Wall clock time and date at job start Sat Apr 11 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00341 * 2 1 4 4 C 1.52994 * 109.47353 * 240.00369 * 3 2 1 5 5 O 1.42902 * 109.46561 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47339 * 119.99823 * 3 2 1 7 7 C 1.50696 * 109.47482 * 180.02562 * 6 3 2 8 8 O 1.21287 * 119.99502 * 0.02562 * 7 6 3 9 9 N 1.34776 * 120.00237 * 180.02562 * 7 6 3 10 10 C 1.46924 * 120.62934 * 359.72346 * 9 7 6 11 11 C 1.52758 * 109.00660 * 233.58233 * 10 9 7 12 12 C 1.53043 * 109.38321 * 305.58643 * 11 10 9 13 13 N 1.46501 * 109.44652 * 181.25721 * 12 11 10 14 14 C 1.36939 * 119.99649 * 304.71064 * 13 12 11 15 15 H 1.07997 * 120.00296 * 321.83220 * 14 13 12 16 16 C 1.38814 * 119.99808 * 141.83811 * 14 13 12 17 17 N 1.31618 * 120.00497 * 157.03529 * 16 14 13 18 18 Si 1.86806 * 119.99885 * 337.03466 * 16 14 13 19 19 H 1.48499 * 109.47436 * 95.44978 * 18 16 14 20 20 H 1.48494 * 109.47142 * 215.45434 * 18 16 14 21 21 H 1.48502 * 109.46947 * 335.45398 * 18 16 14 22 22 C 1.46501 * 120.00164 * 124.71939 * 13 12 11 23 23 C 1.52996 * 109.47126 * 89.99431 * 22 13 12 24 24 O 1.42898 * 109.47321 * 65.00540 * 23 22 13 25 25 C 1.42896 * 113.99976 * 179.97438 * 24 23 22 26 26 C 1.53034 * 109.53605 * 61.24237 * 12 11 10 27 27 C 1.46925 * 120.63067 * 180.02562 * 9 7 6 28 28 H 1.08003 * 119.99759 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00108 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00175 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47157 * 59.99953 * 4 3 2 32 32 H 1.09000 * 109.47306 * 299.99478 * 4 3 2 33 33 H 1.09001 * 109.46860 * 179.97438 * 4 3 2 34 34 H 0.96705 * 114.00597 * 60.00050 * 5 3 2 35 35 H 1.09000 * 109.47111 * 300.01033 * 6 3 2 36 36 H 1.09000 * 109.46974 * 60.00227 * 6 3 2 37 37 H 1.09005 * 109.58906 * 353.41829 * 10 9 7 38 38 H 1.09001 * 109.58370 * 113.84214 * 10 9 7 39 39 H 1.09003 * 109.56228 * 185.55139 * 11 10 9 40 40 H 1.08997 * 109.38570 * 65.51578 * 11 10 9 41 41 H 1.08998 * 109.45893 * 301.21874 * 12 11 10 42 42 H 0.97002 * 120.00323 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.46966 * 209.99599 * 22 13 12 44 44 H 1.09001 * 109.46414 * 329.99154 * 22 13 12 45 45 H 1.09004 * 109.46739 * 185.00383 * 23 22 13 46 46 H 1.08997 * 109.47655 * 304.99613 * 23 22 13 47 47 H 1.09001 * 109.47242 * 299.99386 * 25 24 23 48 48 H 1.09002 * 109.47271 * 59.99846 * 25 24 23 49 49 H 1.09005 * 109.47032 * 179.97438 * 25 24 23 50 50 H 1.08999 * 109.50105 * 178.67891 * 26 12 11 51 51 H 1.09000 * 109.52532 * 58.60134 * 26 12 11 52 52 H 1.09004 * 109.58420 * 246.15813 * 27 9 7 53 53 H 1.09005 * 109.58695 * 6.43707 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6963 2.6914 1.2496 8 8 3.5440 3.4795 0.3403 9 7 4.5389 2.9830 2.2602 10 6 4.7292 2.0411 3.3716 11 6 4.4805 2.7709 4.6903 12 6 5.3716 4.0132 4.7593 13 7 5.1562 4.6977 6.0365 14 6 3.8935 5.0793 6.4042 15 1 3.2074 5.4615 5.6629 16 6 3.4954 4.9750 7.7300 17 7 2.5101 5.7215 8.1820 18 14 4.3582 3.7752 8.8726 19 1 5.4206 4.4872 9.6274 20 1 3.3730 3.2031 9.8251 21 1 4.9670 2.6815 8.0737 22 6 6.2915 4.9741 6.9202 23 6 6.8823 6.3434 6.5783 24 8 5.9223 7.3618 6.8666 25 6 6.3768 8.6864 6.5820 26 6 5.0211 4.9589 3.6084 27 6 5.2797 4.2518 2.2748 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 2.3164 1.3285 -2.1392 32 1 3.6515 0.5577 -1.2493 33 1 3.4878 2.3303 -1.2494 34 1 0.5438 2.4030 0.7659 35 1 2.3165 1.3283 2.1392 36 1 3.6515 0.5576 1.2492 37 1 4.0254 1.2144 3.2746 38 1 5.7498 1.6586 3.3556 39 1 4.7146 2.1085 5.5238 40 1 3.4340 3.0702 4.7464 41 1 6.4170 3.7151 4.6789 42 1 2.2321 5.6488 9.1085 43 1 5.9541 4.9725 7.9566 44 1 7.0527 4.2058 6.7846 45 1 7.7797 6.5109 7.1740 46 1 7.1382 6.3746 5.5193 47 1 7.2634 8.9022 7.1780 48 1 6.6224 8.7665 5.5230 49 1 5.5908 9.4008 6.8273 50 1 5.6398 5.8541 3.6717 51 1 3.9695 5.2383 3.6738 52 1 6.3462 4.0535 2.1674 53 1 4.9407 4.8823 1.4527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733279347.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:34 Heat of formation + Delta-G solvation = -96.689732 kcal Electronic energy + Delta-G solvation = -31897.598383 eV Core-core repulsion = 27770.443343 eV Total energy + Delta-G solvation = -4127.155040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.40828 -39.73235 -38.86079 -38.11499 -36.56243 -34.02726 -33.81797 -32.92076 -32.32558 -31.64160 -30.02808 -28.88983 -27.16707 -26.44925 -24.74555 -24.17780 -23.52175 -22.60856 -21.39360 -20.55548 -19.92669 -18.47544 -18.10151 -17.75680 -17.41046 -17.03331 -16.76401 -16.54070 -16.38634 -15.97690 -15.84296 -15.64411 -15.55439 -14.95992 -14.85557 -14.60614 -14.40011 -14.14839 -13.92226 -13.68419 -13.38264 -13.30935 -13.17299 -13.06527 -12.96989 -12.90856 -12.56813 -12.45954 -12.42249 -12.29806 -12.17112 -12.06150 -11.95920 -11.79190 -11.63277 -11.31089 -11.19407 -11.03359 -10.47940 -10.47079 -10.32705 -10.29352 -9.51115 -8.61145 -8.01798 -5.38203 1.33569 1.37967 1.45855 1.56703 1.74339 2.14242 2.55614 3.10884 3.17019 3.33555 3.48144 3.60234 3.78631 3.95449 4.07005 4.09410 4.18199 4.28187 4.35991 4.36913 4.42258 4.43829 4.48015 4.55768 4.58933 4.60703 4.66968 4.68880 4.71986 4.73880 4.82007 4.85740 4.87547 4.89225 4.91171 4.97707 5.10395 5.10915 5.16325 5.24122 5.39698 5.49794 5.61855 5.67086 5.71958 5.84848 6.10213 6.34488 6.54744 6.60551 6.83691 7.15896 7.32797 7.81554 8.19658 9.19402 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.003116 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.946779 B = 8984.809375 C = 9823.722288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.187 4.187 3 C 0.170 3.830 4 C -0.145 4.145 5 O -0.566 6.566 6 C -0.158 4.158 7 C 0.509 3.491 8 O -0.566 6.566 9 N -0.611 5.611 10 C 0.115 3.885 11 C -0.135 4.135 12 C 0.175 3.825 13 N -0.603 5.603 14 C -0.210 4.210 15 H 0.022 0.978 16 C -0.018 4.018 17 N -0.957 5.957 18 Si 0.937 3.063 19 H -0.287 1.287 20 H -0.320 1.320 21 H -0.241 1.241 22 C 0.124 3.876 23 C 0.046 3.954 24 O -0.399 6.399 25 C 0.030 3.970 26 C -0.126 4.126 27 C 0.123 3.877 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.377 0.623 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.254 0.746 43 H 0.034 0.966 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.060 0.940 51 H 0.022 0.978 52 H 0.090 0.910 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.699 -13.638 -12.728 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.205 4.205 3 C 0.129 3.871 4 C -0.201 4.201 5 O -0.373 6.373 6 C -0.198 4.198 7 C 0.298 3.702 8 O -0.446 6.446 9 N -0.344 5.344 10 C -0.008 4.008 11 C -0.174 4.174 12 C 0.069 3.931 13 N -0.324 5.324 14 C -0.340 4.340 15 H 0.039 0.961 16 C -0.213 4.213 17 N -0.602 5.602 18 Si 0.767 3.233 19 H -0.215 1.215 20 H -0.250 1.250 21 H -0.165 1.165 22 C -0.001 4.001 23 C -0.032 4.032 24 O -0.318 6.318 25 C -0.067 4.067 26 C -0.166 4.166 27 C 0.000 4.000 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.156 0.844 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.226 0.774 35 H 0.124 0.876 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.113 0.887 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.041 0.959 52 H 0.108 0.892 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.677 -13.110 -13.573 20.770 hybrid contribution -0.517 0.459 1.593 1.736 sum 8.159 -12.651 -11.980 19.239 Atomic orbital electron populations 1.24025 0.96235 1.02859 0.98860 1.23606 0.96769 0.98343 1.01811 1.20002 0.88003 0.84586 0.94492 1.21902 0.99091 1.03631 0.95519 1.86681 1.50833 1.50315 1.49445 1.22444 1.00677 0.95919 1.00710 1.21027 0.78718 0.89258 0.81169 1.90649 1.65169 1.51675 1.37074 1.48291 1.43624 1.19773 1.22737 1.21868 1.03974 0.91248 0.83666 1.22124 1.00363 0.97742 0.97209 1.20583 0.98077 0.90362 0.84081 1.44210 1.02471 1.66239 1.19527 1.18091 0.89994 1.33533 0.92414 0.96054 1.25927 0.97008 0.99377 0.98993 1.70060 1.34085 1.40721 1.15339 0.85959 0.76830 0.81703 0.78857 1.21455 1.24984 1.16476 1.21532 0.90318 0.94015 0.94229 1.23301 0.90925 0.89853 0.99154 1.88229 1.41568 1.15301 1.86706 1.22762 0.99886 0.84510 0.99538 1.22164 1.00063 0.99158 0.95207 1.21469 0.96631 0.85008 0.96882 0.88604 0.86530 0.84369 0.92962 0.89404 0.91746 0.77431 0.87635 0.84867 0.87746 0.88421 0.90867 0.94377 0.89485 0.93737 0.94816 0.88667 0.92659 0.93149 0.93030 0.93886 0.90940 0.92148 0.95887 0.89156 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 13.93 67.78 0.94 -1.84 16 2 C -0.19 -2.86 8.77 25.65 0.22 -2.64 16 3 C 0.17 3.52 0.94 -11.54 -0.01 3.51 16 4 C -0.14 -3.16 8.50 71.98 0.61 -2.55 16 5 O -0.57 -15.09 10.84 -131.50 -1.43 -16.51 16 6 C -0.16 -2.95 3.28 29.85 0.10 -2.85 16 7 C 0.51 13.93 7.26 87.66 0.64 14.56 16 8 O -0.57 -20.17 12.37 14.43 0.18 -19.99 16 9 N -0.61 -15.72 2.98 -819.81 -2.44 -18.16 16 10 C 0.11 2.35 6.31 86.22 0.54 2.90 16 11 C -0.13 -4.09 5.21 30.53 0.16 -3.93 16 12 C 0.17 5.79 2.60 45.02 0.12 5.91 16 13 N -0.60 -25.71 1.98 -677.90 -1.34 -27.05 16 14 C -0.21 -11.48 8.05 84.03 0.68 -10.80 16 15 H 0.02 1.38 7.24 -2.91 -0.02 1.36 16 16 C -0.02 -1.05 5.29 84.86 0.45 -0.60 16 17 N -0.96 -61.17 13.97 21.65 0.30 -60.87 16 18 Si 0.94 45.09 25.12 68.60 1.72 46.81 16 19 H -0.29 -13.56 6.67 99.48 0.66 -12.90 16 20 H -0.32 -16.06 7.11 99.48 0.71 -15.35 16 21 H -0.24 -10.28 7.11 99.48 0.71 -9.57 16 22 C 0.12 4.76 4.93 86.38 0.43 5.18 16 23 C 0.05 1.63 6.28 71.98 0.45 2.08 16 24 O -0.40 -17.44 10.18 -148.98 -1.52 -18.96 16 25 C 0.03 0.97 11.01 113.37 1.25 2.22 16 26 C -0.13 -4.32 5.37 30.65 0.16 -4.16 16 27 C 0.12 3.45 6.43 86.35 0.56 4.00 16 28 H 0.10 1.62 6.41 -2.91 -0.02 1.61 16 29 H 0.12 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.84 5.51 -2.39 -0.01 1.83 16 34 H 0.38 8.09 8.05 -74.05 -0.60 7.49 16 35 H 0.11 1.82 7.68 -2.39 -0.02 1.80 16 36 H 0.13 1.58 7.95 -2.39 -0.02 1.56 16 37 H 0.10 1.62 5.94 -2.38 -0.01 1.60 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.04 1.46 7.61 -2.39 -0.02 1.44 16 41 H 0.09 2.30 7.77 -2.39 -0.02 2.29 16 42 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.03 1.51 3.40 -2.39 -0.01 1.50 16 44 H 0.10 2.82 7.88 -2.39 -0.02 2.80 16 45 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 50 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.02 0.99 7.24 -2.39 -0.02 0.97 16 52 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.07 2.13 7.00 -2.38 -0.02 2.11 16 Total: -1.00 -80.33 406.17 3.02 -77.31 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.25 Total: 26.44 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 7.30 Total: 10.98 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.48 Total: -106.09 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -2.76 Total: -55.46 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.72 Total: 46.81 kcal Total: -80.33 3.02 -77.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733279347.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.379 kcal (2) G-P(sol) polarization free energy of solvation -80.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds