Wall clock time and date at job start Sat Apr 11 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46769 * 2 1 4 4 H 1.08995 * 109.48200 * 304.98075 * 3 2 1 5 5 C 1.53087 * 109.48902 * 184.95152 * 3 2 1 6 6 C 1.53181 * 109.16473 * 182.40593 * 5 3 2 7 7 H 1.09001 * 109.61435 * 176.89118 * 6 5 3 8 8 C 1.50699 * 109.53817 * 297.11053 * 6 5 3 9 9 O 1.21280 * 120.00416 * 359.56114 * 8 6 5 10 10 N 1.34775 * 119.99542 * 179.55147 * 8 6 5 11 11 C 1.46504 * 120.00162 * 180.27780 * 10 8 6 12 12 C 1.52998 * 109.47199 * 176.46844 * 11 10 8 13 13 N 1.46496 * 109.54341 * 305.05102 * 12 11 10 14 14 C 1.36939 * 120.00256 * 301.59773 * 13 12 11 15 15 H 1.07997 * 120.00004 * 353.42315 * 14 13 12 16 16 C 1.38807 * 120.00159 * 173.42132 * 14 13 12 17 17 N 1.31620 * 120.00402 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00226 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46948 * 89.99714 * 18 16 14 20 20 H 1.48489 * 109.47301 * 209.99920 * 18 16 14 21 21 H 1.48495 * 109.46753 * 330.00360 * 18 16 14 22 22 C 1.53179 * 109.53964 * 184.87994 * 12 11 10 23 23 C 1.53111 * 109.15360 * 183.24037 * 22 12 11 24 24 O 1.42904 * 109.48759 * 57.47374 * 23 22 12 25 25 C 1.42906 * 114.09436 * 298.88493 * 24 23 22 26 26 C 1.53090 * 109.41085 * 61.16225 * 25 24 23 27 27 C 1.53172 * 109.03497 * 56.97872 * 6 5 3 28 28 C 1.53096 * 109.16478 * 303.02331 * 27 6 5 29 29 O 1.42896 * 109.41422 * 57.60885 * 28 27 6 30 30 H 1.08999 * 109.47031 * 299.99140 * 1 2 3 31 31 H 1.08996 * 109.47699 * 59.99780 * 1 2 3 32 32 H 1.09005 * 109.47107 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46602 * 240.00864 * 2 1 3 34 34 H 1.08990 * 109.47486 * 120.00612 * 2 1 3 35 35 H 1.08997 * 109.52526 * 62.49843 * 5 3 2 36 36 H 1.09009 * 109.52143 * 302.31004 * 5 3 2 37 37 H 0.97006 * 120.00109 * 0.02562 * 10 8 6 38 38 H 1.09000 * 109.46776 * 296.46740 * 11 10 8 39 39 H 1.09003 * 109.46815 * 56.46401 * 11 10 8 40 40 H 0.97002 * 120.00178 * 121.59580 * 13 12 11 41 41 H 0.96996 * 120.00403 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.52182 * 303.05053 * 22 12 11 43 43 H 1.08994 * 109.52447 * 63.24676 * 22 12 11 44 44 H 1.08993 * 109.40733 * 297.48755 * 23 22 12 45 45 H 1.09000 * 109.48043 * 177.50278 * 23 22 12 46 46 H 1.08992 * 109.48003 * 301.17645 * 25 24 23 47 47 H 1.09001 * 109.48451 * 181.15151 * 25 24 23 48 48 H 1.09003 * 109.51971 * 182.48178 * 26 25 24 49 49 H 1.08997 * 109.57748 * 62.33067 * 26 25 24 50 50 H 1.09006 * 109.52250 * 62.92523 * 27 6 5 51 51 H 1.09005 * 109.52463 * 183.11406 * 27 6 5 52 52 H 1.08995 * 109.47837 * 177.59524 * 28 27 6 53 53 H 1.08999 * 109.47809 * 297.62603 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6057 1.9816 -0.8419 5 6 3.5657 1.4449 -0.1246 6 6 4.0730 2.8890 -0.0633 7 1 5.1625 2.8958 -0.0959 8 6 3.5288 3.6645 -1.2353 9 8 2.8125 3.1157 -2.0456 10 7 3.8379 4.9680 -1.3827 11 6 3.3040 5.7236 -2.5186 12 6 3.7312 7.1881 -2.4030 13 7 3.3164 7.7184 -1.1019 14 6 1.9940 7.7037 -0.7465 15 1 1.2455 7.4008 -1.4636 16 6 1.6157 8.0781 0.5354 17 7 0.3446 8.0645 0.8769 18 14 2.9104 8.6014 1.7762 19 1 3.1250 10.0676 1.6792 20 1 2.4510 8.2578 3.1458 21 1 4.1846 7.8947 1.4896 22 6 3.0745 8.0032 -3.5214 23 6 3.5708 9.4497 -3.4468 24 8 4.9963 9.4703 -3.5458 25 6 5.6642 8.7642 -2.4982 26 6 5.2537 7.2899 -2.5361 27 6 3.5954 3.5313 1.2426 28 6 2.0683 3.4484 1.3144 29 8 1.6620 2.0816 1.2211 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 3.8543 0.9975 -1.0757 36 1 3.9990 0.8716 0.6951 37 1 4.4110 5.4069 -0.7346 38 1 3.6906 5.3045 -3.4476 39 1 2.2157 5.6613 -2.5171 40 1 3.9785 8.0800 -0.4921 41 1 0.0802 8.3265 1.7726 42 1 3.3424 7.5770 -4.4882 43 1 1.9915 7.9816 -3.4002 44 1 3.2660 9.8886 -2.4968 45 1 3.1411 10.0243 -4.2673 46 1 5.3868 9.1942 -1.5358 47 1 6.7425 8.8451 -2.6352 48 1 5.7278 6.7585 -1.7108 49 1 5.5671 6.8477 -3.4818 50 1 4.0292 3.0001 2.0898 51 1 3.9051 4.5761 1.2692 52 1 1.7258 3.8657 2.2612 53 1 1.6345 4.0137 0.4896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716909021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:17 Heat of formation + Delta-G solvation = -152.001077 kcal Electronic energy + Delta-G solvation = -32981.513806 eV Core-core repulsion = 28851.960286 eV Total energy + Delta-G solvation = -4129.553520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.74742 -40.77627 -39.25312 -37.38086 -35.38039 -34.87410 -34.61387 -33.79812 -32.03187 -31.65085 -30.74136 -28.60924 -26.59044 -25.67164 -24.70429 -24.46455 -23.75554 -22.67385 -22.08217 -20.67227 -19.95784 -19.79701 -17.83702 -17.40146 -17.36608 -17.04814 -17.02166 -16.75697 -16.37762 -16.24156 -15.96486 -15.62325 -15.34979 -15.02854 -14.80511 -14.68135 -14.57701 -14.30431 -14.21566 -14.12731 -13.83328 -13.32010 -13.24591 -13.14453 -12.96304 -12.91324 -12.76336 -12.68939 -12.55021 -12.21303 -12.13468 -12.08694 -11.85826 -11.73185 -11.64737 -11.57830 -11.34902 -11.18653 -10.95775 -10.73856 -10.40120 -10.21786 -9.90276 -9.30622 -7.94954 -5.30812 1.35564 1.41015 1.49165 1.68833 2.34113 2.51159 2.83188 3.02892 3.35241 3.45052 3.57123 3.70337 3.78289 3.79754 3.89450 3.93240 4.06805 4.09801 4.17993 4.24764 4.27860 4.40822 4.42120 4.51231 4.55165 4.60730 4.66622 4.69084 4.73696 4.77088 4.83495 4.85233 4.89596 4.91723 4.98670 5.00737 5.04715 5.05205 5.08306 5.14434 5.17504 5.24084 5.26354 5.29590 5.41119 5.60090 5.84807 6.25685 6.29894 6.32613 6.65544 7.12590 7.34056 7.83222 8.04560 9.26223 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.004251 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.164012 B = 6584.583392 C = 7688.577887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.071 3.929 4 H 0.045 0.955 5 C -0.120 4.120 6 C -0.106 4.106 7 H 0.136 0.864 8 C 0.507 3.493 9 O -0.584 6.584 10 N -0.696 5.696 11 C 0.130 3.870 12 C 0.193 3.807 13 N -0.732 5.732 14 C -0.203 4.203 15 H 0.048 0.952 16 C -0.056 4.056 17 N -0.984 5.984 18 Si 0.938 3.062 19 H -0.289 1.289 20 H -0.306 1.306 21 H -0.234 1.234 22 C -0.152 4.152 23 C 0.076 3.924 24 O -0.394 6.394 25 C 0.060 3.940 26 C -0.146 4.146 27 C -0.136 4.136 28 C 0.061 3.939 29 O -0.390 6.390 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.405 0.595 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.367 0.633 41 H 0.252 0.748 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.039 0.961 45 H 0.098 0.902 46 H 0.041 0.959 47 H 0.119 0.881 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.108 0.892 51 H 0.079 0.921 52 H 0.091 0.909 53 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.863 -10.046 -2.609 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C 0.014 3.986 4 H 0.063 0.937 5 C -0.158 4.158 6 C -0.127 4.127 7 H 0.154 0.846 8 C 0.294 3.706 9 O -0.465 6.465 10 N -0.346 5.346 11 C 0.004 3.996 12 C 0.103 3.897 13 N -0.375 5.375 14 C -0.334 4.334 15 H 0.066 0.934 16 C -0.247 4.247 17 N -0.634 5.634 18 Si 0.766 3.234 19 H -0.216 1.216 20 H -0.234 1.234 21 H -0.158 1.158 22 C -0.192 4.192 23 C -0.001 4.001 24 O -0.313 6.313 25 C -0.017 4.017 26 C -0.184 4.184 27 C -0.174 4.174 28 C -0.016 4.016 29 O -0.310 6.310 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.242 0.758 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.201 0.799 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.116 0.884 46 H 0.059 0.941 47 H 0.136 0.864 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.126 0.874 51 H 0.097 0.903 52 H 0.110 0.890 53 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 14.154 -10.462 -3.210 17.891 hybrid contribution -0.444 1.131 1.218 1.721 sum 13.710 -9.330 -1.992 16.703 Atomic orbital electron populations 1.21704 0.95973 1.02028 1.00956 1.21524 0.96257 0.93273 1.03444 1.22477 0.95016 0.94803 0.86297 0.93681 1.21959 0.95331 0.94516 1.03976 1.21492 1.03634 0.95613 0.91932 0.84615 1.21139 0.80056 0.82454 0.86928 1.90608 1.39136 1.70234 1.46506 1.45689 1.51004 1.09603 1.28319 1.21536 0.97162 0.92485 0.88409 1.19986 0.94079 0.89929 0.85700 1.42702 1.04407 1.73837 1.16600 1.18619 0.83846 1.35627 0.95276 0.93387 1.25348 0.97235 1.03014 0.99105 1.69893 1.16885 1.56652 1.20000 0.85683 0.80765 0.78283 0.78689 1.21577 1.23386 1.15760 1.22426 1.00546 0.97216 0.99023 1.22356 0.80564 0.95726 1.01472 1.87837 1.18805 1.74745 1.49951 1.22681 0.98112 0.90570 0.90323 1.22381 0.93299 0.98313 1.04409 1.22131 0.95379 1.02294 0.97586 1.22436 0.95346 0.82735 1.01066 1.87838 1.79546 1.24265 1.39366 0.93679 0.94347 0.90720 0.89343 0.90118 0.90023 0.88188 0.75831 0.91509 0.95693 0.79866 0.93877 0.90264 0.93065 0.94290 0.88396 0.94064 0.86353 0.89241 0.88858 0.87359 0.90253 0.89039 0.96842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.81 71.98 0.71 -3.07 16 2 C -0.11 -2.57 5.64 30.60 0.17 -2.40 16 3 C 0.07 2.14 2.35 30.62 0.07 2.21 16 4 H 0.05 1.73 5.82 -2.39 -0.01 1.72 16 5 C -0.12 -2.82 4.56 30.68 0.14 -2.68 16 6 C -0.11 -2.53 3.04 -11.42 -0.03 -2.57 16 7 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 8 C 0.51 16.33 5.82 87.66 0.51 16.84 16 9 O -0.58 -23.20 13.85 -3.03 -0.04 -23.25 16 10 N -0.70 -21.48 5.04 -463.06 -2.33 -23.81 16 11 C 0.13 4.45 4.31 86.38 0.37 4.82 16 12 C 0.19 6.09 0.41 3.72 0.00 6.09 16 13 N -0.73 -28.09 3.56 -302.83 -1.08 -29.17 16 14 C -0.20 -10.24 9.18 84.03 0.77 -9.47 16 15 H 0.05 2.83 6.99 -2.91 -0.02 2.81 16 16 C -0.06 -3.03 5.50 84.86 0.47 -2.56 16 17 N -0.98 -60.69 13.97 21.65 0.30 -60.39 16 18 Si 0.94 41.23 27.67 68.60 1.90 43.13 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.31 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.23 -8.47 6.62 99.48 0.66 -7.81 16 22 C -0.15 -4.89 4.84 30.69 0.15 -4.75 16 23 C 0.08 2.33 6.68 72.02 0.48 2.81 16 24 O -0.39 -11.28 10.77 -148.98 -1.60 -12.88 16 25 C 0.06 1.41 6.67 72.01 0.48 1.89 16 26 C -0.15 -3.38 4.80 30.68 0.15 -3.24 16 27 C -0.14 -3.46 5.56 30.68 0.17 -3.29 16 28 C 0.06 2.10 6.62 72.01 0.48 2.58 16 29 O -0.39 -13.13 9.94 -148.98 -1.48 -14.62 16 30 H 0.04 1.27 7.82 -2.39 -0.02 1.25 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.86 8.02 -2.39 -0.02 1.84 16 36 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.41 11.01 6.70 -92.70 -0.62 10.39 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.02 1.09 7.51 -2.39 -0.02 1.07 16 40 H 0.37 13.37 4.63 -92.71 -0.43 12.94 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.96 7.16 -2.39 -0.02 1.94 16 44 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 45 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 46 H 0.04 1.07 7.07 -2.39 -0.02 1.05 16 47 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.09 1.75 7.22 -2.39 -0.02 1.73 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.11 2.16 8.14 -2.38 -0.02 2.15 16 51 H 0.08 2.03 7.50 -2.38 -0.02 2.01 16 52 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 53 H 0.01 0.57 7.38 -2.39 -0.02 0.56 16 Total: -1.00 -70.59 397.15 0.55 -70.05 By element: Atomic # 1 Polarization: 47.89 SS G_CDS: -0.20 Total: 47.69 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.08 Total: 3.24 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -3.11 Total: -113.36 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -3.13 Total: -50.74 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.90 Total: 43.13 kcal Total: -70.59 0.55 -70.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716909021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.955 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds