Wall clock time and date at job start Sat Apr 11 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47139 * 2 1 4 4 H 1.08994 * 110.00145 * 302.38700 * 3 2 1 5 5 C 1.54325 * 109.88480 * 181.28482 * 3 2 1 6 6 H 1.08996 * 110.72227 * 336.93857 * 5 3 2 7 7 N 1.46508 * 110.71742 * 100.02842 * 5 3 2 8 8 C 1.34772 * 119.99978 * 202.55999 * 7 5 3 9 9 O 1.21274 * 120.00350 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99690 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.46911 * 179.97438 * 10 8 7 12 12 O 1.42905 * 109.46943 * 180.02562 * 11 10 8 13 13 C 1.42905 * 113.99800 * 180.02562 * 12 11 10 14 14 C 1.53182 * 109.54368 * 90.43322 * 13 12 11 15 15 C 1.53094 * 109.16030 * 176.83655 * 14 13 12 16 16 O 1.42903 * 109.42184 * 302.40680 * 15 14 13 17 17 C 1.42904 * 114.09822 * 61.15788 * 16 15 14 18 18 C 1.53096 * 109.41220 * 298.83758 * 17 16 15 19 19 C 1.55152 * 103.10432 * 218.48103 * 5 3 2 20 20 C 1.54908 * 101.58068 * 35.41440 * 19 5 3 21 21 N 1.47320 * 110.06030 * 63.55653 * 3 2 1 22 22 C 1.36935 * 125.62066 * 298.24812 * 21 3 2 23 23 H 1.08005 * 119.99746 * 326.22075 * 22 21 3 24 24 C 1.38810 * 120.00557 * 146.21303 * 22 21 3 25 25 N 1.31610 * 120.00199 * 162.09935 * 24 22 21 26 26 Si 1.86807 * 119.99703 * 342.09748 * 24 22 21 27 27 H 1.48504 * 109.46984 * 88.97072 * 26 24 22 28 28 H 1.48501 * 109.46926 * 208.96497 * 26 24 22 29 29 H 1.48501 * 109.47356 * 328.97088 * 26 24 22 30 30 H 1.08993 * 109.47386 * 292.17778 * 1 2 3 31 31 H 1.09006 * 109.47267 * 52.18278 * 1 2 3 32 32 H 1.09004 * 109.46936 * 172.17172 * 1 2 3 33 33 H 1.08999 * 109.47683 * 240.00049 * 2 1 3 34 34 H 1.09000 * 109.47121 * 120.00041 * 2 1 3 35 35 H 0.97000 * 119.99622 * 22.56133 * 7 5 3 36 36 H 1.08999 * 109.47457 * 60.00078 * 10 8 7 37 37 H 1.08997 * 109.47523 * 300.00036 * 10 8 7 38 38 H 1.09008 * 109.47142 * 60.00405 * 11 10 8 39 39 H 1.08994 * 109.47463 * 300.00002 * 11 10 8 40 40 H 1.08996 * 109.54347 * 330.17644 * 13 12 11 41 41 H 1.08997 * 109.51445 * 56.93719 * 14 13 12 42 42 H 1.09002 * 109.52996 * 296.74568 * 14 13 12 43 43 H 1.08999 * 109.47825 * 182.42216 * 15 14 13 44 44 H 1.08995 * 109.47996 * 62.39652 * 15 14 13 45 45 H 1.08993 * 109.48536 * 58.81979 * 17 16 15 46 46 H 1.08996 * 109.47912 * 178.84917 * 17 16 15 47 47 H 1.08993 * 109.51888 * 177.51845 * 18 17 16 48 48 H 1.09003 * 109.52340 * 297.70638 * 18 17 16 49 49 H 1.09001 * 110.99994 * 153.49197 * 19 5 3 50 50 H 1.09003 * 111.00154 * 277.30080 * 19 5 3 51 51 H 1.09006 * 110.36117 * 81.82940 * 20 19 5 52 52 H 1.09004 * 110.36377 * 204.03596 * 20 19 5 53 53 H 0.96999 * 120.00278 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6470 1.9769 -0.8649 5 6 3.5828 1.4538 -0.0325 6 1 3.9835 0.5157 0.3514 7 7 4.0708 1.7063 -1.3907 8 6 5.3130 1.3202 -1.7431 9 8 6.0268 0.7634 -0.9361 10 6 5.8146 1.5794 -3.1403 11 6 7.2426 1.0474 -3.2764 12 8 7.7185 1.2937 -4.6012 13 6 9.0506 0.8323 -4.8354 14 6 9.0101 -0.6087 -5.3535 15 6 10.4347 -1.0669 -5.6762 16 8 11.0138 -0.1791 -6.6347 17 6 11.1210 1.1737 -6.1868 18 6 9.7239 1.7220 -5.8848 19 6 3.9459 2.6322 0.9091 20 6 2.8350 2.5255 1.9834 21 7 1.6274 2.1244 1.2390 22 6 0.3355 2.3464 1.6350 23 1 -0.4300 2.5375 0.8974 24 6 0.0096 2.3258 2.9841 25 7 -1.1140 2.8719 3.3982 26 14 1.1659 1.5228 4.2120 27 1 2.1476 2.5261 4.6967 28 1 0.3831 1.0011 5.3611 29 1 1.8863 0.4029 3.5545 30 1 -0.3634 0.3879 0.9516 31 1 -0.3634 0.6301 -0.8119 32 1 -0.3633 -1.0181 -0.1400 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.4997 2.1513 -2.0362 36 1 5.8066 2.6517 -3.3362 37 1 5.1683 1.0742 -3.8580 38 1 7.2511 -0.0249 -3.0804 39 1 7.8887 1.5530 -2.5588 40 1 9.6186 0.8710 -3.9059 41 1 8.3997 -0.6543 -6.2554 42 1 8.5826 -1.2586 -4.5899 43 1 10.4078 -2.0766 -6.0858 44 1 11.0338 -1.0598 -4.7657 45 1 11.7290 1.2103 -5.2829 46 1 11.5886 1.7780 -6.9641 47 1 9.8068 2.7389 -5.5012 48 1 9.1280 1.7235 -6.7975 49 1 4.9320 2.4894 1.3511 50 1 3.8905 3.5848 0.3821 51 1 3.0941 1.7676 2.7229 52 1 2.6816 3.4900 2.4675 53 1 -1.3415 2.8578 4.3410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316739150.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:44 Heat of formation + Delta-G solvation = -141.082191 kcal Electronic energy + Delta-G solvation = -30208.699863 eV Core-core repulsion = 26079.619821 eV Total energy + Delta-G solvation = -4129.080042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.18264 -40.56581 -39.55469 -38.41313 -35.64767 -34.20943 -34.04926 -33.83741 -32.15174 -32.09892 -30.86682 -28.62835 -26.44080 -25.50044 -24.71932 -24.23614 -23.78281 -22.24260 -21.60830 -21.38957 -20.75114 -18.92842 -18.56519 -17.67321 -17.35782 -17.23923 -17.01691 -16.93074 -16.72695 -16.14443 -15.86471 -15.76151 -15.32602 -15.10720 -14.93606 -14.75395 -14.73620 -14.30952 -14.15594 -14.04872 -13.84916 -13.53704 -13.34369 -13.04711 -12.95151 -12.91427 -12.65785 -12.61514 -12.34520 -12.32744 -12.10914 -12.07545 -11.99157 -11.79652 -11.71898 -11.52059 -11.42938 -11.36540 -10.94510 -10.68145 -10.64348 -10.50172 -10.03496 -8.83224 -8.16856 -5.51682 1.29914 1.38319 1.46986 1.61359 1.91834 2.42074 2.70273 2.95192 3.09022 3.32661 3.66857 3.72397 3.73556 3.77486 3.80392 3.97082 4.03475 4.07784 4.13376 4.17548 4.25292 4.25573 4.37705 4.41954 4.47035 4.50209 4.59068 4.62536 4.67638 4.70378 4.75343 4.80348 4.82281 4.86966 4.88310 4.93878 5.02161 5.03973 5.08678 5.11273 5.16406 5.19688 5.20707 5.37821 5.59923 5.74208 5.87055 6.17216 6.18309 6.21179 6.55771 6.81063 7.23907 7.54812 8.17347 9.02877 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028958 B = 0.001849 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.685909 B =15141.085797 C =15359.268717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.153 3.847 4 H 0.061 0.939 5 C 0.147 3.853 6 H 0.082 0.918 7 N -0.703 5.703 8 C 0.520 3.480 9 O -0.584 6.584 10 C -0.129 4.129 11 C 0.080 3.920 12 O -0.390 6.390 13 C 0.083 3.917 14 C -0.176 4.176 15 C 0.061 3.939 16 O -0.403 6.403 17 C 0.061 3.939 18 C -0.150 4.150 19 C -0.127 4.127 20 C 0.110 3.890 21 N -0.613 5.613 22 C -0.204 4.204 23 H 0.063 0.937 24 C -0.023 4.023 25 N -0.952 5.952 26 Si 0.930 3.070 27 H -0.280 1.280 28 H -0.310 1.310 29 H -0.268 1.268 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.417 0.583 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.013 0.987 52 H 0.045 0.955 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.090 -4.045 -20.710 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C 0.047 3.953 4 H 0.079 0.921 5 C 0.041 3.959 6 H 0.100 0.900 7 N -0.355 5.355 8 C 0.308 3.692 9 O -0.465 6.465 10 C -0.168 4.168 11 C 0.003 3.997 12 O -0.309 6.309 13 C 0.026 3.974 14 C -0.214 4.214 15 C -0.015 4.015 16 O -0.322 6.322 17 C -0.016 4.016 18 C -0.187 4.187 19 C -0.166 4.166 20 C -0.015 4.015 21 N -0.340 5.340 22 C -0.333 4.333 23 H 0.081 0.919 24 C -0.218 4.218 25 N -0.598 5.598 26 Si 0.760 3.240 27 H -0.206 1.206 28 H -0.239 1.239 29 H -0.193 1.193 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.255 0.745 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.132 0.868 47 H 0.107 0.893 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.105 0.895 51 H 0.031 0.969 52 H 0.063 0.937 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.355 -4.355 -20.326 31.266 hybrid contribution -0.438 -0.223 1.625 1.698 sum 22.917 -4.577 -18.701 29.931 Atomic orbital electron populations 1.21788 0.95895 1.00114 1.02535 1.21836 0.96645 0.96961 1.00497 1.21448 0.91162 0.92422 0.90265 0.92121 1.21727 0.93260 0.98271 0.82640 0.90001 1.45830 1.15710 1.60688 1.13251 1.20873 0.81096 0.77062 0.90191 1.90703 1.57000 1.44157 1.54599 1.21421 0.96665 1.05940 0.92790 1.22092 0.94337 0.99771 0.83469 1.87838 1.30765 1.81746 1.30572 1.22243 0.83255 0.93569 0.98369 1.22703 0.99031 0.97070 1.02634 1.22661 0.91591 0.94239 0.93023 1.87922 1.82226 1.19489 1.42530 1.22733 0.94959 0.82469 1.01411 1.22285 0.97056 1.00152 0.99239 1.23020 0.97622 0.99260 0.96692 1.21947 0.87384 0.97380 0.94807 1.44862 1.00956 1.65373 1.22762 1.18292 0.84275 1.39541 0.91217 0.91946 1.25841 0.96934 1.00100 0.98943 1.69889 1.26664 1.47661 1.15538 0.86062 0.78659 0.80208 0.79033 1.20634 1.23886 1.19331 0.92895 0.93298 0.93194 0.90666 0.94471 0.74537 0.85935 0.85984 0.93256 0.93147 0.91545 0.90934 0.90388 0.87460 0.92083 0.91932 0.86816 0.89252 0.90884 0.90441 0.89549 0.96934 0.93670 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.03 71.98 0.65 -4.73 16 2 C -0.12 -4.10 5.49 30.59 0.17 -3.94 16 3 C 0.15 5.30 3.03 45.29 0.14 5.44 16 4 H 0.06 1.97 7.70 -2.39 -0.02 1.95 16 5 C 0.15 4.41 2.79 46.18 0.13 4.53 16 6 H 0.08 2.74 7.33 -2.39 -0.02 2.73 16 7 N -0.70 -15.38 5.19 -436.92 -2.27 -17.65 16 8 C 0.52 11.71 7.83 87.66 0.69 12.39 16 9 O -0.58 -18.11 15.67 -3.01 -0.05 -18.15 16 10 C -0.13 -1.93 6.07 29.85 0.18 -1.75 16 11 C 0.08 1.41 5.04 71.98 0.36 1.78 16 12 O -0.39 -6.77 10.00 -148.98 -1.49 -8.26 16 13 C 0.08 1.20 2.70 30.71 0.08 1.28 16 14 C -0.18 -2.36 5.76 30.69 0.18 -2.19 16 15 C 0.06 0.72 6.84 72.01 0.49 1.21 16 16 O -0.40 -6.04 10.77 -148.98 -1.60 -7.65 16 17 C 0.06 0.63 6.84 72.01 0.49 1.13 16 18 C -0.15 -1.78 5.79 30.68 0.18 -1.61 16 19 C -0.13 -4.01 6.77 31.98 0.22 -3.80 16 20 C 0.11 4.51 4.98 86.85 0.43 4.95 16 21 N -0.61 -27.16 2.73 -667.54 -1.82 -28.98 16 22 C -0.20 -10.86 7.36 84.03 0.62 -10.24 16 23 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 24 C -0.02 -1.28 5.45 84.86 0.46 -0.82 16 25 N -0.95 -58.22 13.97 21.65 0.30 -57.92 16 26 Si 0.93 46.66 24.71 68.60 1.69 48.35 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.31 -15.87 7.11 99.48 0.71 -15.17 16 29 H -0.27 -13.13 6.77 99.48 0.67 -12.45 16 30 H 0.05 2.42 5.60 -2.39 -0.01 2.41 16 31 H 0.05 1.70 8.13 -2.38 -0.02 1.68 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.42 6.73 8.34 -92.71 -0.77 5.96 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 0.94 7.95 -2.38 -0.02 0.92 16 39 H 0.05 0.96 8.04 -2.39 -0.02 0.94 16 40 H 0.07 0.90 7.79 -2.39 -0.02 0.88 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.01 7.99 -2.39 -0.02 0.99 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 51 H 0.01 0.56 5.29 -2.38 -0.01 0.55 16 52 H 0.04 1.96 7.99 -2.38 -0.02 1.94 16 53 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -69.85 408.06 0.31 -69.54 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.07 Total: 17.08 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.47 Total: 3.64 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -3.79 Total: -104.55 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -3.14 Total: -34.06 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.69 Total: 48.35 kcal Total: -69.85 0.31 -69.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316739150.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.544 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds