 3.4438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254712930.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:37 Heat of formation + Delta-G solvation = -133.807911 kcal Electronic energy + Delta-G solvation = -32216.377985 eV Core-core repulsion = 28087.613380 eV Total energy + Delta-G solvation = -4128.764605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -42.20827 -41.12836 -38.62725 -37.84219 -36.10649 -35.41682 -34.80328 -33.49440 -31.93338 -31.39950 -29.41101 -28.37181 -28.29701 -27.20372 -24.94335 -24.58937 -23.69518 -22.80836 -21.57286 -20.70825 -20.18726 -19.60087 -19.03877 -17.79516 -17.47259 -17.12925 -16.83697 -16.56334 -16.30893 -16.04600 -15.81588 -15.55402 -15.31395 -14.84451 -14.82669 -14.68127 -14.48023 -14.34972 -14.06085 -13.51349 -13.41590 -13.27842 -13.17238 -13.12495 -13.07333 -12.87064 -12.85874 -12.73849 -12.57915 -12.50294 -12.35806 -12.29586 -12.02936 -11.91351 -11.82971 -11.73323 -11.41037 -11.39636 -11.26811 -11.02092 -10.96582 -10.72975 -9.61607 -9.29261 -8.01816 -5.34521 1.02087 1.38113 1.41531 1.49003 1.70462 2.49271 2.70606 2.76457 3.28662 3.44131 3.69093 3.72312 3.73770 3.77498 3.79336 3.91232 3.94437 4.14402 4.20758 4.23323 4.34221 4.37692 4.51519 4.54776 4.57308 4.58152 4.61037 4.67909 4.69932 4.76025 4.77180 4.82374 4.83985 4.87856 4.91115 4.97929 4.99991 5.09120 5.12154 5.22524 5.26427 5.27586 5.29115 5.36065 5.44057 5.53043 5.58832 5.77987 6.22025 6.22762 6.25325 7.09203 7.20944 7.86525 8.06290 9.20151 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.002686 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.305657 B =10420.562322 C =10875.688366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.182 4.182 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.591 6.591 8 N -0.597 5.597 9 C 0.082 3.918 10 C 0.039 3.961 11 O -0.370 6.370 12 C 0.116 3.884 13 C -0.092 4.092 14 C -0.112 4.112 15 C 0.176 3.824 16 N -0.752 5.752 17 C -0.226 4.226 18 H 0.052 0.948 19 C -0.068 4.068 20 N -0.987 5.987 21 Si 0.958 3.042 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.252 1.252 25 C -0.116 4.116 26 C -0.127 4.127 27 C 0.110 3.890 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.037 0.963 46 H 0.365 0.635 47 H 0.257 0.743 48 H 0.056 0.944 49 H 0.028 0.972 50 H 0.056 0.944 51 H 0.065 0.935 52 H 0.095 0.905 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.248 25.481 6.253 31.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.239 4.239 5 O -0.280 6.280 6 C 0.405 3.595 7 O -0.482 6.482 8 N -0.338 5.338 9 C -0.039 4.039 10 C -0.038 4.038 11 O -0.288 6.288 12 C 0.076 3.924 13 C -0.131 4.131 14 C -0.150 4.150 15 C 0.069 3.931 16 N -0.394 5.394 17 C -0.357 4.357 18 H 0.070 0.930 19 C -0.259 4.259 20 N -0.638 5.638 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.177 1.177 25 C -0.156 4.156 26 C -0.165 4.165 27 C -0.011 4.011 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.198 0.802 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.113 0.887 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.403 25.245 5.904 31.794 hybrid contribution 1.026 -0.479 -0.057 1.134 sum -17.377 24.766 5.847 30.814 Atomic orbital electron populations 1.22451 0.93718 1.03640 1.03658 1.22404 0.94747 0.92659 0.81267 1.21876 1.02324 0.90523 1.04450 1.22487 1.01386 1.02244 0.97791 1.86284 1.71532 1.22876 1.47271 1.18099 0.78673 0.81005 0.81695 1.90890 1.42571 1.70930 1.43787 1.47032 1.53113 1.12149 1.21513 1.22552 0.92014 0.97515 0.91864 1.23137 0.95221 0.82424 1.03018 1.87998 1.73728 1.28890 1.38221 1.21753 0.90118 0.93647 0.86901 1.21454 0.97352 0.90600 1.03653 1.21619 0.96036 1.00285 0.97074 1.20433 0.86374 0.89700 0.96643 1.42816 1.29863 1.61353 1.05409 1.19018 1.04916 1.22722 0.89075 0.93026 1.25528 0.98418 1.00388 1.01571 1.69902 1.21131 1.40097 1.32663 0.85364 0.76846 0.78866 0.80431 1.20253 1.22421 1.17696 1.21900 0.96642 0.97198 0.99903 1.21954 0.96835 0.99640 0.98112 1.22354 0.96818 0.77856 1.04078 0.91659 0.89198 0.92061 0.91445 0.88075 0.90797 0.92174 0.89100 0.92490 0.88590 0.87441 0.85327 0.93615 0.89337 0.88417 0.91373 0.91494 0.94471 0.80195 0.93432 0.92552 0.95303 0.92515 0.91645 0.88710 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.37 71.98 0.60 -2.28 16 2 C 0.13 2.14 1.13 -10.80 -0.01 2.12 16 3 C -0.13 -1.42 8.85 71.98 0.64 -0.78 16 4 C -0.18 -3.41 8.37 71.98 0.60 -2.81 16 5 O -0.37 -7.66 8.58 -55.48 -0.48 -8.14 16 6 C 0.65 15.81 7.75 129.79 1.01 16.82 16 7 O -0.59 -17.17 11.35 19.80 0.22 -16.94 16 8 N -0.60 -12.46 2.54 -947.82 -2.41 -14.87 16 9 C 0.08 1.29 6.65 86.35 0.57 1.87 16 10 C 0.04 0.72 6.60 72.08 0.48 1.19 16 11 O -0.37 -8.50 8.93 -148.98 -1.33 -9.83 16 12 C 0.12 2.67 0.68 -10.75 -0.01 2.67 16 13 C -0.09 -2.05 4.94 30.58 0.15 -1.90 16 14 C -0.11 -3.29 5.25 30.59 0.16 -3.13 16 15 C 0.18 6.79 2.77 44.99 0.12 6.91 16 16 N -0.75 -35.95 4.92 -322.92 -1.59 -37.54 16 17 C -0.23 -13.24 10.41 84.03 0.87 -12.36 16 18 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 19 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 20 N -0.99 -64.72 13.97 21.65 0.30 -64.42 16 21 Si 0.96 46.49 27.73 68.60 1.90 48.40 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 24 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 25 C -0.12 -4.20 5.36 30.59 0.16 -4.04 16 26 C -0.13 -3.64 4.19 30.58 0.13 -3.51 16 27 C 0.11 2.26 5.29 86.33 0.46 2.72 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.11 1.49 7.01 -2.39 -0.02 1.47 16 39 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 0.99 6.26 -2.39 -0.01 0.98 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.00 7.70 -2.39 -0.02 1.99 16 45 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 46 H 0.36 16.74 5.66 -92.71 -0.52 16.21 16 47 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 48 H 0.06 2.04 7.70 -2.39 -0.02 2.02 16 49 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.06 1.63 6.11 -2.38 -0.01 1.61 16 51 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.09 2.17 7.07 -2.39 -0.02 2.15 16 53 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.77 396.75 3.33 -71.44 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.30 Total: 32.07 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.41 Total: -0.16 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -3.70 Total: -116.84 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.58 Total: -34.91 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.40 kcal Total: -74.77 3.33 -71.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254712930.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.372 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds