Wall clock time and date at job start Sat Apr 11 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00341 * 2 1 4 4 C 1.52994 * 109.47353 * 240.00369 * 3 2 1 5 5 O 1.42902 * 109.46561 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47339 * 119.99823 * 3 2 1 7 7 C 1.50696 * 109.47482 * 180.02562 * 6 3 2 8 8 O 1.21287 * 119.99502 * 0.02562 * 7 6 3 9 9 N 1.34776 * 120.00237 * 180.02562 * 7 6 3 10 10 C 1.46924 * 120.62934 * 359.72346 * 9 7 6 11 11 C 1.52758 * 109.00660 * 233.58233 * 10 9 7 12 12 C 1.53043 * 109.38321 * 305.58643 * 11 10 9 13 13 N 1.46501 * 109.44652 * 181.25721 * 12 11 10 14 14 C 1.36939 * 119.99649 * 304.71064 * 13 12 11 15 15 H 1.07997 * 120.00296 * 321.83220 * 14 13 12 16 16 C 1.38814 * 119.99808 * 141.83811 * 14 13 12 17 17 N 1.31618 * 120.00497 * 157.03529 * 16 14 13 18 18 Si 1.86806 * 119.99885 * 337.03466 * 16 14 13 19 19 H 1.48499 * 109.47436 * 95.44978 * 18 16 14 20 20 H 1.48494 * 109.47142 * 215.45434 * 18 16 14 21 21 H 1.48502 * 109.46947 * 335.45398 * 18 16 14 22 22 C 1.46501 * 120.00164 * 124.71939 * 13 12 11 23 23 C 1.52996 * 109.47126 * 89.99431 * 22 13 12 24 24 O 1.42898 * 109.47321 * 65.00540 * 23 22 13 25 25 C 1.42896 * 113.99976 * 179.97438 * 24 23 22 26 26 C 1.53034 * 109.53605 * 61.24237 * 12 11 10 27 27 C 1.46925 * 120.63067 * 180.02562 * 9 7 6 28 28 H 1.08003 * 119.99759 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00108 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00175 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47157 * 59.99953 * 4 3 2 32 32 H 1.09000 * 109.47306 * 299.99478 * 4 3 2 33 33 H 1.09001 * 109.46860 * 179.97438 * 4 3 2 34 34 H 0.96705 * 114.00597 * 60.00050 * 5 3 2 35 35 H 1.09000 * 109.47111 * 300.01033 * 6 3 2 36 36 H 1.09000 * 109.46974 * 60.00227 * 6 3 2 37 37 H 1.09005 * 109.58906 * 353.41829 * 10 9 7 38 38 H 1.09001 * 109.58370 * 113.84214 * 10 9 7 39 39 H 1.09003 * 109.56228 * 185.55139 * 11 10 9 40 40 H 1.08997 * 109.38570 * 65.51578 * 11 10 9 41 41 H 1.08998 * 109.45893 * 301.21874 * 12 11 10 42 42 H 0.97002 * 120.00323 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.46966 * 209.99599 * 22 13 12 44 44 H 1.09001 * 109.46414 * 329.99154 * 22 13 12 45 45 H 1.09004 * 109.46739 * 185.00383 * 23 22 13 46 46 H 1.08997 * 109.47655 * 304.99613 * 23 22 13 47 47 H 1.09001 * 109.47242 * 299.99386 * 25 24 23 48 48 H 1.09002 * 109.47271 * 59.99846 * 25 24 23 49 49 H 1.09005 * 109.47032 * 179.97438 * 25 24 23 50 50 H 1.08999 * 109.50105 * 178.67891 * 26 12 11 51 51 H 1.09000 * 109.52532 * 58.60134 * 26 12 11 52 52 H 1.09004 * 109.58420 * 246.15813 * 27 9 7 53 53 H 1.09005 * 109.58695 * 6.43707 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6963 2.6914 1.2496 8 8 3.5440 3.4795 0.3403 9 7 4.5389 2.9830 2.2602 10 6 4.7292 2.0411 3.3716 11 6 4.4805 2.7709 4.6903 12 6 5.3716 4.0132 4.7593 13 7 5.1562 4.6977 6.0365 14 6 3.8935 5.0793 6.4042 15 1 3.2074 5.4615 5.6629 16 6 3.4954 4.9750 7.7300 17 7 2.5101 5.7215 8.1820 18 14 4.3582 3.7752 8.8726 19 1 5.4206 4.4872 9.6274 20 1 3.3730 3.2031 9.8251 21 1 4.9670 2.6815 8.0737 22 6 6.2915 4.9741 6.9202 23 6 6.8823 6.3434 6.5783 24 8 5.9223 7.3618 6.8666 25 6 6.3768 8.6864 6.5820 26 6 5.0211 4.9589 3.6084 27 6 5.2797 4.2518 2.2748 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 2.3164 1.3285 -2.1392 32 1 3.6515 0.5577 -1.2493 33 1 3.4878 2.3303 -1.2494 34 1 0.5438 2.4030 0.7659 35 1 2.3165 1.3283 2.1392 36 1 3.6515 0.5576 1.2492 37 1 4.0254 1.2144 3.2746 38 1 5.7498 1.6586 3.3556 39 1 4.7146 2.1085 5.5238 40 1 3.4340 3.0702 4.7464 41 1 6.4170 3.7151 4.6789 42 1 2.2321 5.6488 9.1085 43 1 5.9541 4.9725 7.9566 44 1 7.0527 4.2058 6.7846 45 1 7.7797 6.5109 7.1740 46 1 7.1382 6.3746 5.5193 47 1 7.2634 8.9022 7.1780 48 1 6.6224 8.7665 5.5230 49 1 5.5908 9.4008 6.8273 50 1 5.6398 5.8541 3.6717 51 1 3.9695 5.2383 3.6738 52 1 6.3462 4.0535 2.1674 53 1 4.9407 4.8823 1.4527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733279347.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:36 Heat of formation + Delta-G solvation = -72.862693 kcal Electronic energy + Delta-G solvation = -31896.565165 eV Core-core repulsion = 27770.443343 eV Total energy + Delta-G solvation = -4126.121822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.32626 -38.56746 -37.52775 -36.77580 -35.05587 -33.11031 -32.17435 -31.56232 -31.03196 -30.58567 -28.54943 -27.80948 -25.68476 -24.93362 -23.36358 -22.94226 -22.44181 -21.15690 -19.97484 -19.73376 -18.70166 -17.30486 -16.76489 -16.39795 -15.92020 -15.83317 -15.48956 -15.37022 -14.92048 -14.73135 -14.64032 -14.32463 -14.08729 -13.71859 -13.53261 -13.26348 -13.01570 -12.83906 -12.58929 -12.38220 -12.25461 -12.21975 -11.91086 -11.85328 -11.70504 -11.61325 -11.53182 -11.35271 -11.15818 -10.80032 -10.70517 -10.66286 -10.55206 -10.30441 -10.18544 -9.92185 -9.69285 -9.63267 -9.44719 -9.31214 -8.86764 -8.43931 -8.30784 -6.77004 -5.87221 -3.28159 2.00013 2.82355 3.18845 3.34980 3.48206 3.51012 4.16506 4.46331 4.55455 4.61205 4.62625 4.81947 4.87809 4.91696 5.04765 5.11928 5.35149 5.39166 5.46354 5.46802 5.56252 5.60136 5.65119 5.69067 5.73017 5.76738 5.79342 5.85883 5.91721 5.94630 5.96755 6.04549 6.12759 6.14280 6.15477 6.18520 6.26830 6.28733 6.36655 6.47550 6.52582 6.57000 6.73800 6.82688 7.00694 7.03557 7.62760 7.65420 7.97570 8.16668 8.41246 8.50258 9.05624 9.82730 10.19032 11.28890 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.003116 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.946779 B = 8984.809375 C = 9823.722288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 C 0.177 3.823 4 C -0.146 4.146 5 O -0.538 6.538 6 C -0.165 4.165 7 C 0.516 3.484 8 O -0.527 6.527 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.140 4.140 12 C 0.181 3.819 13 N -0.593 5.593 14 C -0.246 4.246 15 H 0.074 0.926 16 C 0.045 3.955 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.288 1.288 20 H -0.305 1.305 21 H -0.271 1.271 22 C 0.135 3.865 23 C 0.047 3.953 24 O -0.346 6.346 25 C 0.032 3.968 26 C -0.139 4.139 27 C 0.115 3.885 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.370 0.630 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.259 0.741 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.026 0.974 46 H 0.036 0.964 47 H 0.025 0.975 48 H 0.029 0.971 49 H 0.078 0.922 50 H 0.066 0.934 51 H 0.072 0.928 52 H 0.058 0.942 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.449 -10.188 -12.124 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C 0.135 3.865 4 C -0.203 4.203 5 O -0.343 6.343 6 C -0.205 4.205 7 C 0.304 3.696 8 O -0.404 6.404 9 N -0.342 5.342 10 C -0.015 4.015 11 C -0.179 4.179 12 C 0.073 3.927 13 N -0.314 5.314 14 C -0.374 4.374 15 H 0.092 0.908 16 C -0.155 4.155 17 N -0.538 5.538 18 Si 0.700 3.300 19 H -0.217 1.217 20 H -0.233 1.233 21 H -0.196 1.196 22 C 0.009 3.991 23 C -0.033 4.033 24 O -0.263 6.263 25 C -0.066 4.066 26 C -0.179 4.179 27 C -0.008 4.008 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.217 0.783 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.090 0.910 52 H 0.076 0.924 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.371 -9.624 -12.947 17.003 hybrid contribution 0.490 -0.760 1.529 1.777 sum 5.861 -10.384 -11.417 16.509 Atomic orbital electron populations 1.23878 0.96067 1.02407 0.99407 1.23620 0.96768 0.98794 1.01387 1.19843 0.88056 0.84025 0.94531 1.21923 0.98826 1.04213 0.95310 1.86709 1.50093 1.48839 1.48696 1.22414 1.00407 0.97129 1.00587 1.20326 0.79153 0.88310 0.81808 1.90650 1.64140 1.50100 1.35460 1.48166 1.43811 1.19910 1.22272 1.21760 1.01089 0.91770 0.86923 1.22229 1.03295 0.98033 0.94384 1.20312 0.95644 0.90212 0.86492 1.44104 1.03737 1.65523 1.18063 1.18447 0.88817 1.36258 0.93901 0.90818 1.25341 0.95645 0.97477 0.97066 1.69892 1.30761 1.37923 1.15177 0.87060 0.78388 0.83553 0.81044 1.21662 1.23292 1.19616 1.21339 0.90049 0.91543 0.96210 1.23275 0.90774 0.91442 0.97771 1.88308 1.39080 1.12937 1.86012 1.22639 0.99098 0.86653 0.98176 1.22345 1.03422 0.98851 0.93246 1.21628 0.94823 0.84769 0.99584 0.87638 0.88299 0.86768 0.92374 0.92093 0.88717 0.78257 0.88536 0.88332 0.90517 0.91918 0.91213 0.90267 0.93302 0.93072 0.91980 0.92966 0.95610 0.94581 0.95652 0.95263 0.90351 0.91581 0.90954 0.92402 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 13.93 29.01 0.40 -1.14 16 2 C -0.19 -1.69 8.77 -36.02 -0.32 -2.00 16 3 C 0.18 1.97 0.94 -91.77 -0.09 1.88 16 4 C -0.15 -1.68 8.50 37.15 0.32 -1.37 16 5 O -0.54 -7.08 10.84 -53.51 -0.58 -7.66 16 6 C -0.17 -1.77 3.28 -27.89 -0.09 -1.86 16 7 C 0.52 7.39 7.26 -10.99 -0.08 7.31 16 8 O -0.53 -9.25 12.37 -12.73 -0.16 -9.41 16 9 N -0.61 -8.47 2.98 -173.06 -0.52 -8.98 16 10 C 0.11 1.33 6.31 -3.94 -0.02 1.30 16 11 C -0.14 -2.27 5.21 -26.83 -0.14 -2.41 16 12 C 0.18 3.18 2.60 -67.89 -0.18 3.01 16 13 N -0.59 -12.92 1.98 -165.62 -0.33 -13.25 16 14 C -0.25 -6.47 8.05 -15.06 -0.12 -6.59 16 15 H 0.07 2.17 7.24 -52.49 -0.38 1.79 16 16 C 0.04 1.26 5.29 -17.43 -0.09 1.16 16 17 N -0.90 -27.14 13.97 55.49 0.78 -26.37 16 18 Si 0.87 21.51 25.12 -169.99 -4.27 17.24 16 19 H -0.29 -7.11 6.67 56.52 0.38 -6.74 16 20 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.13 2.76 4.93 -4.04 -0.02 2.74 16 23 C 0.05 0.88 6.28 37.16 0.23 1.12 16 24 O -0.35 -7.58 10.18 -35.23 -0.36 -7.94 16 25 C 0.03 0.53 11.01 101.05 1.11 1.65 16 26 C -0.14 -2.38 5.37 -26.64 -0.14 -2.52 16 27 C 0.11 1.68 6.43 -3.73 -0.02 1.66 16 28 H 0.11 0.92 6.41 -52.48 -0.34 0.59 16 29 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 30 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.35 5.51 -51.93 -0.29 1.06 16 34 H 0.37 3.83 8.05 45.56 0.37 4.20 16 35 H 0.10 0.96 7.68 -51.93 -0.40 0.57 16 36 H 0.10 0.83 7.95 -51.93 -0.41 0.42 16 37 H 0.08 0.78 5.94 -51.93 -0.31 0.47 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.51 7.61 -51.93 -0.40 1.11 16 41 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.06 1.45 3.40 -51.93 -0.18 1.27 16 44 H 0.05 0.91 7.88 -51.93 -0.41 0.50 16 45 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.07 1.48 7.24 -51.93 -0.38 1.10 16 52 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 53 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 LS Contribution 406.17 15.07 6.12 6.12 Total: -1.00 -33.49 406.17 -7.10 -40.59 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.54 Total: 5.74 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 0.75 Total: 3.93 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.07 Total: -48.60 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.10 Total: -25.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.27 Total: 17.24 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.49 -7.10 -40.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733279347.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.278 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds