Wall clock time and date at job start Sat Apr 11 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46945 * 2 1 4 4 C 1.53001 * 109.47084 * 240.00372 * 2 1 3 5 5 O 1.45203 * 109.46950 * 120.00256 * 2 1 3 6 6 C 1.34632 * 117.00195 * 60.00165 * 5 2 1 7 7 O 1.21511 * 119.99765 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00204 * 180.02562 * 6 5 2 9 9 C 1.46507 * 120.00290 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.46577 * 325.00046 * 9 8 6 11 11 C 1.52998 * 109.46906 * 84.99736 * 9 8 6 12 12 C 1.53003 * 109.46809 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46917 * 299.99904 * 12 11 9 14 14 C 1.52998 * 109.47306 * 60.00001 * 13 12 11 15 15 C 1.52995 * 109.47239 * 300.00068 * 14 13 12 16 16 H 1.09003 * 109.47408 * 300.00173 * 15 14 13 17 17 C 1.50698 * 109.47490 * 179.97438 * 15 14 13 18 18 O 1.21283 * 120.00472 * 240.00297 * 17 15 14 19 19 N 1.34777 * 119.99538 * 59.99635 * 17 15 14 20 20 C 1.46499 * 119.99665 * 179.72653 * 19 17 15 21 21 C 1.53004 * 109.47198 * 180.27868 * 20 19 17 22 22 C 1.50700 * 109.47208 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99770 * 359.97438 * 22 21 20 24 24 C 1.37876 * 119.99720 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00513 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 119.99651 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47037 * 59.99882 * 26 24 22 28 28 H 1.48501 * 109.46667 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47133 * 299.99829 * 26 24 22 30 30 H 1.09000 * 109.47622 * 299.99954 * 1 2 3 31 31 H 1.09003 * 109.47391 * 59.99771 * 1 2 3 32 32 H 1.09002 * 109.47109 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47083 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47160 * 300.00084 * 3 2 1 35 35 H 1.08999 * 109.46677 * 60.00105 * 3 2 1 36 36 H 1.09002 * 109.47060 * 299.99923 * 4 2 1 37 37 H 1.09003 * 109.47124 * 59.99692 * 4 2 1 38 38 H 1.09003 * 109.47090 * 179.97438 * 4 2 1 39 39 H 0.97002 * 120.00063 * 359.97438 * 8 6 5 40 40 H 1.09001 * 109.47077 * 299.99845 * 11 9 8 41 41 H 1.08995 * 109.47540 * 60.00057 * 11 9 8 42 42 H 1.08995 * 109.47357 * 60.00111 * 12 11 9 43 43 H 1.09003 * 109.47092 * 180.02562 * 12 11 9 44 44 H 1.09001 * 109.47054 * 179.97438 * 13 12 11 45 45 H 1.09009 * 109.46941 * 299.99854 * 13 12 11 46 46 H 1.09001 * 109.47080 * 180.02562 * 14 13 12 47 47 H 1.08995 * 109.46745 * 59.99930 * 14 13 12 48 48 H 0.97001 * 120.00485 * 0.02562 * 19 17 15 49 49 H 1.09009 * 109.47454 * 300.27637 * 20 19 17 50 50 H 1.08998 * 109.47492 * 60.27932 * 20 19 17 51 51 H 1.08995 * 109.46638 * 300.00121 * 21 20 19 52 52 H 1.09006 * 109.47139 * 60.00254 * 21 20 19 53 53 H 0.96999 * 120.00239 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0671 -2.6655 2.4170 9 6 1.6740 -4.0670 2.5830 10 1 0.6652 -4.2096 2.1954 11 6 2.6469 -4.9639 1.8150 12 6 2.2359 -6.4276 1.9877 13 6 2.2680 -6.7943 3.4728 14 6 1.2951 -5.8974 4.2408 15 6 1.7060 -4.4338 4.0680 16 1 2.7148 -4.2914 4.4557 17 6 0.7475 -3.5502 4.8239 18 8 0.1025 -2.7100 4.2331 19 7 0.6068 -3.6938 6.1566 20 6 -0.3206 -2.8309 6.8924 21 6 -0.2850 -3.1938 8.3784 22 6 -1.2395 -2.3065 9.1352 23 1 -1.8137 -1.5583 8.6090 24 6 -1.3796 -2.4499 10.4993 25 7 -0.6800 -3.3607 11.1401 26 14 -2.5623 -1.3496 11.4375 27 1 -3.9383 -1.5413 10.9134 28 1 -2.5277 -1.7020 12.8797 29 1 -2.1603 0.0696 11.2655 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 2.6267 -2.2366 3.0833 40 1 2.6237 -4.7029 0.7569 41 1 3.6557 -4.8213 2.2024 42 1 1.2273 -6.5699 1.6000 43 1 2.9293 -7.0666 1.4410 44 1 1.9748 -7.8369 3.5959 45 1 3.2768 -6.6520 3.8605 46 1 1.3183 -6.1584 5.2988 47 1 0.2865 -6.0398 3.8531 48 1 1.1228 -4.3656 6.6293 49 1 -0.0258 -1.7891 6.7657 50 1 -1.3308 -2.9719 6.5081 51 1 -0.5798 -4.2354 8.5051 52 1 0.7252 -3.0526 8.7628 53 1 -0.7789 -3.4619 12.0997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323716394.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:26 Heat of formation + Delta-G solvation = -175.640701 kcal Electronic energy + Delta-G solvation = -31081.174726 eV Core-core repulsion = 26950.596115 eV Total energy + Delta-G solvation = -4130.578611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -42.00187 -41.14577 -39.12673 -37.81015 -36.59725 -35.52647 -34.87635 -34.55466 -32.60408 -31.04109 -30.36269 -28.36963 -28.29746 -26.90570 -24.69687 -24.34761 -22.93907 -22.37879 -21.44455 -21.36293 -20.59309 -19.13711 -18.59314 -18.10498 -17.74330 -17.10324 -16.91334 -16.53882 -16.48527 -16.24316 -15.65322 -15.42567 -15.24199 -15.12062 -14.90142 -14.56005 -14.50721 -14.33709 -14.07459 -13.65959 -13.45641 -13.31776 -13.20597 -13.11324 -12.93592 -12.89926 -12.85858 -12.58370 -12.54469 -12.35515 -12.31779 -12.22085 -12.21384 -11.86955 -11.66473 -11.50754 -11.46950 -11.37580 -11.27720 -11.02405 -10.71289 -10.60867 -10.06297 -9.98472 -8.25256 -6.35526 1.21649 1.40496 1.42270 1.50370 1.66639 1.86448 2.23289 2.43965 3.09395 3.15447 3.43223 3.62757 3.75791 3.80270 3.89753 3.94984 4.11273 4.17348 4.25283 4.30133 4.40992 4.45462 4.48151 4.52596 4.54654 4.60832 4.72904 4.75247 4.82293 4.83263 4.84520 4.86898 4.90791 5.02716 5.10417 5.15481 5.18517 5.25798 5.27988 5.29802 5.32585 5.35510 5.42282 5.49131 5.54352 5.58118 5.62100 5.78177 6.15813 6.43045 6.65294 6.77306 7.31339 7.33717 7.40556 8.86164 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.002722 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.245784 B =10282.582325 C =12593.208286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.174 4.174 5 O -0.376 6.376 6 C 0.652 3.348 7 O -0.595 6.595 8 N -0.690 5.690 9 C 0.188 3.812 10 H 0.061 0.939 11 C -0.120 4.120 12 C -0.116 4.116 13 C -0.112 4.112 14 C -0.108 4.108 15 C -0.103 4.103 16 H 0.135 0.865 17 C 0.504 3.496 18 O -0.581 6.581 19 N -0.714 5.714 20 C 0.143 3.857 21 C 0.025 3.975 22 C -0.550 4.550 23 H 0.055 0.945 24 C 0.010 3.990 25 N -0.924 5.924 26 Si 0.961 3.039 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.269 1.269 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.407 0.593 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.411 0.589 49 H 0.042 0.958 50 H 0.039 0.961 51 H 0.009 0.991 52 H 0.011 0.989 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.379 -2.385 -22.529 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.231 4.231 5 O -0.291 6.291 6 C 0.405 3.595 7 O -0.486 6.486 8 N -0.347 5.347 9 C 0.084 3.916 10 H 0.079 0.921 11 C -0.159 4.159 12 C -0.154 4.154 13 C -0.149 4.149 14 C -0.146 4.146 15 C -0.124 4.124 16 H 0.152 0.848 17 C 0.291 3.709 18 O -0.460 6.460 19 N -0.365 5.365 20 C 0.019 3.981 21 C -0.012 4.012 22 C -0.588 4.588 23 H 0.073 0.927 24 C -0.189 4.189 25 N -0.564 5.564 26 Si 0.786 3.214 27 H -0.195 1.195 28 H -0.204 1.204 29 H -0.194 1.194 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.243 0.757 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.247 0.753 49 H 0.061 0.939 50 H 0.058 0.942 51 H 0.028 0.972 52 H 0.029 0.971 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.588 -2.042 -23.218 26.029 hybrid contribution -0.670 0.579 1.344 1.609 sum 10.918 -1.463 -21.874 24.491 Atomic orbital electron populations 1.22466 0.94821 1.03376 1.03046 1.22406 0.94055 0.92939 0.81893 1.21883 1.02589 0.90690 1.04066 1.22430 1.01732 1.02127 0.96838 1.86301 1.71663 1.23451 1.47645 1.18152 0.78291 0.80530 0.82525 1.90844 1.42026 1.71108 1.44630 1.44612 1.54608 1.12502 1.22949 1.20702 0.99184 0.77940 0.93787 0.92105 1.21914 0.99243 0.95008 0.99707 1.21531 1.01984 0.94473 0.97377 1.21561 0.99943 0.99429 0.93967 1.21569 1.00267 0.90125 1.02674 1.21723 1.00570 0.96511 0.93641 0.84764 1.21246 0.83377 0.84069 0.82202 1.90718 1.48594 1.37794 1.68939 1.46123 1.44117 1.38593 1.07681 1.21153 0.91537 0.92950 0.92491 1.19105 0.96495 0.96276 0.89333 1.21439 1.24718 1.19261 0.93393 0.92679 1.25822 0.97608 0.96842 0.98643 1.70033 1.42094 1.34811 1.09425 0.85555 0.79275 0.79186 0.77386 1.19520 1.20400 1.19416 0.93281 0.88734 0.92320 0.90746 0.87697 0.92060 0.91936 0.89000 0.91518 0.75741 0.92544 0.89410 0.92753 0.89518 0.89873 0.89545 0.89370 0.92485 0.75294 0.93929 0.94233 0.97233 0.97113 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.41 8.37 71.98 0.60 -3.81 16 2 C 0.12 2.78 1.13 -10.79 -0.01 2.77 16 3 C -0.14 -2.13 8.85 71.98 0.64 -1.50 16 4 C -0.17 -3.43 8.37 71.98 0.60 -2.83 16 5 O -0.38 -10.62 9.94 -55.41 -0.55 -11.17 16 6 C 0.65 19.99 8.02 129.79 1.04 21.03 16 7 O -0.59 -20.53 11.54 19.81 0.23 -20.30 16 8 N -0.69 -18.09 3.87 -570.14 -2.21 -20.29 16 9 C 0.19 4.43 1.45 44.99 0.07 4.49 16 10 H 0.06 1.90 7.53 -2.39 -0.02 1.88 16 11 C -0.12 -2.06 5.49 30.59 0.17 -1.89 16 12 C -0.12 -1.57 5.92 30.60 0.18 -1.38 16 13 C -0.11 -1.29 5.92 30.59 0.18 -1.11 16 14 C -0.11 -1.82 5.10 30.59 0.16 -1.67 16 15 C -0.10 -2.13 2.11 -11.54 -0.02 -2.16 16 16 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 17 C 0.50 15.88 6.99 87.66 0.61 16.49 16 18 O -0.58 -23.78 15.20 -3.04 -0.05 -23.83 16 19 N -0.71 -23.41 5.45 -463.05 -2.52 -25.93 16 20 C 0.14 6.10 5.61 86.38 0.48 6.58 16 21 C 0.03 1.26 5.09 29.85 0.15 1.41 16 22 C -0.55 -30.73 9.11 25.60 0.23 -30.50 16 23 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 24 C 0.01 0.55 5.46 84.65 0.46 1.02 16 25 N -0.92 -53.67 13.29 21.45 0.28 -53.38 16 26 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 29 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.81 5.88 -2.39 -0.01 1.80 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.41 9.48 8.71 -92.71 -0.81 8.67 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.09 1.34 7.56 -2.39 -0.02 1.33 16 47 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.41 11.16 7.89 -92.71 -0.73 10.43 16 49 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 50 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 52 H 0.01 0.54 8.14 -2.38 -0.02 0.53 16 53 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -74.00 417.37 2.11 -71.89 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.65 Total: 30.45 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.54 Total: 6.96 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -4.45 Total: -99.61 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -0.37 Total: -55.30 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.00 2.11 -71.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323716394.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.754 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds