Wall clock time and date at job start Sat Apr 11 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47382 * 2 1 4 4 C 1.53000 * 109.47364 * 239.99342 * 2 1 3 5 5 O 1.45204 * 109.47056 * 119.99780 * 2 1 3 6 6 C 1.34639 * 116.99883 * 59.99822 * 5 2 1 7 7 O 1.21502 * 120.00309 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99662 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99677 * 185.05224 * 8 6 5 10 10 C 1.52993 * 109.47435 * 269.99666 * 9 8 6 11 11 C 1.52998 * 109.47463 * 180.02562 * 10 9 8 12 12 N 1.46900 * 109.47192 * 180.02562 * 11 10 9 13 13 C 1.47483 * 110.99727 * 169.99662 * 12 11 10 14 14 C 1.53512 * 87.99307 * 138.67636 * 13 12 11 15 15 O 1.42898 * 114.17363 * 87.65222 * 14 13 12 16 16 C 1.50706 * 114.16949 * 220.36008 * 14 13 12 17 17 H 1.07999 * 119.99911 * 0.02562 * 16 14 13 18 18 C 1.37878 * 120.00113 * 179.97438 * 16 14 13 19 19 N 1.31518 * 119.99751 * 0.02562 * 18 16 14 20 20 Si 1.86789 * 120.00146 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47291 * 90.00099 * 20 18 16 22 22 H 1.48507 * 109.47340 * 210.00280 * 20 18 16 23 23 H 1.48503 * 109.47262 * 330.00017 * 20 18 16 24 24 C 1.47477 * 110.99984 * 265.96801 * 12 11 10 25 25 C 1.46502 * 120.00163 * 5.04726 * 8 6 5 26 26 C 1.52993 * 117.49873 * 182.78332 * 25 8 6 27 27 C 1.52995 * 60.00355 * 252.51444 * 26 25 8 28 28 H 1.09000 * 109.47093 * 300.00891 * 1 2 3 29 29 H 1.09000 * 109.46698 * 59.99961 * 1 2 3 30 30 H 1.08999 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46730 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46603 * 299.99409 * 3 2 1 33 33 H 1.08995 * 109.47096 * 59.99815 * 3 2 1 34 34 H 1.08999 * 109.47161 * 300.00382 * 4 2 1 35 35 H 1.09008 * 109.46691 * 60.00270 * 4 2 1 36 36 H 1.08999 * 109.47568 * 179.97438 * 4 2 1 37 37 H 1.09004 * 109.46869 * 149.99465 * 9 8 6 38 38 H 1.09001 * 109.47139 * 30.00588 * 9 8 6 39 39 H 1.09007 * 109.46772 * 59.99902 * 10 9 8 40 40 H 1.09005 * 109.47002 * 300.00732 * 10 9 8 41 41 H 1.09004 * 109.46979 * 59.99715 * 11 10 9 42 42 H 1.09002 * 109.46783 * 300.00102 * 11 10 9 43 43 H 1.08998 * 113.47857 * 253.46820 * 13 12 11 44 44 H 1.08994 * 113.47757 * 23.88233 * 13 12 11 45 45 H 0.96694 * 114.00116 * 179.97438 * 15 14 13 46 46 H 0.97007 * 119.99930 * 180.02562 * 19 18 16 47 47 H 1.08994 * 113.47877 * 336.06893 * 24 12 11 48 48 H 1.09002 * 113.47104 * 106.47166 * 24 12 11 49 49 H 1.08996 * 115.55085 * 328.50141 * 25 8 6 50 50 H 1.09003 * 117.49921 * 0.02562 * 26 25 8 51 51 H 1.09000 * 117.50027 * 145.02450 * 26 25 8 52 52 H 1.08992 * 117.50156 * 252.50941 * 27 26 25 53 53 H 1.09004 * 117.51452 * 107.47920 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5038 8 7 2.0671 -2.6653 2.4173 9 6 1.7671 -4.0949 2.5294 10 6 0.4272 -4.2803 3.2443 11 6 0.1142 -5.7733 3.3619 12 7 -1.1726 -5.9513 4.0478 13 6 -1.6231 -7.3535 3.9707 14 6 -2.0641 -7.2359 5.4364 15 8 -3.3933 -6.7407 5.6096 16 6 -1.7669 -8.4557 6.2700 17 1 -1.2827 -9.3109 5.8222 18 6 -2.1121 -8.4795 7.6047 19 7 -2.7012 -7.4378 8.1501 20 14 -1.7443 -9.9917 8.6377 21 1 -0.3954 -9.8605 9.2447 22 1 -2.7611 -10.1159 9.7130 23 1 -1.7842 -11.2010 7.7768 24 6 -0.9765 -6.1524 5.4956 25 6 2.8183 -1.9891 3.4779 26 6 3.3176 -2.8434 4.6448 27 6 2.1529 -1.8728 4.8508 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7210 -1.2494 37 1 2.5545 -4.5877 3.0997 38 1 1.7112 -4.5336 1.5332 39 1 -0.3602 -3.7874 2.6739 40 1 0.4832 -3.8415 4.2405 41 1 0.9017 -6.2658 3.9325 42 1 0.0584 -6.2124 2.3658 43 1 -2.4515 -7.5061 3.2790 44 1 -0.8100 -8.0630 3.8176 45 1 -3.6686 -6.6680 6.5337 46 1 -2.9438 -7.4544 9.0893 47 1 0.0093 -6.5414 5.7503 48 1 -1.2560 -5.2866 6.0959 49 1 3.4495 -1.1621 3.1529 50 1 3.0875 -3.9086 4.6232 51 1 4.2777 -2.5786 5.0877 52 1 2.3468 -0.9696 5.4291 53 1 1.1562 -2.2992 4.9647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364692955.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:06 Heat of formation + Delta-G solvation = -82.778573 kcal Electronic energy + Delta-G solvation = -31024.946732 eV Core-core repulsion = 26898.394925 eV Total energy + Delta-G solvation = -4126.551807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.96548 -40.95629 -39.62425 -37.76451 -36.57864 -35.12991 -34.97764 -34.10295 -33.01103 -29.58315 -28.36490 -28.28282 -27.41163 -26.70426 -24.96866 -23.91812 -23.36879 -22.40154 -21.85141 -20.51979 -20.20217 -19.34975 -19.15714 -17.74237 -17.28071 -17.14907 -16.87305 -16.52460 -16.36390 -16.12474 -15.73958 -15.46721 -15.32813 -15.09606 -14.89184 -14.55069 -14.20964 -13.86680 -13.73008 -13.52508 -13.39082 -13.31597 -13.11640 -12.97547 -12.91684 -12.85325 -12.73719 -12.69458 -12.47168 -12.39485 -12.31263 -12.29085 -12.15785 -11.94489 -11.87293 -11.54960 -11.42801 -11.36531 -11.13461 -11.01307 -10.64729 -10.08639 -9.69233 -9.61251 -8.25273 -6.43218 1.05834 1.42374 1.44940 1.55223 1.67743 2.37291 2.68993 2.86738 2.95487 3.19713 3.71165 3.75814 3.79612 3.80604 3.89054 3.95606 3.95954 4.03841 4.10131 4.13984 4.30854 4.35153 4.41754 4.49837 4.51358 4.56743 4.61517 4.65004 4.69339 4.76647 4.81038 4.83386 4.88944 4.89796 4.90929 4.94125 5.04246 5.12280 5.14184 5.19898 5.25506 5.28572 5.32291 5.38794 5.42129 5.48001 5.52449 5.74979 5.96511 6.27175 6.35775 6.62970 7.24618 7.29923 7.55454 8.80104 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002274 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.823743 B =12308.773820 C =12872.351486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.178 4.178 5 O -0.362 6.362 6 C 0.650 3.350 7 O -0.589 6.589 8 N -0.568 5.568 9 C 0.135 3.865 10 C -0.111 4.111 11 C 0.023 3.977 12 N -0.482 5.482 13 C 0.012 3.988 14 C 0.217 3.783 15 O -0.586 6.586 16 C -0.555 4.555 17 H 0.068 0.932 18 C 0.025 3.975 19 N -0.921 5.921 20 Si 0.971 3.029 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.006 4.006 25 C 0.066 3.934 26 C -0.167 4.167 27 C -0.201 4.201 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.383 0.617 46 H 0.274 0.726 47 H 0.066 0.934 48 H 0.045 0.955 49 H 0.146 0.854 50 H 0.099 0.901 51 H 0.130 0.870 52 H 0.118 0.882 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.311 15.915 -11.933 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.190 4.190 4 C -0.235 4.235 5 O -0.276 6.276 6 C 0.406 3.594 7 O -0.480 6.480 8 N -0.306 5.306 9 C 0.013 3.987 10 C -0.150 4.150 11 C -0.106 4.106 12 N -0.204 5.204 13 C -0.117 4.117 14 C 0.176 3.824 15 O -0.398 6.398 16 C -0.593 4.593 17 H 0.086 0.914 18 C -0.175 4.175 19 N -0.562 5.562 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.135 4.135 25 C -0.037 4.037 26 C -0.204 4.204 27 C -0.239 4.239 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.238 0.762 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.164 0.836 50 H 0.117 0.883 51 H 0.149 0.851 52 H 0.136 0.864 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.637 16.477 -13.028 26.187 hybrid contribution 0.068 -1.364 1.508 2.035 sum 15.705 15.113 -11.520 24.653 Atomic orbital electron populations 1.22473 0.94627 1.03340 1.03387 1.22419 0.94148 0.92989 0.81703 1.21865 1.02563 0.90337 1.04237 1.22458 1.01727 1.02061 0.97256 1.86313 1.71190 1.22836 1.47298 1.18135 0.78420 0.81013 0.81882 1.90907 1.41498 1.70998 1.44550 1.46331 1.56462 1.09314 1.18444 1.21515 0.96793 0.78109 1.02239 1.21737 0.97083 0.95777 1.00370 1.22605 0.91654 0.96566 0.99769 1.68788 1.23578 1.22264 1.05766 1.23975 0.99409 0.90231 0.98041 1.19786 0.80415 0.90484 0.91701 1.86017 1.31826 1.87895 1.34024 1.21832 1.40246 1.01996 0.95242 0.91410 1.25859 0.93606 0.99246 0.98759 1.69385 1.41735 1.30934 1.14146 0.85364 0.78120 0.79069 0.77915 1.19596 1.20683 1.19341 1.24508 1.00429 0.99390 0.89218 1.21964 0.99166 1.00224 0.82394 1.23456 0.99906 0.97944 0.99128 1.23524 0.97806 1.02965 0.99642 0.92430 0.89006 0.92531 0.90793 0.88022 0.91392 0.92267 0.89142 0.91600 0.87196 0.89999 0.93750 0.92198 0.92693 0.90659 0.91665 0.90034 0.76198 0.91579 0.91619 0.93606 0.83625 0.88293 0.85149 0.86384 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 2 C 0.12 2.34 1.13 -10.79 -0.01 2.33 16 3 C -0.13 -1.56 8.85 71.98 0.64 -0.92 16 4 C -0.18 -3.24 8.37 71.98 0.60 -2.63 16 5 O -0.36 -8.50 8.90 -55.48 -0.49 -8.99 16 6 C 0.65 18.00 7.69 129.79 1.00 19.00 16 7 O -0.59 -19.36 11.51 19.83 0.23 -19.13 16 8 N -0.57 -13.75 2.80 -928.07 -2.60 -16.35 16 9 C 0.14 3.28 4.91 86.38 0.42 3.70 16 10 C -0.11 -3.37 5.82 30.59 0.18 -3.20 16 11 C 0.02 0.77 4.82 86.30 0.42 1.19 16 12 N -0.48 -20.55 6.33 -927.58 -5.88 -26.43 16 13 C 0.01 0.55 7.09 83.58 0.59 1.14 16 14 C 0.22 11.27 1.57 -11.15 -0.02 11.25 16 15 O -0.59 -33.33 13.54 -148.98 -2.02 -35.35 16 16 C -0.56 -29.61 8.69 25.60 0.22 -29.38 16 17 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 18 C 0.02 1.30 5.40 84.65 0.46 1.76 16 19 N -0.92 -49.90 11.02 21.45 0.24 -49.67 16 20 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 C -0.01 -0.27 7.13 83.62 0.60 0.32 16 25 C 0.07 1.23 6.16 44.99 0.28 1.51 16 26 C -0.17 -2.62 9.74 30.59 0.30 -2.32 16 27 C -0.20 -3.85 10.19 30.59 0.31 -3.54 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.46 5.88 -2.39 -0.01 1.45 16 35 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 2.12 5.99 -2.38 -0.01 2.10 16 38 H 0.08 2.11 7.50 -2.39 -0.02 2.09 16 39 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.06 1.89 5.89 -2.38 -0.01 1.88 16 41 H 0.05 1.67 7.30 -2.38 -0.02 1.65 16 42 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 43 H 0.06 2.93 8.14 -2.39 -0.02 2.92 16 44 H 0.08 3.28 7.86 -2.39 -0.02 3.26 16 45 H 0.38 22.20 6.34 -74.06 -0.47 21.73 16 46 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 47 H 0.07 2.92 7.37 -2.39 -0.02 2.90 16 48 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.15 2.29 7.71 -2.39 -0.02 2.27 16 50 H 0.10 1.69 6.11 -2.39 -0.01 1.68 16 51 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.08 1.94 6.11 -2.39 -0.01 1.92 16 Total: -1.00 -65.51 412.77 -1.48 -66.99 By element: Atomic # 1 Polarization: 48.23 SS G_CDS: 0.43 Total: 48.66 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 6.58 Total: -2.96 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -8.24 Total: -92.44 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -2.28 Total: -63.47 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -65.51 -1.48 -66.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364692955.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.784 kcal (2) G-P(sol) polarization free energy of solvation -65.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds