Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47062 * 2 1 4 4 H 1.08993 * 109.47893 * 55.01551 * 3 2 1 5 5 C 1.53092 * 109.48033 * 175.05278 * 3 2 1 6 6 C 1.53178 * 109.16096 * 177.58659 * 5 3 2 7 7 H 1.09003 * 109.53801 * 183.15276 * 6 5 3 8 8 C 1.50697 * 109.61578 * 62.93425 * 6 5 3 9 9 O 1.21285 * 119.99769 * 346.02099 * 8 6 5 10 10 N 1.34777 * 120.00208 * 166.02826 * 8 6 5 11 11 C 1.46915 * 120.62928 * 4.54936 * 10 8 6 12 12 C 1.52772 * 109.00922 * 233.58617 * 11 10 8 13 13 C 1.53033 * 109.38046 * 305.58937 * 12 11 10 14 14 O 1.42907 * 109.45909 * 301.21591 * 13 12 11 15 15 C 1.52999 * 109.44848 * 181.25538 * 13 12 11 16 16 N 1.46498 * 109.47419 * 59.93332 * 15 13 12 17 17 C 1.36934 * 120.00321 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99789 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00575 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99450 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47235 * 90.00304 * 21 19 17 23 23 H 1.48500 * 109.46902 * 209.99802 * 21 19 17 24 24 H 1.48499 * 109.47108 * 329.99970 * 21 19 17 25 25 C 1.53036 * 109.54269 * 61.23778 * 13 12 11 26 26 C 1.46922 * 120.63091 * 184.83006 * 10 8 6 27 27 C 1.53174 * 109.03649 * 303.02053 * 6 5 3 28 28 C 1.53089 * 109.16413 * 56.98454 * 27 6 5 29 29 O 1.42903 * 109.47508 * 294.99232 * 3 2 1 30 30 H 1.08991 * 109.47567 * 300.00665 * 1 2 3 31 31 H 1.09003 * 109.47300 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46568 * 60.00824 * 1 2 3 33 33 H 1.09004 * 109.46568 * 119.99176 * 2 1 3 34 34 H 1.08991 * 109.47567 * 239.99335 * 2 1 3 35 35 H 1.09000 * 109.52229 * 297.49660 * 5 3 2 36 36 H 1.08999 * 109.51873 * 57.68450 * 5 3 2 37 37 H 1.09001 * 109.58853 * 353.41507 * 11 10 8 38 38 H 1.09002 * 109.59038 * 113.84531 * 11 10 8 39 39 H 1.09001 * 109.56348 * 185.54863 * 12 11 10 40 40 H 1.09000 * 109.35469 * 65.50157 * 12 11 10 41 41 H 0.96699 * 114.00090 * 300.07249 * 14 13 12 42 42 H 1.08996 * 109.47456 * 179.97438 * 15 13 12 43 43 H 1.09006 * 109.46906 * 299.93605 * 15 13 12 44 44 H 0.97003 * 119.99485 * 0.02562 * 16 15 13 45 45 H 0.96996 * 119.99815 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.50489 * 178.68264 * 25 13 12 47 47 H 1.09000 * 109.49726 * 58.58396 * 25 13 12 48 48 H 1.08995 * 109.59062 * 246.15297 * 26 10 8 49 49 H 1.09001 * 109.59153 * 6.43585 * 26 10 8 50 50 H 1.08996 * 109.52320 * 297.07183 * 27 6 5 51 51 H 1.08998 * 109.52270 * 176.88612 * 27 6 5 52 52 H 1.09000 * 109.47985 * 182.41210 * 28 27 6 53 53 H 1.08998 * 109.49666 * 62.37539 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6057 1.9816 0.8419 5 6 3.5658 1.4446 0.1245 6 6 4.0733 2.8886 0.0631 7 1 5.1629 2.8937 0.0949 8 6 3.5312 3.6656 1.2349 9 8 2.6208 3.2111 1.8949 10 7 4.0578 4.8657 1.5494 11 6 5.0919 5.4747 0.7019 12 6 6.2987 5.8314 1.5681 13 6 5.8440 6.7106 2.7353 14 8 5.2251 7.8941 2.2268 15 6 7.0561 7.0946 3.5862 16 7 8.0171 7.8323 2.7625 17 6 9.1879 8.2812 3.3128 18 1 9.4028 8.0917 4.3541 19 6 10.0983 8.9807 2.5325 20 7 9.8358 9.2129 1.2638 21 14 11.6958 9.5924 3.2830 22 1 12.7440 8.5514 3.1322 23 1 12.1261 10.8323 2.5882 24 1 11.4871 9.8798 4.7249 25 6 4.8403 5.9399 3.5960 26 6 3.6131 5.5870 2.7497 27 6 3.5957 3.5309 -1.2429 28 6 2.0687 3.4483 -1.3145 29 8 1.6621 2.0815 -1.2211 30 1 -0.3634 0.5139 0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3632 0.5137 -0.8901 33 1 1.8932 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8898 35 1 3.8543 0.9972 1.0756 36 1 3.9989 0.8712 -0.6951 37 1 5.3946 4.7675 -0.0704 38 1 4.6984 6.3792 0.2382 39 1 7.0310 6.3723 0.9688 40 1 6.7486 4.9170 1.9550 41 1 5.8044 8.4331 1.6710 42 1 6.7328 7.7212 4.4174 43 1 7.5281 6.1919 3.9745 44 1 7.8239 8.0028 1.8274 45 1 10.4720 9.7014 0.7184 46 1 4.5346 6.5581 4.4400 47 1 5.3039 5.0246 3.9639 48 1 3.0965 6.5009 2.4564 49 1 2.9381 4.9550 3.3268 50 1 4.0294 2.9996 -2.0900 51 1 3.9056 4.5756 -1.2696 52 1 1.7262 3.8655 -2.2614 53 1 1.6348 4.0138 -0.4899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484962606.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -150.673375 kcal Electronic energy + Delta-G solvation = -31863.992558 eV Core-core repulsion = 27734.496612 eV Total energy + Delta-G solvation = -4129.495946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.05960 -40.48561 -39.08136 -36.85575 -35.80207 -35.10111 -34.67866 -33.44043 -32.36685 -31.84420 -30.73845 -28.45032 -26.86170 -25.53055 -24.87909 -24.27425 -23.75277 -22.43672 -21.99401 -21.13168 -19.76145 -19.46433 -18.11772 -17.38607 -17.30207 -17.18042 -16.80838 -16.68575 -16.27565 -15.85811 -15.69644 -15.52972 -15.14618 -14.99534 -14.88306 -14.62790 -14.46896 -14.35201 -14.24531 -13.99803 -13.57629 -13.50006 -13.24246 -13.12115 -13.00572 -12.78726 -12.76967 -12.62508 -12.48638 -12.28734 -12.23847 -12.10166 -12.05080 -11.98000 -11.81828 -11.63376 -11.41471 -11.27996 -10.97845 -10.80250 -10.62309 -10.09633 -9.64400 -9.02584 -7.97487 -5.25398 1.48069 1.48531 1.54597 1.56713 1.95589 2.54304 2.88736 3.24180 3.37261 3.40777 3.61748 3.63879 3.72936 3.76398 3.88745 3.93330 4.00607 4.05368 4.22096 4.26795 4.30711 4.32618 4.40821 4.44765 4.54185 4.57342 4.60781 4.66294 4.72921 4.74620 4.81664 4.82156 4.88346 4.90394 4.91211 4.96296 5.04367 5.06944 5.08822 5.10979 5.15853 5.17267 5.30835 5.33018 5.44233 5.48865 5.53985 6.24598 6.35245 6.39469 6.73736 7.12520 7.32996 8.03337 8.29134 9.24983 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024920 B = 0.002341 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.304370 B =11956.401288 C =12285.903480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.072 3.928 4 H 0.070 0.930 5 C -0.126 4.126 6 C -0.112 4.112 7 H 0.117 0.883 8 C 0.516 3.484 9 O -0.572 6.572 10 N -0.603 5.603 11 C 0.115 3.885 12 C -0.151 4.151 13 C 0.138 3.862 14 O -0.563 6.563 15 C 0.128 3.872 16 N -0.734 5.734 17 C -0.247 4.247 18 H 0.070 0.930 19 C -0.067 4.067 20 N -0.961 5.961 21 Si 0.968 3.032 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.275 1.275 25 C -0.111 4.111 26 C 0.123 3.877 27 C -0.144 4.144 28 C 0.058 3.942 29 O -0.391 6.391 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.382 0.618 42 H 0.018 0.982 43 H 0.026 0.974 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.102 0.898 51 H 0.091 0.909 52 H 0.111 0.889 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.237 -15.778 -5.524 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.014 3.986 4 H 0.088 0.912 5 C -0.164 4.164 6 C -0.133 4.133 7 H 0.135 0.865 8 C 0.306 3.694 9 O -0.452 6.452 10 N -0.334 5.334 11 C -0.007 4.007 12 C -0.190 4.190 13 C 0.097 3.903 14 O -0.370 6.370 15 C 0.001 3.999 16 N -0.379 5.379 17 C -0.379 4.379 18 H 0.088 0.912 19 C -0.260 4.260 20 N -0.611 5.611 21 Si 0.798 3.202 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.200 1.200 25 C -0.149 4.149 26 C 0.001 3.999 27 C -0.182 4.182 28 C -0.019 4.019 29 O -0.311 6.311 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.231 0.769 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.211 0.789 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.120 0.880 51 H 0.110 0.890 52 H 0.129 0.871 53 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -16.212 -16.301 -4.837 23.494 hybrid contribution 1.800 1.260 0.222 2.208 sum -14.412 -15.041 -4.615 21.336 Atomic orbital electron populations 1.21675 0.95428 1.01888 1.01367 1.21548 0.96702 0.93928 1.02913 1.22576 0.94006 0.94701 0.87276 0.91206 1.22006 0.96509 0.94401 1.03440 1.21486 1.02897 0.95757 0.93144 0.86522 1.21083 0.81907 0.80627 0.85780 1.90576 1.30659 1.69340 1.54630 1.48195 1.39966 1.19116 1.26173 1.21793 0.86763 0.99455 0.92734 1.22372 0.98038 1.00666 0.97912 1.21225 0.91092 0.85100 0.92904 1.86382 1.43185 1.36604 1.70800 1.21436 0.89976 0.94563 0.93911 1.42360 1.18886 1.66243 1.10440 1.19522 0.95692 1.27722 0.94973 0.91248 1.25440 1.01995 1.02090 0.96436 1.69751 1.37643 1.47061 1.06688 0.85224 0.80158 0.77199 0.77652 1.21425 1.22131 1.19985 1.21810 0.95342 0.99831 0.97930 1.21397 0.96039 0.96484 0.86010 1.22275 0.96796 1.02790 0.96327 1.22606 0.94133 0.83030 1.02110 1.87853 1.79139 1.24792 1.39300 0.93736 0.91473 0.93059 0.90070 0.90872 0.90908 0.88994 0.87275 0.90234 0.90611 0.90812 0.76939 0.96407 0.95590 0.78862 0.93863 0.89679 0.89935 0.91112 0.89772 0.87982 0.89029 0.87119 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.81 71.98 0.71 -1.84 16 2 C -0.11 -1.99 5.64 30.60 0.17 -1.82 16 3 C 0.07 1.52 2.36 30.63 0.07 1.59 16 4 H 0.07 1.90 5.36 -2.39 -0.01 1.89 16 5 C -0.13 -2.27 4.65 30.68 0.14 -2.12 16 6 C -0.11 -1.98 2.16 -11.42 -0.02 -2.00 16 7 H 0.12 1.69 7.13 -2.39 -0.02 1.67 16 8 C 0.52 12.21 5.76 87.66 0.51 12.71 16 9 O -0.57 -16.96 12.93 -3.05 -0.04 -17.00 16 10 N -0.60 -13.71 2.98 -819.74 -2.44 -16.15 16 11 C 0.11 2.35 5.04 86.22 0.43 2.78 16 12 C -0.15 -3.94 4.91 30.53 0.15 -3.79 16 13 C 0.14 4.03 0.71 -10.77 -0.01 4.02 16 14 O -0.56 -17.32 11.71 -148.98 -1.74 -19.06 16 15 C 0.13 4.80 5.40 86.38 0.47 5.27 16 16 N -0.73 -34.02 5.07 -343.45 -1.74 -35.76 16 17 C -0.25 -13.15 9.99 84.03 0.84 -12.31 16 18 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 19 C -0.07 -3.63 5.50 84.86 0.47 -3.17 16 20 N -0.96 -54.93 13.06 21.65 0.28 -54.65 16 21 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C -0.11 -2.79 5.11 30.67 0.16 -2.64 16 26 C 0.12 3.02 6.18 86.36 0.53 3.55 16 27 C -0.14 -2.16 5.26 30.68 0.16 -2.00 16 28 C 0.06 1.09 6.62 72.01 0.48 1.57 16 29 O -0.39 -8.68 9.94 -148.98 -1.48 -10.16 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.97 7.82 -2.38 -0.02 0.96 16 33 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 1.71 4.78 -2.39 -0.01 1.70 16 38 H 0.08 1.64 7.81 -2.39 -0.02 1.62 16 39 H 0.08 2.27 6.82 -2.39 -0.02 2.26 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.38 11.97 7.85 -74.06 -0.58 11.39 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.38 17.77 5.58 -92.71 -0.52 17.25 16 45 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.07 1.80 7.81 -2.39 -0.02 1.78 16 49 H 0.08 2.15 7.03 -2.39 -0.02 2.13 16 50 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.09 1.21 6.19 -2.39 -0.01 1.20 16 52 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.03 0.64 7.38 -2.39 -0.02 0.62 16 Total: -1.00 -64.38 395.20 -0.07 -64.45 By element: Atomic # 1 Polarization: 42.22 SS G_CDS: -0.19 Total: 42.03 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.25 Total: -0.19 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.90 Total: -106.56 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -3.26 Total: -46.22 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.38 -0.07 -64.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484962606.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.227 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds