Wall clock time and date at job start Sat Apr 11 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 C 1.52999 * 109.46971 * 240.00099 * 2 1 3 5 5 O 1.45201 * 109.47326 * 120.00078 * 2 1 3 6 6 C 1.34629 * 117.00045 * 59.99874 * 5 2 1 7 7 O 1.21516 * 120.00232 * 0.02562 * 6 5 2 8 8 N 1.34784 * 120.00064 * 180.02562 * 6 5 2 9 9 C 1.46606 * 125.18945 * 0.02602 * 8 6 5 10 10 C 1.53655 * 107.85617 * 179.67541 * 9 8 6 11 11 C 1.54374 * 104.84577 * 16.77075 * 10 9 8 12 12 N 1.46900 * 112.49362 * 96.73828 * 11 10 9 13 13 C 1.46895 * 111.00051 * 61.01159 * 12 11 10 14 14 C 1.52998 * 109.47014 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.47236 * 60.00373 * 14 13 12 16 16 O 1.42904 * 109.47196 * 299.99832 * 14 13 12 17 17 C 1.50707 * 109.47142 * 180.02562 * 14 13 12 18 18 H 1.08001 * 119.99826 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99945 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99681 * 179.97438 * 19 17 14 21 21 Si 1.86792 * 120.00006 * 359.97438 * 19 17 14 22 22 H 1.48504 * 109.47482 * 90.00208 * 21 19 17 23 23 H 1.48506 * 109.46947 * 210.00228 * 21 19 17 24 24 H 1.48501 * 109.47317 * 330.00034 * 21 19 17 25 25 C 1.53975 * 108.48940 * 221.75207 * 11 10 9 26 26 C 1.54221 * 106.75281 * 110.37123 * 25 11 10 27 27 C 1.54894 * 104.22578 * 336.59291 * 26 25 11 28 28 C 1.46392 * 125.19097 * 179.72172 * 8 6 5 29 29 H 1.09000 * 111.60145 * 41.25534 * 28 8 6 30 30 H 1.09002 * 109.47010 * 299.99572 * 1 2 3 31 31 H 1.08994 * 109.47522 * 60.00052 * 1 2 3 32 32 H 1.09006 * 109.46865 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47020 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47006 * 300.00274 * 3 2 1 35 35 H 1.08999 * 109.47200 * 59.99934 * 3 2 1 36 36 H 1.08996 * 109.47092 * 299.99450 * 4 2 1 37 37 H 1.08993 * 109.46862 * 60.00088 * 4 2 1 38 38 H 1.09007 * 109.46717 * 179.97438 * 4 2 1 39 39 H 1.09002 * 109.79133 * 299.26583 * 9 8 6 40 40 H 1.08998 * 109.79317 * 60.04405 * 9 8 6 41 41 H 1.08992 * 110.36748 * 135.61291 * 10 9 8 42 42 H 1.08999 * 110.35995 * 257.82679 * 10 9 8 43 43 H 1.00899 * 111.00077 * 297.05759 * 12 11 10 44 44 H 1.08997 * 109.47320 * 300.00247 * 13 12 11 45 45 H 1.09002 * 109.47197 * 60.00283 * 13 12 11 46 46 H 0.96703 * 114.00002 * 300.00462 * 16 14 13 47 47 H 0.96999 * 119.99664 * 179.97438 * 20 19 17 48 48 H 1.08997 * 110.00005 * 229.69414 * 25 11 10 49 49 H 1.08993 * 110.00286 * 351.04428 * 25 11 10 50 50 H 1.08998 * 110.47493 * 95.28040 * 26 25 11 51 51 H 1.09001 * 110.47644 * 217.90529 * 26 25 11 52 52 H 1.09006 * 110.75738 * 156.40484 * 27 26 25 53 53 H 1.08999 * 110.75778 * 279.59470 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9722 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 2.9118 -2.1321 3.4904 10 6 3.1334 -3.2538 4.5170 11 6 2.7439 -4.5508 3.7759 12 7 3.9079 -5.2463 3.2106 13 6 4.8492 -5.6413 4.2669 14 6 6.0457 -6.3605 3.6408 15 1 6.5456 -5.6918 2.9401 16 8 5.5921 -7.5247 2.9471 17 6 7.0112 -6.7663 4.7244 18 1 6.7933 -6.5341 5.7565 19 6 8.1731 -7.4332 4.3983 20 7 9.0158 -7.7869 5.3440 21 14 8.5502 -7.8341 2.6133 22 1 9.3152 -6.7158 2.0056 23 1 9.3561 -9.0796 2.5453 24 1 7.2791 -8.0259 1.8698 25 6 1.9390 -5.4413 4.7402 26 6 0.4863 -5.4573 4.2226 27 6 0.3644 -4.1567 3.3903 28 6 1.7385 -4.0637 2.6993 29 1 1.7848 -4.6764 1.7989 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2074 -2.1391 38 1 3.1300 -0.7208 -1.2494 39 1 3.8700 -1.8117 3.0815 40 1 2.4135 -1.2881 3.9673 41 1 4.1798 -3.2896 4.8197 42 1 2.4926 -3.1046 5.3860 43 1 4.3648 -4.6783 2.5130 44 1 5.1955 -4.7534 4.7957 45 1 4.3492 -6.3097 4.9678 46 1 5.1367 -8.1655 3.5102 47 1 9.8331 -8.2563 5.1145 48 1 2.3457 -6.4525 4.7412 49 1 1.9715 -5.0250 5.7470 50 1 0.3156 -6.3305 3.5930 51 1 -0.2157 -5.4439 5.0563 52 1 -0.4341 -4.2431 2.6533 53 1 0.1976 -3.2970 4.0393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365351957.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:22 Heat of formation + Delta-G solvation = -148.120551 kcal Electronic energy + Delta-G solvation = -31944.548281 eV Core-core repulsion = 27815.163033 eV Total energy + Delta-G solvation = -4129.385248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.21510 -41.02419 -38.39337 -37.79317 -36.06499 -35.10912 -34.76470 -34.37586 -31.82811 -30.17726 -28.94690 -28.37276 -28.30339 -27.75132 -25.69728 -24.52361 -22.81589 -22.41285 -21.42157 -20.40646 -20.17235 -19.27290 -18.98464 -17.61945 -17.48929 -17.25559 -16.85855 -16.32355 -16.28302 -16.10804 -15.54064 -15.33091 -15.17139 -14.99880 -14.78469 -14.69111 -14.51335 -14.13696 -14.01577 -13.52299 -13.44733 -13.35140 -13.11293 -12.96850 -12.92507 -12.89444 -12.88701 -12.86037 -12.55902 -12.41762 -12.28356 -12.08578 -12.04226 -11.91021 -11.67922 -11.61991 -11.40190 -11.34197 -11.11318 -11.03702 -10.79106 -10.09510 -9.76737 -9.26144 -8.34120 -6.47597 1.04114 1.39509 1.46126 1.70651 1.76827 2.44815 2.81442 3.02567 3.06272 3.32393 3.49301 3.74585 3.78681 3.82949 3.93958 3.98617 4.09631 4.13785 4.22220 4.31324 4.39406 4.42216 4.52535 4.54121 4.60643 4.61296 4.62052 4.69061 4.73855 4.75343 4.83475 4.86828 4.89303 4.91878 4.98625 5.06511 5.10450 5.14801 5.18126 5.26282 5.27416 5.30549 5.37179 5.39633 5.46491 5.48542 5.54082 6.11035 6.17044 6.38385 6.42600 6.66065 7.23482 7.25606 7.41209 8.79833 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.002983 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.523635 B = 9385.373582 C =10461.411278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.662 3.338 7 O -0.589 6.589 8 N -0.595 5.595 9 C 0.109 3.891 10 C -0.159 4.159 11 C 0.107 3.893 12 N -0.662 5.662 13 C 0.061 3.939 14 C 0.204 3.796 15 H 0.043 0.957 16 O -0.575 6.575 17 C -0.560 4.560 18 H 0.041 0.959 19 C 0.029 3.971 20 N -0.939 5.939 21 Si 0.935 3.065 22 H -0.288 1.288 23 H -0.300 1.300 24 H -0.207 1.207 25 C -0.108 4.108 26 C -0.109 4.109 27 C -0.121 4.121 28 C 0.161 3.839 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.334 0.666 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.366 0.634 47 H 0.266 0.734 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.066 0.934 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.313 17.444 -6.486 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.418 3.582 7 O -0.480 6.480 8 N -0.335 5.335 9 C -0.013 4.013 10 C -0.199 4.199 11 C 0.014 3.986 12 N -0.291 5.291 13 C -0.067 4.067 14 C 0.145 3.855 15 H 0.060 0.940 16 O -0.381 6.381 17 C -0.598 4.598 18 H 0.060 0.940 19 C -0.170 4.170 20 N -0.579 5.579 21 Si 0.760 3.240 22 H -0.215 1.215 23 H -0.227 1.227 24 H -0.129 1.129 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.159 4.159 28 C 0.059 3.941 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.121 0.879 43 H 0.152 0.848 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.213 0.787 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.086 0.914 51 H 0.108 0.892 52 H 0.085 0.915 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.444 17.026 -7.349 27.602 hybrid contribution 1.183 0.182 0.212 1.215 sum -19.261 17.208 -7.138 26.797 Atomic orbital electron populations 1.22448 0.93637 1.03643 1.03661 1.22440 0.94848 0.92659 0.81345 1.21876 1.02248 0.90596 1.04433 1.22479 1.01389 1.02219 0.97688 1.86324 1.71587 1.22839 1.47389 1.17671 0.78677 0.80800 0.81059 1.90888 1.42517 1.71002 1.43601 1.46964 1.52830 1.12535 1.21153 1.21893 0.94474 0.97494 0.87452 1.23267 1.03775 0.94131 0.98677 1.22312 0.91050 0.92192 0.93004 1.60492 1.09208 1.45180 1.14234 1.22330 0.92586 0.98577 0.93255 1.19536 0.90512 0.84911 0.90496 0.93960 1.86603 1.77948 1.32867 1.40711 1.21824 1.05144 1.38359 0.94505 0.94028 1.25794 0.95415 0.94109 1.01706 1.70077 1.11903 1.40628 1.35279 0.86043 0.79767 0.76609 0.81567 1.21514 1.22660 1.12869 1.22224 0.94748 0.99925 0.97709 1.22244 0.95957 0.96743 0.99790 1.22592 0.95099 0.99262 0.98996 1.22134 0.95236 0.79008 0.97761 0.90402 0.91815 0.88981 0.92056 0.91595 0.87800 0.91032 0.92172 0.88868 0.92480 0.91808 0.89666 0.90087 0.87934 0.84823 0.94881 0.90861 0.78691 0.92552 0.91433 0.89869 0.91393 0.89221 0.91491 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.37 71.98 0.60 -2.53 16 2 C 0.12 2.34 1.13 -10.79 -0.01 2.33 16 3 C -0.13 -1.67 8.85 71.98 0.64 -1.04 16 4 C -0.18 -3.58 8.37 71.98 0.60 -2.98 16 5 O -0.37 -8.90 9.46 -55.39 -0.52 -9.42 16 6 C 0.66 18.29 7.90 129.79 1.03 19.32 16 7 O -0.59 -18.72 12.16 19.79 0.24 -18.48 16 8 N -0.60 -14.71 2.93 -920.59 -2.70 -17.41 16 9 C 0.11 2.26 6.85 86.58 0.59 2.85 16 10 C -0.16 -3.25 5.81 31.28 0.18 -3.07 16 11 C 0.11 2.55 0.86 5.06 0.00 2.56 16 12 N -0.66 -20.01 6.18 -462.65 -2.86 -22.86 16 13 C 0.06 2.14 4.77 86.30 0.41 2.55 16 14 C 0.20 8.97 2.52 29.85 0.08 9.04 16 15 H 0.04 1.94 7.57 -2.39 -0.02 1.92 16 16 O -0.58 -24.87 10.01 -148.98 -1.49 -26.37 16 17 C -0.56 -30.34 9.34 25.60 0.24 -30.10 16 18 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 19 C 0.03 1.68 5.47 84.65 0.46 2.14 16 20 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 21 Si 0.94 45.23 26.99 68.60 1.85 47.08 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.21 -9.64 5.31 99.48 0.53 -9.11 16 25 C -0.11 -2.27 5.48 31.34 0.17 -2.10 16 26 C -0.11 -1.96 6.82 31.66 0.22 -1.74 16 27 C -0.12 -2.43 6.42 31.61 0.20 -2.22 16 28 C 0.16 3.97 3.14 46.12 0.14 4.12 16 29 H 0.08 2.33 8.12 -2.39 -0.02 2.31 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.45 5.88 -2.38 -0.01 1.44 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.85 6.05 -2.39 -0.01 1.83 16 42 H 0.10 1.70 7.28 -2.39 -0.02 1.68 16 43 H 0.33 10.59 8.79 -89.69 -0.79 9.80 16 44 H 0.03 1.15 6.21 -2.39 -0.01 1.14 16 45 H 0.07 2.55 6.73 -2.39 -0.02 2.53 16 46 H 0.37 14.20 9.04 -74.06 -0.67 13.53 16 47 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 48 H 0.07 1.66 6.98 -2.39 -0.02 1.64 16 49 H 0.08 1.51 7.19 -2.39 -0.02 1.50 16 50 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 53 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 Total: -1.00 -68.25 401.18 -0.35 -68.60 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.72 Total: 37.11 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 5.56 Total: -0.87 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -5.26 Total: -97.65 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -1.77 Total: -54.27 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.85 Total: 47.08 kcal Total: -68.25 -0.35 -68.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365351957.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.523 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds