Wall clock time and date at job start Sat Apr 11 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37100 * 120.00147 * 2 1 4 4 H 1.07999 * 119.99839 * 149.84035 * 3 2 1 5 5 C 1.38949 * 120.00165 * 329.85005 * 3 2 1 6 6 N 1.31410 * 120.00440 * 164.43359 * 5 3 2 7 7 Si 1.86807 * 119.99708 * 344.42825 * 5 3 2 8 8 H 1.48496 * 109.46824 * 85.67129 * 7 5 3 9 9 H 1.48502 * 109.46919 * 205.67315 * 7 5 3 10 10 H 1.48495 * 109.47050 * 325.67056 * 7 5 3 11 11 C 1.34781 * 120.00089 * 180.02562 * 2 1 3 12 12 O 1.21295 * 120.00149 * 184.55313 * 11 2 1 13 13 C 1.50693 * 119.99699 * 4.55231 * 11 2 1 14 14 H 1.08999 * 108.77162 * 300.98238 * 13 11 2 15 15 C 1.50396 * 108.77193 * 59.51644 * 13 11 2 16 16 C 1.54243 * 108.42799 * 215.01262 * 15 13 11 17 17 C 1.45540 * 112.40596 * 280.03096 * 16 15 13 18 18 C 1.54242 * 112.40552 * 61.93967 * 17 16 15 19 19 C 1.50478 * 108.51699 * 280.00789 * 18 17 16 20 20 C 1.54062 * 112.49795 * 94.15002 * 19 18 17 21 21 H 1.09002 * 108.81241 * 79.14625 * 20 19 18 22 22 N 1.46494 * 108.81580 * 197.53326 * 20 19 18 23 23 C 1.34777 * 120.00307 * 276.59761 * 22 20 19 24 24 O 1.21521 * 119.99498 * 359.97438 * 23 22 20 25 25 O 1.34626 * 120.00256 * 180.02562 * 23 22 20 26 26 C 1.45208 * 116.99878 * 179.97438 * 25 23 22 27 27 C 1.52995 * 109.47040 * 59.99834 * 26 25 23 28 28 C 1.53006 * 109.46868 * 180.02562 * 26 25 23 29 29 C 1.52999 * 109.47059 * 299.99474 * 26 25 23 30 30 H 1.08999 * 109.47345 * 211.12187 * 1 2 3 31 31 H 1.08999 * 109.47417 * 331.12652 * 1 2 3 32 32 H 1.09007 * 109.47084 * 91.12254 * 1 2 3 33 33 H 0.96993 * 120.00321 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.65955 * 95.34045 * 15 13 11 35 35 H 1.08996 * 109.69128 * 334.70296 * 15 13 11 36 36 H 1.08994 * 108.89468 * 159.28010 * 16 15 13 37 37 H 1.09004 * 108.81474 * 40.73533 * 16 15 13 38 38 H 1.08993 * 108.90283 * 301.18095 * 17 16 15 39 39 H 1.08998 * 108.81784 * 182.63276 * 17 16 15 40 40 H 1.09004 * 109.62784 * 160.30419 * 18 17 16 41 41 H 1.08996 * 109.63390 * 39.72048 * 18 17 16 42 42 H 1.09007 * 108.87416 * 333.37801 * 19 18 17 43 43 H 1.08994 * 108.88086 * 214.93373 * 19 18 17 44 44 H 0.97005 * 119.99974 * 96.59413 * 22 20 19 45 45 H 1.09006 * 109.47198 * 60.00557 * 27 26 25 46 46 H 1.09006 * 109.47007 * 179.97438 * 27 26 25 47 47 H 1.08992 * 109.47308 * 299.99517 * 27 26 25 48 48 H 1.08995 * 109.47298 * 59.99557 * 28 26 25 49 49 H 1.09006 * 109.47009 * 180.02562 * 28 26 25 50 50 H 1.08999 * 109.46887 * 299.99667 * 28 26 25 51 51 H 1.09001 * 109.46643 * 60.00264 * 29 26 25 52 52 H 1.08997 * 109.46811 * 180.02562 * 29 26 25 53 53 H 1.08995 * 109.47161 * 300.00475 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1208 1.2506 0.4699 5 6 1.5968 2.3093 -0.6044 6 7 2.0873 3.5017 -0.3508 7 14 0.1551 2.1225 -1.7776 8 1 -1.1129 2.1061 -1.0049 9 1 0.1403 3.2625 -2.7291 10 1 0.2920 0.8504 -2.5313 11 6 2.1389 -1.1672 -0.0005 12 8 3.3489 -1.1689 0.0829 13 6 1.3889 -2.4701 -0.1047 14 1 0.6942 -2.5428 0.7321 15 6 0.6078 -2.4776 -1.3899 16 6 -0.7187 -3.2271 -1.1499 17 6 -0.5536 -4.6727 -1.1869 18 6 0.3956 -5.1844 -0.0841 19 6 1.8143 -4.9634 -0.5343 20 6 2.3959 -3.6331 -0.0190 21 1 2.6979 -3.7607 1.0205 22 7 3.5778 -3.2942 -0.8154 23 6 4.7747 -3.8319 -0.5075 24 8 4.8735 -4.5976 0.4310 25 8 5.8610 -3.5201 -1.2391 26 6 7.1170 -4.1361 -0.8497 27 6 6.9867 -5.6581 -0.9354 28 6 8.2289 -3.6651 -1.7894 29 6 7.4590 -3.7334 0.5862 30 1 -0.3634 -0.8797 0.5311 31 1 -0.3634 0.8999 0.4962 32 1 -0.3634 -0.0201 -1.0275 33 1 1.7010 4.2849 -0.7730 34 1 1.1812 -2.9868 -2.1646 35 1 0.3989 -1.4533 -1.6986 36 1 -1.4339 -2.9338 -1.9183 37 1 -1.1124 -2.9416 -0.1744 38 1 -0.1512 -4.9573 -2.1590 39 1 -1.5292 -5.1414 -1.0582 40 1 0.2253 -6.2484 0.0808 41 1 0.2145 -4.6343 0.8392 42 1 1.8423 -4.9620 -1.6240 43 1 2.4322 -5.7836 -0.1687 44 1 3.4991 -2.6828 -1.5643 45 1 6.7432 -5.9449 -1.9584 46 1 7.9297 -6.1205 -0.6435 47 1 6.1948 -5.9932 -0.2657 48 1 8.3215 -2.5808 -1.7280 49 1 9.1717 -4.1278 -1.4974 50 1 7.9855 -3.9516 -2.8125 51 1 6.6669 -4.0686 1.2559 52 1 8.4020 -4.1955 0.8782 53 1 7.5517 -2.6491 0.6472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631669163.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:53 Heat of formation + Delta-G solvation = -123.689689 kcal Electronic energy + Delta-G solvation = -33018.217476 eV Core-core repulsion = 28889.891630 eV Total energy + Delta-G solvation = -4128.325846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.06850 -41.21641 -39.14872 -38.01236 -36.89942 -35.45946 -34.78458 -34.28936 -32.99379 -31.71550 -28.36184 -28.29457 -28.24483 -27.43535 -25.83644 -25.40100 -23.36985 -21.57495 -21.47354 -20.89167 -19.91468 -19.15276 -19.05781 -17.97779 -17.59717 -17.31527 -16.96325 -16.74020 -16.22422 -16.02707 -15.59207 -15.37105 -15.20088 -14.94131 -14.77362 -14.59216 -14.45541 -14.20439 -14.00008 -13.87274 -13.59373 -13.54174 -13.32393 -13.14911 -12.95452 -12.87771 -12.84201 -12.66125 -12.44228 -12.41745 -12.30170 -12.24597 -11.75208 -11.70815 -11.64556 -11.54315 -11.35240 -11.26524 -11.15607 -11.06375 -10.99810 -10.34935 -9.76407 -9.67603 -8.47018 -6.10693 1.23791 1.33543 1.33878 1.45399 1.92813 1.97288 2.20149 2.66916 3.00727 3.25484 3.50185 3.67566 3.77570 3.81795 3.83760 3.96300 4.05171 4.16907 4.20032 4.29241 4.35868 4.44450 4.48927 4.52039 4.54894 4.61232 4.65659 4.74276 4.74875 4.75347 4.83182 4.86759 4.89417 5.00363 5.06335 5.07994 5.16813 5.24229 5.28065 5.30436 5.37350 5.40818 5.42082 5.49956 5.53331 5.57560 5.63954 5.70443 6.02996 6.50862 6.57755 6.94640 7.32813 7.48979 7.88604 8.70891 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.004494 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.018641 B = 6229.007161 C = 8275.176847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.480 5.480 3 C -0.329 4.329 4 H 0.041 0.959 5 C 0.001 3.999 6 N -0.925 5.925 7 Si 0.963 3.037 8 H -0.236 1.236 9 H -0.299 1.299 10 H -0.250 1.250 11 C 0.455 3.545 12 O -0.600 6.600 13 C -0.092 4.092 14 H 0.123 0.877 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.114 4.114 20 C 0.190 3.810 21 H 0.059 0.941 22 N -0.675 5.675 23 C 0.652 3.348 24 O -0.601 6.601 25 O -0.380 6.380 26 C 0.121 3.879 27 C -0.172 4.172 28 C -0.135 4.135 29 C -0.178 4.178 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.278 0.722 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.401 0.599 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.108 0.892 50 H 0.072 0.928 51 H 0.059 0.941 52 H 0.097 0.903 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -20.066 -5.034 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.202 5.202 3 C -0.457 4.457 4 H 0.059 0.941 5 C -0.199 4.199 6 N -0.564 5.564 7 Si 0.785 3.215 8 H -0.160 1.160 9 H -0.227 1.227 10 H -0.174 1.174 11 C 0.245 3.755 12 O -0.484 6.484 13 C -0.114 4.114 14 H 0.141 0.859 15 C -0.159 4.159 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.153 4.153 20 C 0.086 3.914 21 H 0.077 0.923 22 N -0.331 5.331 23 C 0.405 3.595 24 O -0.493 6.493 25 O -0.295 6.295 26 C 0.084 3.916 27 C -0.229 4.229 28 C -0.192 4.192 29 C -0.235 4.235 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.236 0.764 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.127 0.873 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.116 0.884 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.047 -20.220 -4.543 21.116 hybrid contribution 0.264 1.405 -0.286 1.458 sum -3.783 -18.815 -4.830 19.790 Atomic orbital electron populations 1.22485 0.80511 1.04537 1.02190 1.43734 1.05738 1.04602 1.66148 1.18718 1.03642 0.86871 1.36444 0.94093 1.26218 1.01878 0.93675 0.98112 1.69848 1.44626 0.99045 1.42913 0.85843 0.79141 0.77773 0.78696 1.15988 1.22671 1.17404 1.21223 0.87919 0.86043 0.80311 1.90600 1.16328 1.87602 1.53842 1.21408 0.97420 0.89914 1.02646 0.85942 1.21593 0.97481 1.01851 0.94946 1.20518 0.95184 0.95772 1.03519 1.20485 1.00334 0.95589 0.98703 1.21338 0.92365 1.02116 0.99266 1.21690 0.97762 0.94213 1.01648 1.21218 0.82128 0.93441 0.94651 0.92313 1.44668 1.05149 1.48184 1.35114 1.18108 0.81600 0.79339 0.80433 1.90794 1.85768 1.40943 1.31835 1.86318 1.17635 1.68758 1.56825 1.22412 0.79721 0.93735 0.95683 1.22414 1.04501 0.93062 1.02905 1.21883 0.96205 1.02107 0.99032 1.22449 1.03643 1.01103 0.96323 0.87622 0.91445 0.91683 0.91256 0.90903 0.91693 0.90304 0.90633 0.91993 0.90106 0.90104 0.91224 0.91010 0.92586 0.76378 0.91661 0.88749 0.91798 0.92588 0.87336 0.90859 0.92221 0.88418 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 6.63 127.77 0.85 2.38 16 2 N -0.48 -22.28 2.64 -658.90 -1.74 -24.02 16 3 C -0.33 -19.24 9.59 84.04 0.81 -18.43 16 4 H 0.04 2.88 7.72 -2.91 -0.02 2.86 16 5 C 0.00 0.08 5.31 84.93 0.45 0.53 16 6 N -0.93 -55.89 13.96 21.66 0.30 -55.59 16 7 Si 0.96 40.29 23.98 68.60 1.65 41.94 16 8 H -0.24 -8.42 6.65 99.48 0.66 -7.76 16 9 H -0.30 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.25 -9.62 6.57 99.48 0.65 -8.97 16 11 C 0.46 20.05 6.47 87.65 0.57 20.62 16 12 O -0.60 -32.25 13.57 -3.08 -0.04 -32.29 16 13 C -0.09 -2.75 1.07 -12.02 -0.01 -2.76 16 14 H 0.12 3.05 5.66 -2.39 -0.01 3.03 16 15 C -0.12 -2.91 4.37 30.17 0.13 -2.78 16 16 C -0.11 -1.77 5.26 28.74 0.15 -1.62 16 17 C -0.11 -1.54 5.26 28.74 0.15 -1.39 16 18 C -0.11 -1.83 5.61 30.20 0.17 -1.66 16 19 C -0.11 -2.61 4.85 30.14 0.15 -2.46 16 20 C 0.19 5.87 1.93 45.71 0.09 5.95 16 21 H 0.06 2.13 7.54 -2.39 -0.02 2.11 16 22 N -0.68 -24.54 2.95 -566.69 -1.67 -26.22 16 23 C 0.65 25.34 7.98 129.79 1.04 26.38 16 24 O -0.60 -24.32 11.52 19.78 0.23 -24.09 16 25 O -0.38 -14.03 9.94 -55.35 -0.55 -14.58 16 26 C 0.12 3.48 1.13 -10.79 -0.01 3.47 16 27 C -0.17 -4.20 8.37 71.98 0.60 -3.60 16 28 C -0.14 -2.95 8.85 71.98 0.64 -2.31 16 29 C -0.18 -5.39 8.37 71.98 0.60 -4.79 16 30 H 0.11 2.67 5.99 -2.39 -0.01 2.65 16 31 H 0.07 2.44 6.43 -2.39 -0.02 2.42 16 32 H 0.07 2.03 3.59 -2.38 -0.01 2.03 16 33 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.07 1.72 6.98 -2.38 -0.02 1.70 16 35 H 0.06 1.82 4.98 -2.39 -0.01 1.81 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.04 7.10 -2.39 -0.02 1.03 16 38 H 0.06 0.86 7.47 -2.39 -0.02 0.84 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.07 1.14 6.97 -2.39 -0.02 1.12 16 42 H 0.07 1.56 6.62 -2.38 -0.02 1.54 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.40 15.09 7.78 -92.70 -0.72 14.37 16 45 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 47 H 0.06 1.91 5.88 -2.39 -0.01 1.89 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 50 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.06 2.16 5.88 -2.39 -0.01 2.14 16 52 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -79.14 384.40 4.64 -74.51 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: 0.10 Total: 42.82 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 6.36 Total: 17.53 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -3.11 Total: -105.82 kcal Atomic # 8 Polarization: -70.60 SS G_CDS: -0.36 Total: -70.97 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.65 Total: 41.94 kcal Total: -79.14 4.64 -74.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631669163.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.184 kcal (2) G-P(sol) polarization free energy of solvation -79.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds