Wall clock time and date at job start Sat Apr 11 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46500 * 119.99732 * 2 1 4 4 C 1.50695 * 109.47109 * 89.99819 * 3 2 1 5 5 H 1.07995 * 120.00496 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99572 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99951 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 59.99744 * 8 6 4 10 10 H 1.48503 * 109.47261 * 299.99924 * 8 6 4 11 11 H 1.48500 * 109.47454 * 179.97438 * 8 6 4 12 12 C 1.34774 * 119.99995 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00096 * 179.97438 * 12 2 1 14 14 C 1.50701 * 120.00042 * 0.02562 * 12 2 1 15 15 C 1.53006 * 109.46983 * 179.97438 * 14 12 2 16 16 H 1.09004 * 110.01614 * 305.70467 * 15 14 12 17 17 C 1.53876 * 110.03013 * 67.09069 * 15 14 12 18 18 C 1.54269 * 106.59542 * 119.28630 * 17 15 14 19 19 C 1.54888 * 104.19702 * 23.60780 * 18 17 15 20 20 H 1.09002 * 110.75947 * 80.55405 * 19 18 17 21 21 N 1.46497 * 110.75723 * 203.74225 * 19 18 17 22 22 C 1.34769 * 120.00055 * 273.54685 * 21 19 18 23 23 O 1.21511 * 120.00355 * 0.02562 * 22 21 19 24 24 O 1.34647 * 119.99942 * 180.02562 * 22 21 19 25 25 C 1.45202 * 116.99760 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.47284 * 59.99917 * 25 24 22 27 27 C 1.52997 * 109.46789 * 179.97438 * 25 24 22 28 28 C 1.52999 * 109.46895 * 299.99321 * 25 24 22 29 29 C 1.54259 * 110.02909 * 184.31028 * 15 14 12 30 30 H 1.08996 * 109.46959 * 90.00530 * 1 2 3 31 31 H 1.09001 * 109.46865 * 210.00253 * 1 2 3 32 32 H 1.08994 * 109.46989 * 330.00240 * 1 2 3 33 33 H 1.09002 * 109.47129 * 329.99653 * 3 2 1 34 34 H 1.08998 * 109.46845 * 210.00459 * 3 2 1 35 35 H 0.97006 * 119.99995 * 359.97438 * 7 6 4 36 36 H 1.08993 * 109.47055 * 299.99755 * 14 12 2 37 37 H 1.09000 * 109.47220 * 60.00306 * 14 12 2 38 38 H 1.09000 * 110.02858 * 238.56810 * 17 15 14 39 39 H 1.08993 * 110.03264 * 0.02562 * 17 15 14 40 40 H 1.08997 * 110.49023 * 142.28682 * 18 17 15 41 41 H 1.09001 * 110.48750 * 264.93183 * 18 17 15 42 42 H 0.97007 * 120.00178 * 93.54957 * 21 19 18 43 43 H 1.08994 * 109.47037 * 59.99789 * 26 25 24 44 44 H 1.09003 * 109.46633 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.46814 * 299.99724 * 26 25 24 46 46 H 1.08998 * 109.47345 * 59.99786 * 27 25 24 47 47 H 1.09001 * 109.47041 * 179.97438 * 27 25 24 48 48 H 1.09003 * 109.47372 * 299.99929 * 27 25 24 49 49 H 1.08998 * 109.46932 * 60.01056 * 28 25 24 50 50 H 1.09001 * 109.46780 * 180.02562 * 28 25 24 51 51 H 1.08998 * 109.47498 * 300.00373 * 28 25 24 52 52 H 1.08993 * 110.49016 * 335.78181 * 29 15 14 53 53 H 1.09002 * 110.48875 * 98.43117 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0963 2.2417 6 6 3.1268 2.8776 1.6726 7 7 3.5541 3.6177 0.6730 8 14 3.4388 3.4166 3.4337 9 1 4.2412 2.3813 4.1336 10 1 2.1414 3.5945 4.1341 11 1 4.1822 4.7021 3.4337 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6352 0.0005 16 1 3.0766 -3.5304 -0.8312 17 6 3.1500 -3.6701 1.3322 18 6 2.8361 -5.0311 1.9873 19 6 2.4297 -5.9393 0.8002 20 1 3.3117 -6.3157 0.2822 21 7 1.5871 -7.0466 1.2585 22 6 2.1543 -8.1827 1.7101 23 8 3.3645 -8.2885 1.7376 24 8 1.3799 -9.2007 2.1308 25 6 2.0591 -10.3935 2.6044 26 6 2.9492 -10.0344 3.7959 27 6 1.0228 -11.4324 3.0375 28 6 2.9208 -10.9703 1.4795 29 6 1.6247 -4.9760 -0.1084 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6084 2.0284 -0.5139 34 1 3.1499 1.1384 -0.5139 35 1 3.3925 3.3376 -0.2416 36 1 0.7585 -2.5298 0.8902 37 1 0.7592 -2.5303 -0.8897 38 1 4.2206 -3.5831 1.1466 39 1 2.8152 -2.8589 1.9785 40 1 3.7206 -5.4277 2.4856 41 1 2.0110 -4.9335 2.6928 42 1 0.6210 -6.9622 1.2369 43 1 2.3352 -9.6235 4.5973 44 1 3.4587 -10.9300 4.1517 45 1 3.6874 -9.2941 3.4878 46 1 0.3883 -11.6883 2.1889 47 1 1.5326 -12.3280 3.3926 48 1 0.4090 -11.0212 3.8390 49 1 3.6592 -10.2300 1.1714 50 1 3.4303 -11.8659 1.8349 51 1 2.2867 -11.2261 0.6306 52 1 0.6038 -4.8698 0.2583 53 1 1.6259 -5.3319 -1.1387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361851314.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:18 Heat of formation + Delta-G solvation = -163.730043 kcal Electronic energy + Delta-G solvation = -30265.644332 eV Core-core repulsion = 26135.582206 eV Total energy + Delta-G solvation = -4130.062126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.84411 -40.97170 -39.51130 -37.86276 -36.70403 -35.51165 -34.96708 -34.56520 -31.87463 -29.65918 -29.14864 -28.35251 -28.27452 -27.44596 -26.44914 -24.63000 -23.67920 -21.70614 -21.37591 -20.78105 -19.85455 -19.17758 -19.01837 -17.79929 -17.73506 -17.32145 -17.11903 -16.62758 -16.50076 -16.11117 -15.65670 -15.59911 -15.34691 -14.95440 -14.61797 -14.40800 -14.28235 -14.00592 -13.72462 -13.55672 -13.44822 -13.32422 -13.27530 -13.08865 -13.04958 -12.89228 -12.84362 -12.77172 -12.69176 -12.49194 -12.34774 -12.24248 -12.09394 -11.97662 -11.83888 -11.63462 -11.39515 -11.36665 -11.18893 -11.09045 -10.62961 -10.57400 -10.15852 -9.42552 -8.69537 -6.45949 1.17430 1.47337 1.56628 1.75789 1.78193 1.86117 2.35197 2.53208 3.08689 3.14169 3.49856 3.55620 3.77066 3.79712 3.81916 3.94537 3.96738 4.20028 4.26762 4.37187 4.42297 4.47815 4.56029 4.58872 4.62633 4.63321 4.66409 4.74642 4.78090 4.78453 4.82838 4.85078 4.86072 4.89875 4.93502 4.94454 5.02623 5.07560 5.13063 5.18092 5.29496 5.32084 5.36758 5.44247 5.48418 5.58055 5.62780 5.82115 6.14110 6.44032 6.45989 6.74939 7.30199 7.39035 7.48341 8.64387 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.001938 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.004161 B =14445.671071 C =15078.425814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.245 3.755 4 C -0.614 4.614 5 H 0.045 0.955 6 C -0.035 4.035 7 N -0.932 5.932 8 Si 1.118 2.882 9 H -0.281 1.281 10 H -0.260 1.260 11 H -0.280 1.280 12 C 0.489 3.511 13 O -0.596 6.596 14 C -0.116 4.116 15 C -0.070 4.070 16 H 0.063 0.937 17 C -0.106 4.106 18 C -0.127 4.127 19 C 0.163 3.837 20 H 0.081 0.919 21 N -0.689 5.689 22 C 0.644 3.356 23 O -0.595 6.595 24 O -0.367 6.367 25 C 0.125 3.875 26 C -0.181 4.181 27 C -0.135 4.135 28 C -0.180 4.180 29 C -0.105 4.105 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.016 0.984 34 H -0.010 1.010 35 H 0.255 0.745 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.420 0.580 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.064 0.936 52 H 0.108 0.892 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -30.883 1.890 33.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.122 3.878 4 C -0.652 4.652 5 H 0.063 0.937 6 C -0.233 4.233 7 N -0.569 5.569 8 Si 0.939 3.061 9 H -0.207 1.207 10 H -0.184 1.184 11 H -0.205 1.205 12 C 0.279 3.721 13 O -0.477 6.477 14 C -0.156 4.156 15 C -0.089 4.089 16 H 0.082 0.918 17 C -0.145 4.145 18 C -0.166 4.166 19 C 0.059 3.941 20 H 0.099 0.901 21 N -0.349 5.349 22 C 0.397 3.603 23 O -0.486 6.486 24 O -0.282 6.282 25 C 0.089 3.911 26 C -0.238 4.238 27 C -0.192 4.192 28 C -0.237 4.237 29 C -0.143 4.143 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.008 0.992 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.257 0.743 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.118 0.882 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.107 0.893 51 H 0.083 0.917 52 H 0.126 0.874 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.232 -29.827 2.830 31.997 hybrid contribution -0.229 -0.405 -1.107 1.201 sum -11.461 -30.232 1.723 32.377 Atomic orbital electron populations 1.21944 0.77682 1.04064 1.02641 1.48090 1.08416 1.06059 1.71846 1.18830 0.90862 0.81837 0.96244 1.22530 1.40315 1.09440 0.92951 0.93679 1.27374 0.92748 0.93760 1.09373 1.70927 1.45604 1.40385 0.99962 0.82935 0.77712 0.76024 0.69473 1.20716 1.18438 1.20470 1.21672 0.88045 0.86812 0.75584 1.90644 1.16787 1.88158 1.52095 1.21865 0.98641 0.88625 1.06424 1.21384 0.96265 0.93654 0.97608 0.91806 1.21960 0.99687 0.96307 0.96532 1.22716 1.01486 0.94347 0.98071 1.21869 0.93634 0.84211 0.94377 0.90080 1.44651 1.11351 1.12176 1.66676 1.18350 0.83866 0.81276 0.76801 1.90912 1.14462 1.82581 1.60669 1.86309 1.40606 1.24888 1.76399 1.22382 0.93484 0.81263 0.93954 1.22478 1.00425 1.03749 0.97173 1.21878 0.98062 0.96730 1.02543 1.22470 1.00566 1.02377 0.98279 1.22610 0.99856 0.91231 1.00559 0.90971 0.88132 0.92241 0.96637 0.99166 0.93612 0.86671 0.85712 0.94054 0.93579 0.92986 0.90127 0.74269 0.92021 0.89270 0.92236 0.90970 0.88164 0.91193 0.92160 0.89309 0.91720 0.87391 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 10.24 127.77 1.31 3.52 16 2 N -0.61 -25.51 2.86 -851.13 -2.43 -27.94 16 3 C 0.24 13.25 4.47 85.63 0.38 13.63 16 4 C -0.61 -36.10 9.39 25.60 0.24 -35.86 16 5 H 0.04 2.64 7.81 -2.91 -0.02 2.61 16 6 C -0.03 -2.05 5.46 84.66 0.46 -1.59 16 7 N -0.93 -58.85 13.65 21.45 0.29 -58.56 16 8 Si 1.12 51.93 29.90 68.60 2.05 53.98 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.49 19.49 7.21 87.66 0.63 20.12 16 13 O -0.60 -30.36 14.68 -3.04 -0.04 -30.40 16 14 C -0.12 -2.75 3.40 29.85 0.10 -2.65 16 15 C -0.07 -1.64 2.55 -10.07 -0.03 -1.67 16 16 H 0.06 1.78 7.95 -2.39 -0.02 1.76 16 17 C -0.11 -3.07 5.37 31.32 0.17 -2.90 16 18 C -0.13 -2.93 6.51 31.67 0.21 -2.73 16 19 C 0.16 3.07 3.18 46.31 0.15 3.22 16 20 H 0.08 1.86 7.70 -2.39 -0.02 1.84 16 21 N -0.69 -11.30 5.21 -563.84 -2.94 -14.24 16 22 C 0.64 14.04 8.05 129.79 1.05 15.08 16 23 O -0.60 -16.65 11.61 19.81 0.23 -16.42 16 24 O -0.37 -6.90 9.94 -55.56 -0.55 -7.45 16 25 C 0.13 1.93 1.13 -10.80 -0.01 1.92 16 26 C -0.18 -2.97 8.37 71.98 0.60 -2.37 16 27 C -0.14 -1.20 8.85 71.98 0.64 -0.57 16 28 C -0.18 -2.78 8.37 71.98 0.60 -2.18 16 29 C -0.10 -1.49 5.97 31.70 0.19 -1.30 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.98 6.44 -2.39 -0.02 1.97 16 32 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 33 H 0.02 0.85 7.94 -2.39 -0.02 0.83 16 34 H -0.01 -0.60 7.29 -2.39 -0.02 -0.62 16 35 H 0.25 16.27 7.22 -92.70 -0.67 15.60 16 36 H 0.12 2.18 7.40 -2.39 -0.02 2.16 16 37 H 0.12 2.06 8.11 -2.39 -0.02 2.04 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.52 7.36 -2.39 -0.02 1.51 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.42 4.31 8.64 -92.70 -0.80 3.51 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 46 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 1.31 5.88 -2.39 -0.01 1.30 16 50 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.11 0.92 7.73 -2.39 -0.02 0.90 16 53 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -83.95 416.82 3.48 -80.47 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.19 Total: 16.88 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 6.69 Total: 3.68 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -5.08 Total: -100.74 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -0.37 Total: -54.28 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Total: -83.95 3.48 -80.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361851314.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.257 kcal (2) G-P(sol) polarization free energy of solvation -83.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds