Wall clock time and date at job start Sat Apr 11 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46505 * 119.99722 * 179.72257 * 8 6 5 10 10 C 1.52999 * 109.47189 * 180.02562 * 9 8 6 11 11 C 1.52995 * 112.84986 * 180.02562 * 10 9 8 12 12 N 1.46902 * 109.46997 * 309.66216 * 11 10 9 13 13 C 1.47476 * 111.00102 * 265.97710 * 12 11 10 14 14 C 1.53517 * 87.92873 * 221.29504 * 13 12 11 15 15 O 1.42902 * 114.17275 * 272.37466 * 14 13 12 16 16 C 1.50703 * 114.16908 * 139.67412 * 14 13 12 17 17 H 1.08003 * 119.99723 * 266.15983 * 16 14 13 18 18 C 1.37876 * 120.00310 * 86.15596 * 16 14 13 19 19 N 1.31507 * 120.00168 * 0.02562 * 18 16 14 20 20 Si 1.86807 * 119.99885 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46889 * 90.00317 * 20 18 16 22 22 H 1.48498 * 109.46639 * 210.00346 * 20 18 16 23 23 H 1.48497 * 109.46935 * 330.00132 * 20 18 16 24 24 C 1.47481 * 110.99957 * 169.99990 * 12 11 10 25 25 C 1.53779 * 113.61509 * 48.80533 * 10 9 8 26 26 C 1.53956 * 87.02147 * 220.05208 * 25 10 9 27 27 C 1.53775 * 87.11173 * 25.36338 * 26 25 10 28 28 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 29 29 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 30 30 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 33 33 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 34 34 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 35 35 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 36 36 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00483 * 359.73141 * 8 6 5 38 38 H 1.08995 * 109.47192 * 300.00563 * 9 8 6 39 39 H 1.09001 * 109.46711 * 60.00584 * 9 8 6 40 40 H 1.08996 * 109.47469 * 69.66881 * 11 10 9 41 41 H 1.09007 * 109.46786 * 189.66950 * 11 10 9 42 42 H 1.08997 * 113.47846 * 336.05541 * 13 12 11 43 43 H 1.08998 * 113.48119 * 106.53631 * 13 12 11 44 44 H 0.96704 * 113.99927 * 273.84757 * 15 14 13 45 45 H 0.97001 * 120.00691 * 179.97438 * 19 18 16 46 46 H 1.08998 * 113.47657 * 253.47091 * 24 12 11 47 47 H 1.09001 * 113.47284 * 23.88570 * 24 12 11 48 48 H 1.09004 * 113.61126 * 334.57222 * 25 10 9 49 49 H 1.08995 * 113.61528 * 105.46923 * 25 10 9 50 50 H 1.09002 * 113.53595 * 270.81044 * 26 25 10 51 51 H 1.08997 * 113.74321 * 139.94431 * 26 25 10 52 52 H 1.09007 * 113.61595 * 220.09523 * 27 26 25 53 53 H 1.09000 * 113.61405 * 89.18984 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6643 -4.0633 2.5893 10 6 2.2592 -4.6094 3.8887 11 6 1.8900 -6.0723 4.1425 12 7 0.4377 -6.2424 4.0006 13 6 -0.2382 -6.1248 5.3061 14 6 -1.1277 -7.3045 4.8891 15 8 -2.2992 -6.9262 4.1636 16 6 -1.4016 -8.2916 5.9944 17 1 -0.7758 -9.1649 6.1058 18 6 -2.4508 -8.0800 6.8635 19 7 -3.2130 -7.0170 6.7276 20 14 -2.7906 -9.3041 8.2331 21 1 -2.0311 -8.9117 9.4473 22 1 -4.2436 -9.3131 8.5395 23 1 -2.3674 -10.6603 7.8011 24 6 0.0703 -7.6707 4.0018 25 6 2.0283 -3.6957 5.1038 26 6 3.4665 -4.0379 5.5333 27 6 3.7603 -4.3165 4.0498 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7216 -1.2488 37 1 2.6225 -2.2349 3.0862 38 1 0.5771 -4.1287 2.6321 39 1 2.0307 -4.6499 1.7468 40 1 2.4025 -6.7071 3.4198 41 1 2.1918 -6.3534 5.1515 42 1 0.4107 -6.3484 6.1528 43 1 -0.7858 -5.1904 5.4290 44 1 -3.0523 -6.6960 4.7249 45 1 -3.9514 -6.8682 7.3388 46 1 -0.2158 -8.0463 3.0194 47 1 0.8021 -8.3069 4.4996 48 1 1.8888 -2.6470 4.8412 49 1 1.2668 -4.0660 5.7901 50 1 3.5330 -4.9235 6.1654 51 1 4.0183 -3.1884 5.9357 52 1 4.3951 -5.1874 3.8864 53 1 4.0954 -3.4378 3.4986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645811437.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:59 Heat of formation + Delta-G solvation = -94.129631 kcal Electronic energy + Delta-G solvation = -31441.186957 eV Core-core repulsion = 27314.142931 eV Total energy + Delta-G solvation = -4127.044026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.99824 -41.36584 -40.00049 -38.14058 -36.13314 -35.57198 -34.64704 -34.08858 -31.38163 -29.01290 -28.35503 -28.27385 -27.41551 -27.00037 -26.24187 -24.62795 -23.13432 -23.06795 -21.06176 -20.49050 -19.47592 -19.34304 -18.77640 -17.64252 -17.29731 -17.14292 -16.90657 -16.49471 -16.28380 -15.95611 -15.62308 -15.58570 -15.47709 -14.83479 -14.74299 -14.54714 -14.28275 -14.03250 -13.83635 -13.51607 -13.34720 -13.32587 -13.14795 -13.05842 -12.89336 -12.85088 -12.83268 -12.73237 -12.49439 -12.40167 -12.28977 -12.24923 -12.20880 -11.81794 -11.43555 -11.37991 -11.19719 -11.11135 -11.08067 -10.95647 -10.62213 -10.18305 -10.00875 -9.58678 -8.24464 -6.42110 1.18083 1.41363 1.44049 1.54049 1.78699 2.36953 2.96365 3.14028 3.19296 3.51227 3.70730 3.72982 3.77357 3.81433 3.92572 3.96392 4.02970 4.13571 4.25631 4.33853 4.49309 4.52656 4.60685 4.62387 4.65485 4.71342 4.72242 4.77410 4.79390 4.83894 4.85995 4.89223 4.89722 4.94388 4.97926 5.07242 5.12442 5.14940 5.21623 5.24909 5.29892 5.35562 5.40997 5.45247 5.46491 5.58725 5.60510 5.76396 5.98261 6.37565 6.43338 6.64003 7.30970 7.36937 7.57335 8.80436 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.002575 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.066215 B =10871.423741 C =11685.292188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.179 4.179 5 O -0.368 6.368 6 C 0.643 3.357 7 O -0.595 6.595 8 N -0.696 5.696 9 C 0.172 3.828 10 C -0.078 4.078 11 C 0.043 3.957 12 N -0.470 5.470 13 C 0.003 3.997 14 C 0.214 3.786 15 O -0.585 6.585 16 C -0.554 4.554 17 H 0.067 0.933 18 C 0.025 3.975 19 N -0.920 5.920 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.269 1.269 24 C 0.012 3.988 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.120 4.120 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.413 0.587 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.382 0.618 45 H 0.273 0.727 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.049 0.951 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.081 0.919 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.175 14.512 -7.395 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.283 6.283 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.357 5.357 9 C 0.049 3.951 10 C -0.079 4.079 11 C -0.086 4.086 12 N -0.192 5.192 13 C -0.127 4.127 14 C 0.173 3.827 15 O -0.397 6.397 16 C -0.592 4.592 17 H 0.085 0.915 18 C -0.175 4.175 19 N -0.562 5.562 20 Si 0.793 3.207 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.116 4.116 25 C -0.180 4.180 26 C -0.167 4.167 27 C -0.158 4.158 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.252 0.748 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.237 0.763 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.068 0.932 50 H 0.097 0.903 51 H 0.106 0.894 52 H 0.100 0.900 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.906 14.743 -8.862 23.428 hybrid contribution -0.717 -0.959 2.067 2.388 sum 15.189 13.785 -6.795 21.608 Atomic orbital electron populations 1.22491 0.94568 1.03376 1.03529 1.22426 0.94222 0.92972 0.81608 1.21874 1.02575 0.90251 1.04323 1.22463 1.01769 1.02044 0.97329 1.86294 1.71618 1.22813 1.47537 1.18278 0.78757 0.80906 0.82473 1.90917 1.42062 1.71104 1.44557 1.44809 1.55113 1.12890 1.22906 1.20771 0.99188 0.77939 0.97190 1.21939 0.97553 0.94817 0.93584 1.22458 0.90162 0.94934 1.01050 1.68781 1.08523 1.15127 1.26755 1.24384 0.97686 1.00135 0.90501 1.19797 0.83004 0.91080 0.88775 1.86027 1.24687 1.89753 1.39243 1.21849 1.15088 1.09279 1.12991 0.91524 1.25835 0.95049 0.96851 0.99735 1.69380 1.19158 1.28159 1.39491 0.85402 0.77357 0.79144 0.78795 1.19723 1.20775 1.19321 1.23965 0.96869 0.90874 0.99928 1.23130 0.98413 0.99401 0.97036 1.22811 0.95086 1.02349 0.96418 1.23021 0.93315 1.02792 0.96689 0.92182 0.88917 0.92610 0.90807 0.87907 0.91302 0.92424 0.89033 0.91540 0.74831 0.93108 0.92177 0.89902 0.92680 0.92104 0.93864 0.76324 0.91680 0.91588 0.90180 0.89580 0.93175 0.90318 0.89443 0.89987 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.37 71.98 0.60 -3.41 16 2 C 0.12 2.52 1.13 -10.79 -0.01 2.51 16 3 C -0.13 -1.69 8.85 71.98 0.64 -1.05 16 4 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 5 O -0.37 -9.15 9.94 -55.47 -0.55 -9.71 16 6 C 0.64 19.02 8.06 129.79 1.05 20.07 16 7 O -0.60 -21.52 11.88 19.80 0.24 -21.28 16 8 N -0.70 -17.84 4.72 -590.84 -2.79 -20.63 16 9 C 0.17 5.11 5.00 86.38 0.43 5.54 16 10 C -0.08 -1.99 1.09 -51.66 -0.06 -2.04 16 11 C 0.04 1.29 4.19 86.30 0.36 1.66 16 12 N -0.47 -18.72 5.46 -928.19 -5.07 -23.78 16 13 C 0.00 0.12 5.81 83.58 0.49 0.60 16 14 C 0.21 10.94 1.57 -11.19 -0.02 10.92 16 15 O -0.59 -33.11 13.54 -148.98 -2.02 -35.13 16 16 C -0.55 -29.39 8.69 25.60 0.22 -29.17 16 17 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 18 C 0.02 1.30 5.40 84.66 0.46 1.75 16 19 N -0.92 -50.08 11.02 21.45 0.24 -49.85 16 20 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 C 0.01 0.53 7.09 83.58 0.59 1.13 16 25 C -0.14 -3.50 6.90 31.18 0.22 -3.29 16 26 C -0.13 -2.39 7.74 31.18 0.24 -2.15 16 27 C -0.12 -2.16 6.96 31.12 0.22 -1.94 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.05 1.64 5.88 -2.39 -0.01 1.63 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.55 5.88 -2.39 -0.01 1.53 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.41 8.32 5.91 -92.71 -0.55 7.77 16 38 H 0.05 1.95 7.62 -2.39 -0.02 1.93 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 41 H 0.05 1.62 6.50 -2.38 -0.02 1.61 16 42 H 0.06 2.67 7.37 -2.39 -0.02 2.65 16 43 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 44 H 0.38 22.19 6.33 -74.05 -0.47 21.72 16 45 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 47 H 0.08 3.10 7.87 -2.39 -0.02 3.09 16 48 H 0.09 1.94 6.63 -2.38 -0.02 1.93 16 49 H 0.05 1.53 6.78 -2.39 -0.02 1.51 16 50 H 0.08 1.53 7.64 -2.39 -0.02 1.51 16 51 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.08 1.34 8.10 -2.38 -0.02 1.32 16 53 H 0.10 1.46 6.63 -2.39 -0.02 1.44 16 Total: -1.00 -64.68 405.53 -2.01 -66.69 By element: Atomic # 1 Polarization: 52.16 SS G_CDS: -0.11 Total: 52.05 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 6.03 Total: -1.81 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -7.62 Total: -94.26 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -2.33 Total: -66.11 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -64.68 -2.01 -66.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645811437.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.439 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds