Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46685 * 2 1 4 4 H 1.09007 * 109.48506 * 305.02436 * 3 2 1 5 5 C 1.53088 * 109.48348 * 185.00190 * 3 2 1 6 6 C 1.53171 * 109.16895 * 182.39915 * 5 3 2 7 7 H 1.09001 * 109.54213 * 297.11201 * 6 5 3 8 8 C 1.53005 * 109.54851 * 176.84672 * 6 5 3 9 9 C 1.50697 * 109.47253 * 175.00055 * 8 6 5 10 10 O 1.21277 * 119.99890 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99884 * 180.02562 * 9 8 6 12 12 C 1.46494 * 119.99990 * 174.84014 * 11 9 8 13 13 C 1.53006 * 112.94360 * 292.70847 * 12 11 9 14 14 C 1.53000 * 109.46826 * 304.09488 * 13 12 11 15 15 O 1.42903 * 109.46893 * 175.20718 * 14 13 12 16 16 C 1.53948 * 113.74204 * 160.97913 * 12 11 9 17 17 N 1.47584 * 86.11523 * 222.04496 * 16 12 11 18 18 C 1.36936 * 134.49183 * 204.63920 * 17 16 12 19 19 H 1.08005 * 120.00225 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00098 * 359.97438 * 18 17 16 21 21 N 1.31612 * 120.00076 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99951 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46860 * 60.00516 * 22 20 18 24 24 H 1.48508 * 109.46604 * 180.02562 * 22 20 18 25 25 H 1.48490 * 109.47284 * 299.99905 * 22 20 18 26 26 C 1.47583 * 91.01564 * 24.63959 * 17 16 12 27 27 C 1.53185 * 109.03708 * 56.97826 * 6 5 3 28 28 C 1.53092 * 109.16116 * 303.02584 * 27 6 5 29 29 O 1.42901 * 109.41725 * 57.60486 * 28 27 6 30 30 H 1.09008 * 109.46755 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47491 * 299.99578 * 1 2 3 32 32 H 1.09003 * 109.47646 * 60.00376 * 1 2 3 33 33 H 1.09001 * 109.47145 * 240.00898 * 2 1 3 34 34 H 1.08990 * 109.47713 * 119.99907 * 2 1 3 35 35 H 1.09008 * 109.52428 * 62.48764 * 5 3 2 36 36 H 1.09006 * 109.52184 * 302.30475 * 5 3 2 37 37 H 1.09002 * 109.46784 * 295.00283 * 8 6 5 38 38 H 1.09002 * 109.46886 * 54.99687 * 8 6 5 39 39 H 0.97003 * 119.99845 * 354.83120 * 11 9 8 40 40 H 1.08996 * 109.47103 * 64.09837 * 13 12 11 41 41 H 1.09003 * 109.46966 * 184.09661 * 13 12 11 42 42 H 1.08999 * 109.47334 * 295.20965 * 14 13 12 43 43 H 1.09003 * 109.47053 * 55.21611 * 14 13 12 44 44 H 0.96704 * 114.00205 * 180.02562 * 15 14 13 45 45 H 1.09003 * 113.76577 * 336.33996 * 16 12 11 46 46 H 1.08991 * 113.77265 * 107.74461 * 16 12 11 47 47 H 0.97005 * 120.00367 * 180.02562 * 21 20 18 48 48 H 1.09002 * 113.76615 * 221.06108 * 26 17 16 49 49 H 1.08994 * 113.76962 * 89.65916 * 26 17 16 50 50 H 1.08997 * 109.51794 * 62.92895 * 27 6 5 51 51 H 1.08998 * 109.52244 * 183.11412 * 27 6 5 52 52 H 1.09000 * 109.47839 * 297.62140 * 28 27 6 53 53 H 1.09001 * 109.48689 * 177.60040 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6050 1.9819 -0.8415 5 6 3.5656 1.4448 -0.1258 6 6 4.0731 2.8887 -0.0648 7 1 3.6789 3.4499 -0.9120 8 6 5.6025 2.8962 -0.1108 9 6 6.0962 4.3186 -0.1745 10 8 5.3030 5.2359 -0.1829 11 7 7.4192 4.5711 -0.2233 12 6 7.8967 5.9448 -0.3991 13 6 7.5597 6.5219 -1.7755 14 6 8.1214 5.6052 -2.8641 15 8 7.7120 6.0831 -4.1472 16 6 9.3641 6.1492 0.0190 17 7 8.9082 7.4109 0.6342 18 6 9.5136 8.5974 0.9517 19 1 8.9410 9.3902 1.4101 20 6 10.8633 8.7813 0.6844 21 7 11.5610 7.8155 0.1254 22 14 11.6890 10.4002 1.1169 23 1 11.5771 10.6379 2.5784 24 1 13.1223 10.3430 0.7324 25 1 11.0240 11.5066 0.3830 26 6 7.5378 6.8801 0.7698 27 6 3.5966 3.5310 1.2417 28 6 2.0697 3.4482 1.3147 29 8 1.6631 2.0814 1.2215 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8533 0.9975 -1.0773 36 1 3.9995 0.8713 0.6933 37 1 5.9952 2.4150 0.7850 38 1 5.9421 2.3538 -0.9932 39 1 8.0552 3.8432 -0.1419 40 1 6.4776 6.5943 -1.8841 41 1 8.0017 7.5136 -1.8718 42 1 9.2100 5.5999 -2.8087 43 1 7.7451 4.5929 -2.7166 44 1 8.0325 5.5486 -4.8866 45 1 9.7223 5.4136 0.7392 46 1 10.0445 6.2907 -0.8207 47 1 12.5043 7.9438 -0.0611 48 1 6.7602 7.6052 0.5296 49 1 7.3596 6.3592 1.7105 50 1 4.0312 2.9997 2.0884 51 1 3.9065 4.5757 1.2682 52 1 1.6352 4.0137 0.4904 53 1 1.7278 3.8655 2.2618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570767309.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -124.760105 kcal Electronic energy + Delta-G solvation = -31145.327027 eV Core-core repulsion = 27016.954764 eV Total energy + Delta-G solvation = -4128.372263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.57266 -40.55556 -39.25015 -37.70760 -35.62301 -35.17628 -34.82524 -33.77984 -31.96269 -30.71133 -29.82132 -28.86020 -26.85273 -25.59167 -24.78008 -24.33723 -23.29774 -22.21548 -21.43698 -20.74145 -20.07570 -18.78737 -18.44469 -17.99431 -17.32909 -17.13778 -16.77207 -16.66797 -16.51410 -15.94663 -15.71005 -15.59926 -15.43586 -15.07795 -14.78291 -14.50237 -14.43343 -14.24495 -14.01460 -13.65234 -13.55692 -13.32048 -13.15251 -12.97458 -12.77583 -12.69180 -12.61822 -12.58410 -12.40558 -12.24635 -12.10472 -11.98606 -11.92396 -11.72973 -11.68665 -11.41026 -11.33952 -11.12337 -10.95913 -10.86275 -10.58711 -10.25838 -9.95753 -8.97496 -7.94665 -5.27781 1.44476 1.47558 1.53374 1.80876 2.20307 2.49541 2.90405 3.14759 3.25523 3.38103 3.61527 3.69199 3.74568 3.86086 4.06151 4.11743 4.12982 4.26422 4.27653 4.33003 4.36406 4.44481 4.48030 4.49071 4.57216 4.60501 4.71511 4.71648 4.75298 4.80449 4.85194 4.88911 4.95186 5.01950 5.04427 5.08779 5.12785 5.14866 5.18230 5.20979 5.23051 5.26802 5.35802 5.46247 5.47768 5.50620 5.76556 5.89046 6.37483 6.73595 6.89209 6.91468 7.45163 7.55182 8.48843 9.21859 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019793 B = 0.002358 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.304442 B =11872.389454 C =12652.535366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.082 3.918 4 H 0.052 0.948 5 C -0.137 4.137 6 C -0.070 4.070 7 H 0.061 0.939 8 C -0.126 4.126 9 C 0.508 3.492 10 O -0.570 6.570 11 N -0.709 5.709 12 C 0.158 3.842 13 C -0.087 4.087 14 C 0.092 3.908 15 O -0.593 6.593 16 C 0.172 3.828 17 N -0.634 5.634 18 C -0.239 4.239 19 H 0.077 0.923 20 C -0.058 4.058 21 N -0.946 5.946 22 Si 0.978 3.022 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.129 3.871 27 C -0.152 4.152 28 C 0.065 3.935 29 O -0.394 6.394 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.414 0.586 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.397 0.603 45 H 0.033 0.967 46 H 0.058 0.942 47 H 0.252 0.748 48 H 0.036 0.964 49 H 0.038 0.962 50 H 0.067 0.933 51 H 0.068 0.932 52 H 0.044 0.956 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 -20.406 -4.231 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C 0.025 3.975 4 H 0.070 0.930 5 C -0.175 4.175 6 C -0.089 4.089 7 H 0.080 0.920 8 C -0.165 4.165 9 C 0.296 3.704 10 O -0.448 6.448 11 N -0.363 5.363 12 C 0.070 3.930 13 C -0.126 4.126 14 C 0.015 3.985 15 O -0.402 6.402 16 C 0.046 3.954 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.252 4.252 21 N -0.595 5.595 22 Si 0.806 3.194 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.003 3.997 27 C -0.190 4.190 28 C -0.012 4.012 29 O -0.314 6.314 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.251 0.749 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.247 0.753 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.062 0.938 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.969 -19.180 -3.722 25.234 hybrid contribution 1.435 0.890 0.107 1.692 sum -14.534 -18.290 -3.615 23.640 Atomic orbital electron populations 1.21715 0.95554 1.01942 1.01548 1.21570 0.96493 0.93480 1.03489 1.22312 0.94199 0.94546 0.86438 0.93032 1.22247 0.95480 0.95556 1.04169 1.20889 0.93713 0.96499 0.97776 0.92013 1.21768 0.96366 0.91758 1.06617 1.21374 0.81665 0.92729 0.74593 1.90662 1.55420 1.48369 1.50378 1.46020 1.07592 1.08546 1.74108 1.22094 0.95449 0.81902 0.93571 1.21163 1.00673 0.98848 0.91925 1.21961 0.97762 0.96543 0.82256 1.86440 1.78655 1.58439 1.16652 1.22419 0.91427 0.86120 0.95427 1.45998 1.06823 1.11358 1.71898 1.19256 0.92783 0.90336 1.34304 0.90501 1.25552 0.96646 1.01423 1.01592 1.69924 1.07651 1.33358 1.48526 0.85174 0.77148 0.79128 0.77999 1.20458 1.21464 1.20574 1.22819 0.87451 0.93927 0.95517 1.22280 0.96494 1.02186 0.98033 1.22517 0.94031 0.82664 1.01969 1.87882 1.79028 1.24987 1.39503 0.91679 0.93553 0.92885 0.88740 0.91293 0.88749 0.90309 0.86935 0.85937 0.74878 0.92088 0.93343 0.93664 0.91530 0.75340 0.94947 0.92374 0.93932 0.94563 0.94423 0.91477 0.91346 0.93812 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.81 71.98 0.71 -1.23 16 2 C -0.11 -1.39 5.64 30.59 0.17 -1.21 16 3 C 0.08 1.32 2.64 30.62 0.08 1.40 16 4 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 5 C -0.14 -1.83 4.70 30.68 0.14 -1.69 16 6 C -0.07 -1.27 1.92 -10.67 -0.02 -1.29 16 7 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 8 C -0.13 -2.01 5.18 29.85 0.15 -1.86 16 9 C 0.51 13.24 7.24 87.66 0.63 13.87 16 10 O -0.57 -19.68 12.47 -3.02 -0.04 -19.71 16 11 N -0.71 -18.92 4.46 -427.56 -1.91 -20.83 16 12 C 0.16 5.85 0.67 5.36 0.00 5.85 16 13 C -0.09 -3.34 4.86 30.60 0.15 -3.19 16 14 C 0.09 2.80 6.86 71.98 0.49 3.29 16 15 O -0.59 -17.55 13.66 -148.98 -2.04 -19.58 16 16 C 0.17 7.72 6.72 86.48 0.58 8.30 16 17 N -0.63 -33.14 3.54 -716.14 -2.54 -35.68 16 18 C -0.24 -13.69 10.70 84.03 0.90 -12.79 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 20 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 21 N -0.95 -55.46 11.38 21.65 0.25 -55.21 16 22 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 C 0.13 5.74 7.38 86.48 0.64 6.38 16 27 C -0.15 -3.32 5.13 30.69 0.16 -3.16 16 28 C 0.06 1.36 6.84 72.01 0.49 1.85 16 29 O -0.39 -8.27 9.94 -148.98 -1.48 -9.75 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.41 8.27 8.72 -92.71 -0.81 7.47 16 40 H 0.06 2.46 7.27 -2.39 -0.02 2.44 16 41 H 0.05 2.24 8.02 -2.39 -0.02 2.22 16 42 H 0.05 1.42 7.62 -2.39 -0.02 1.40 16 43 H 0.07 1.62 7.53 -2.39 -0.02 1.60 16 44 H 0.40 7.07 9.12 -74.05 -0.68 6.40 16 45 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 2.89 6.60 -2.39 -0.02 2.87 16 47 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 48 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 49 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.07 1.90 6.07 -2.39 -0.01 1.89 16 52 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.17 413.09 -0.56 -74.73 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.59 Total: 26.41 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.75 Total: 11.67 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -4.20 Total: -111.72 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -3.55 Total: -49.05 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.17 -0.56 -74.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570767309.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.033 kcal (2) G-P(sol) polarization free energy of solvation -74.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds