Wall clock time and date at job start Sat Apr 11 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42894 * 109.47582 * 2 1 4 4 C 1.52997 * 109.46850 * 240.00033 * 2 1 3 5 5 C 1.50698 * 109.47370 * 60.00323 * 4 2 1 6 6 O 1.21280 * 119.99705 * 359.97438 * 5 4 2 7 7 N 1.34772 * 120.00480 * 179.97438 * 5 4 2 8 8 C 1.46929 * 120.63040 * 359.97438 * 7 5 4 9 9 C 1.53191 * 108.77965 * 233.63129 * 8 7 5 10 10 C 1.53038 * 109.31061 * 305.36834 * 9 8 7 11 11 C 1.53038 * 109.54116 * 61.35963 * 10 9 8 12 12 H 1.08997 * 109.51977 * 58.60782 * 11 10 9 13 13 N 1.46507 * 109.49570 * 178.68526 * 11 10 9 14 14 C 1.36929 * 120.00145 * 59.84205 * 13 11 10 15 15 H 1.07995 * 120.00017 * 35.09663 * 14 13 11 16 16 C 1.38817 * 119.99929 * 215.10311 * 14 13 11 17 17 N 1.31616 * 120.00233 * 21.91195 * 16 14 13 18 18 Si 1.86804 * 119.99940 * 201.91646 * 16 14 13 19 19 H 1.48500 * 109.47336 * 89.99519 * 18 16 14 20 20 H 1.48495 * 109.46819 * 210.00099 * 18 16 14 21 21 H 1.48502 * 109.46707 * 329.99493 * 18 16 14 22 22 C 1.46503 * 119.99665 * 239.83881 * 13 11 10 23 23 C 1.53004 * 109.47136 * 272.19468 * 22 13 11 24 24 O 1.42895 * 109.46953 * 65.00033 * 23 22 13 25 25 C 1.46920 * 120.63486 * 179.97438 * 7 5 4 26 26 C 1.53006 * 109.46970 * 120.00415 * 2 1 3 27 27 C 1.52994 * 117.49935 * 13.61897 * 26 2 1 28 28 C 1.52999 * 117.49901 * 304.99442 * 26 2 1 29 29 H 1.09000 * 109.47597 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46707 * 300.00081 * 1 2 3 31 31 H 1.08997 * 109.47103 * 59.99471 * 1 2 3 32 32 H 0.96706 * 114.00588 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47475 * 299.99856 * 4 2 1 34 34 H 1.09001 * 109.47351 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.58616 * 353.42178 * 8 7 5 36 36 H 1.09000 * 109.58517 * 113.83835 * 8 7 5 37 37 H 1.09004 * 109.49263 * 65.31179 * 9 8 7 38 38 H 1.08995 * 109.50056 * 185.37948 * 9 8 7 39 39 H 1.09009 * 109.45933 * 301.33956 * 10 9 8 40 40 H 1.08999 * 109.46105 * 181.38604 * 10 9 8 41 41 H 0.96998 * 120.00590 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.47072 * 152.19348 * 22 13 11 43 43 H 1.08996 * 109.47251 * 32.19748 * 22 13 11 44 44 H 1.08994 * 109.46958 * 184.99941 * 23 22 13 45 45 H 1.09000 * 109.47167 * 305.00232 * 23 22 13 46 46 H 0.96702 * 113.99738 * 179.97438 * 24 23 22 47 47 H 1.09008 * 109.58504 * 6.58166 * 25 7 5 48 48 H 1.08994 * 109.58872 * 246.15852 * 25 7 5 49 49 H 1.08995 * 115.54732 * 159.32963 * 26 2 1 50 50 H 1.09005 * 117.50172 * 359.97438 * 27 26 2 51 51 H 1.09001 * 117.49759 * 145.02316 * 27 26 2 52 52 H 1.08997 * 117.50212 * 214.97943 * 28 26 2 53 53 H 1.09005 * 117.49591 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 8 0.8400 0.9750 -2.3684 7 7 1.8635 -0.4709 -3.7038 8 6 2.7082 -1.6636 -3.8548 9 6 3.8937 -1.3169 -4.7609 10 6 3.3716 -0.7452 -6.0810 11 6 2.5818 0.5367 -5.8069 12 1 3.2242 1.2598 -5.3044 13 7 2.1091 1.1001 -7.0740 14 6 1.2833 0.3668 -7.8836 15 1 0.5476 -0.2934 -7.4485 16 6 1.3919 0.4719 -9.2635 17 7 2.5110 0.9047 -9.8045 18 14 -0.0503 -0.0008 -10.3526 19 1 -0.9105 1.1883 -10.5786 20 1 0.4566 -0.5002 -11.6560 21 1 -0.8433 -1.0665 -9.6888 22 6 2.5198 2.4480 -7.4748 23 6 1.5429 3.4726 -6.8943 24 8 1.6304 3.4591 -5.4680 25 6 1.3810 0.2106 -4.9127 26 6 2.0399 -0.7214 1.2492 27 6 1.0319 -1.5510 2.0469 28 6 1.5416 -0.2214 2.6066 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.9704 1.4236 0.0004 33 1 1.6766 -1.7489 -1.2493 34 1 3.1299 -0.7217 -1.2491 35 1 3.0748 -1.9779 -2.8776 36 1 2.1270 -2.4683 -4.3053 37 1 4.5240 -0.5766 -4.2679 38 1 4.4760 -2.2168 -4.9585 39 1 2.7215 -1.4765 -6.5615 40 1 4.2123 -0.5205 -6.7372 41 1 2.5868 0.9785 -10.7687 42 1 2.5181 2.5200 -8.5624 43 1 3.5230 2.6490 -7.0990 44 1 1.7959 4.4660 -7.2644 45 1 0.5273 3.2192 -7.1984 46 1 1.0374 4.0861 -5.0317 47 1 0.8719 1.1331 -4.6335 48 1 0.6919 -0.4414 -5.4493 49 1 3.0641 -1.0902 1.1939 50 1 0.0052 -1.5826 1.6821 51 1 1.3927 -2.4661 2.5165 52 1 2.2377 -0.2618 3.4444 53 1 0.8501 0.6212 2.6096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489157659.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:26 Heat of formation + Delta-G solvation = -105.441476 kcal Electronic energy + Delta-G solvation = -32255.725727 eV Core-core repulsion = 28128.191182 eV Total energy + Delta-G solvation = -4127.534544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.41225 -39.92301 -38.73154 -37.67203 -36.34666 -36.21790 -33.87377 -32.85035 -32.64004 -31.24039 -29.34890 -28.60716 -26.20884 -26.05137 -24.61198 -23.53603 -23.17472 -22.36613 -21.42496 -20.53923 -19.77638 -18.49448 -18.16819 -18.05438 -17.60487 -16.94467 -16.78276 -16.46826 -16.19263 -15.97891 -15.54839 -15.39589 -15.25579 -14.90779 -14.70137 -14.56322 -14.18425 -14.00856 -13.88192 -13.76155 -13.44067 -13.28692 -13.17367 -13.03072 -12.73435 -12.68395 -12.57501 -12.33991 -12.17329 -12.04860 -11.97537 -11.87658 -11.73322 -11.63256 -11.51837 -11.34349 -11.20923 -11.02142 -10.79636 -10.72831 -10.54644 -10.34111 -9.50983 -8.52805 -7.81748 -5.39375 1.44739 1.48513 1.55344 1.83105 2.12849 2.52073 2.85172 3.23605 3.46509 3.57618 3.64708 3.68221 3.72931 4.00977 4.02485 4.13348 4.16622 4.20380 4.23366 4.31519 4.41321 4.43648 4.50434 4.55440 4.60070 4.62145 4.69541 4.79519 4.81202 4.86829 4.89973 4.97851 4.98650 5.03103 5.05287 5.08658 5.13390 5.24332 5.25916 5.32556 5.33697 5.47570 5.53381 5.62554 5.63468 5.69745 5.78130 6.47137 6.66864 6.99953 7.00328 7.17573 7.42188 7.86822 8.42258 9.15723 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018042 B = 0.002980 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.570517 B = 9394.629244 C = 9793.272418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.179 3.821 3 O -0.564 6.564 4 C -0.154 4.154 5 C 0.504 3.496 6 O -0.565 6.565 7 N -0.611 5.611 8 C 0.106 3.894 9 C -0.123 4.123 10 C -0.116 4.116 11 C 0.181 3.819 12 H 0.038 0.962 13 N -0.585 5.585 14 C -0.250 4.250 15 H 0.054 0.946 16 C -0.035 4.035 17 N -0.917 5.917 18 Si 0.951 3.049 19 H -0.288 1.288 20 H -0.293 1.293 21 H -0.272 1.272 22 C 0.147 3.853 23 C 0.067 3.933 24 O -0.577 6.577 25 C 0.125 3.875 26 C -0.183 4.183 27 C -0.171 4.171 28 C -0.173 4.173 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.380 0.620 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.252 0.748 42 H 0.088 0.912 43 H 0.020 0.980 44 H 0.047 0.953 45 H 0.025 0.975 46 H 0.378 0.622 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.126 0.874 50 H 0.098 0.902 51 H 0.111 0.889 52 H 0.105 0.895 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.550 -7.000 21.262 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.138 3.862 3 O -0.371 6.371 4 C -0.194 4.194 5 C 0.293 3.707 6 O -0.444 6.444 7 N -0.345 5.345 8 C -0.015 4.015 9 C -0.162 4.162 10 C -0.156 4.156 11 C 0.074 3.926 12 H 0.056 0.944 13 N -0.305 5.305 14 C -0.380 4.380 15 H 0.071 0.929 16 C -0.232 4.232 17 N -0.562 5.562 18 Si 0.780 3.220 19 H -0.215 1.215 20 H -0.220 1.220 21 H -0.197 1.197 22 C 0.021 3.979 23 C -0.013 4.013 24 O -0.383 6.383 25 C 0.000 4.000 26 C -0.202 4.202 27 C -0.208 4.208 28 C -0.210 4.210 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.228 0.772 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.144 0.856 50 H 0.116 0.884 51 H 0.129 0.871 52 H 0.124 0.876 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.034 -6.809 21.016 22.185 hybrid contribution -0.625 0.591 -1.373 1.621 sum 1.409 -6.218 19.643 20.652 Atomic orbital electron populations 1.22075 0.94076 1.02340 1.02635 1.20322 0.94056 0.81276 0.90504 1.86693 1.26967 1.26536 1.96889 1.22464 1.04103 1.01811 0.91042 1.21215 0.80110 0.84367 0.84990 1.90656 1.39461 1.27899 1.86379 1.48342 1.51228 1.29595 1.05344 1.21985 0.91230 0.86179 1.02144 1.21901 0.97633 1.01904 0.94743 1.21810 0.98793 0.97890 0.97068 1.20539 0.92526 0.93287 0.86273 0.94399 1.43865 1.55936 1.11833 1.18851 1.19095 1.09762 1.21789 0.87370 0.92868 1.25671 0.97992 1.01210 0.98324 1.70075 1.24618 1.51227 1.10261 0.85522 0.80162 0.77971 0.78340 1.21512 1.22000 1.19726 1.21001 0.93099 0.83329 1.00518 1.22847 0.99492 0.98323 0.80594 1.86547 1.66602 1.65509 1.19609 1.21667 0.97192 0.96435 0.84672 1.22967 1.00516 1.04712 0.91980 1.23193 0.99312 0.95365 1.02919 1.22883 1.03965 0.97942 0.96247 0.89953 0.92753 0.92523 0.77227 0.85762 0.86076 0.86085 0.90999 0.91800 0.88533 0.93477 0.94740 0.93894 0.89500 0.96150 0.93453 0.95615 0.77554 0.91968 0.94017 0.85601 0.88401 0.87065 0.87624 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 7.18 71.98 0.52 -3.17 16 2 C 0.18 3.61 0.80 -10.79 -0.01 3.60 16 3 O -0.56 -14.32 11.85 -131.53 -1.56 -15.88 16 4 C -0.15 -2.84 3.30 29.85 0.10 -2.74 16 5 C 0.50 15.30 7.26 87.66 0.64 15.94 16 6 O -0.57 -22.51 12.37 14.42 0.18 -22.33 16 7 N -0.61 -19.08 2.97 -818.85 -2.43 -21.52 16 8 C 0.11 2.38 6.34 86.36 0.55 2.93 16 9 C -0.12 -3.17 6.08 30.67 0.19 -2.99 16 10 C -0.12 -4.47 5.11 30.62 0.16 -4.31 16 11 C 0.18 7.87 2.26 45.08 0.10 7.97 16 12 H 0.04 1.75 7.82 -2.39 -0.02 1.73 16 13 N -0.58 -29.24 2.36 -677.52 -1.60 -30.84 16 14 C -0.25 -13.38 8.25 84.04 0.69 -12.69 16 15 H 0.05 2.90 6.74 -2.91 -0.02 2.88 16 16 C -0.04 -1.90 4.95 84.86 0.42 -1.48 16 17 N -0.92 -52.13 11.36 21.65 0.25 -51.88 16 18 Si 0.95 44.10 29.61 68.60 2.03 46.13 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 C 0.15 7.20 5.65 86.38 0.49 7.68 16 23 C 0.07 2.83 7.39 71.98 0.53 3.36 16 24 O -0.58 -23.46 12.54 -148.98 -1.87 -25.33 16 25 C 0.13 5.14 5.76 86.38 0.50 5.63 16 26 C -0.18 -2.50 5.32 -10.79 -0.06 -2.56 16 27 C -0.17 -2.07 9.65 30.59 0.30 -1.77 16 28 C -0.17 -2.46 9.85 30.59 0.30 -2.16 16 29 H 0.08 1.56 6.74 -2.39 -0.02 1.54 16 30 H 0.05 1.27 6.96 -2.38 -0.02 1.26 16 31 H 0.06 1.83 5.51 -2.39 -0.01 1.82 16 32 H 0.38 6.80 9.05 -74.05 -0.67 6.13 16 33 H 0.12 1.66 7.94 -2.39 -0.02 1.64 16 34 H 0.12 1.55 7.69 -2.39 -0.02 1.53 16 35 H 0.12 1.63 5.93 -2.39 -0.01 1.61 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.97 7.70 -2.38 -0.02 1.95 16 40 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.09 4.70 5.37 -2.39 -0.01 4.69 16 43 H 0.02 0.99 7.97 -2.39 -0.02 0.97 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.38 12.00 9.12 -74.06 -0.68 11.33 16 47 H 0.06 2.93 6.43 -2.38 -0.02 2.91 16 48 H 0.04 1.84 6.79 -2.39 -0.02 1.82 16 49 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.10 1.28 5.89 -2.38 -0.01 1.27 16 51 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.08 1.44 7.29 -2.38 -0.02 1.42 16 Total: -1.00 -73.15 402.07 -0.02 -73.16 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.42 Total: 35.24 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.41 Total: 13.25 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -3.79 Total: -104.24 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -3.25 Total: -63.54 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -73.15 -0.02 -73.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489157659.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.279 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds