Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47138 * 2 1 4 4 H 1.08997 * 109.47185 * 55.00567 * 3 2 1 5 5 C 1.50696 * 109.47313 * 175.00385 * 3 2 1 6 6 H 1.07994 * 120.00449 * 119.99804 * 5 3 2 7 7 C 1.37885 * 120.00008 * 300.00449 * 5 3 2 8 8 N 1.31507 * 120.00025 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99742 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.46982 * 90.00356 * 9 7 5 11 11 H 1.48503 * 109.47002 * 210.00390 * 9 7 5 12 12 H 1.48492 * 109.47032 * 330.00344 * 9 7 5 13 13 N 1.46499 * 109.47391 * 295.00247 * 3 2 1 14 14 C 1.34777 * 120.00019 * 84.99948 * 13 3 2 15 15 O 1.21286 * 119.99820 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00236 * 179.97438 * 14 13 3 17 17 H 1.08991 * 110.05761 * 313.95411 * 16 14 13 18 18 C 1.54264 * 110.03515 * 192.52896 * 16 14 13 19 19 C 1.54887 * 104.19947 * 217.10948 * 18 16 14 20 20 C 1.54884 * 102.74853 * 37.94268 * 19 18 16 21 21 C 1.53882 * 110.02889 * 75.36875 * 16 14 13 22 22 H 1.09005 * 110.06822 * 238.59096 * 21 16 14 23 23 N 1.46497 * 110.03187 * 359.97438 * 21 16 14 24 24 C 1.34777 * 120.00158 * 251.82267 * 23 21 16 25 25 O 1.21518 * 119.99708 * 0.02562 * 24 23 21 26 26 O 1.34632 * 120.00234 * 180.02562 * 24 23 21 27 27 C 1.45206 * 117.00263 * 179.97438 * 26 24 23 28 28 C 1.52994 * 109.46950 * 59.99827 * 27 26 24 29 29 C 1.53002 * 109.47012 * 179.97438 * 27 26 24 30 30 C 1.52997 * 109.46804 * 299.99847 * 27 26 24 31 31 H 1.08998 * 109.47092 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46679 * 299.99571 * 1 2 3 33 33 H 1.08991 * 109.47599 * 59.99544 * 1 2 3 34 34 H 1.09005 * 109.46789 * 239.99903 * 2 1 3 35 35 H 1.09001 * 109.47483 * 120.00568 * 2 1 3 36 36 H 0.97007 * 120.00323 * 179.97438 * 8 7 5 37 37 H 0.97000 * 120.00412 * 265.00409 * 13 3 2 38 38 H 1.08997 * 110.48403 * 98.42694 * 18 16 14 39 39 H 1.08999 * 110.60021 * 335.84496 * 18 16 14 40 40 H 1.09004 * 110.75372 * 279.62653 * 19 18 16 41 41 H 1.09000 * 110.91277 * 156.33398 * 19 18 16 42 42 H 1.08997 * 110.48644 * 203.38351 * 20 19 18 43 43 H 1.08994 * 110.48667 * 80.73806 * 20 19 18 44 44 H 0.96996 * 120.00011 * 71.82651 * 23 21 16 45 45 H 1.09002 * 109.47722 * 60.00233 * 28 27 26 46 46 H 1.09007 * 109.47334 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.47313 * 300.00278 * 28 27 26 48 48 H 1.08990 * 109.47228 * 59.99820 * 29 27 26 49 49 H 1.09007 * 109.46747 * 180.02562 * 29 27 26 50 50 H 1.09002 * 109.47053 * 299.99396 * 29 27 26 51 51 H 1.08999 * 109.47441 * 60.00200 * 30 27 26 52 52 H 1.09001 * 109.46902 * 179.97438 * 30 27 26 53 53 H 1.09002 * 109.47364 * 299.99709 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1471 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 5.4540 0.8803 1.3361 9 14 3.0964 0.1098 2.5706 10 1 2.8746 -1.3262 2.2644 11 1 3.7943 0.2357 3.8754 12 1 1.7883 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3396 2.6319 -0.4342 16 6 0.0366 3.3388 -2.6543 17 1 0.8437 3.9820 -3.0048 18 6 -1.2461 4.1689 -2.4411 19 6 -2.0389 3.9885 -3.7594 20 6 -1.7697 2.5064 -4.1200 21 6 -0.2964 2.2817 -3.7218 22 1 0.3491 2.4112 -4.5906 23 7 -0.1256 0.9368 -3.1667 24 6 0.9126 0.1724 -3.5595 25 8 1.7073 0.5991 -4.3739 26 8 1.0693 -1.0638 -3.0498 27 6 2.2096 -1.8307 -3.5189 28 6 3.5007 -1.0812 -3.1842 29 6 2.2216 -3.1981 -2.8327 30 6 2.1081 -2.0205 -5.0337 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8898 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 5.8772 0.4824 2.1130 37 1 2.2718 2.1232 -1.9978 38 1 -0.9993 5.2190 -2.2849 39 1 -1.8170 3.7826 -1.5967 40 1 -1.6544 4.6508 -4.5350 41 1 -3.1034 4.1601 -3.5998 42 1 -1.9050 2.3434 -5.1892 43 1 -2.4242 1.8495 -3.5471 44 1 -0.7597 0.5964 -2.5164 45 1 3.5731 -0.9460 -2.1050 46 1 4.3568 -1.6567 -3.5367 47 1 3.4924 -0.1068 -3.6726 48 1 1.3019 -3.7322 -3.0707 49 1 3.0779 -3.7736 -3.1845 50 1 2.2942 -3.0625 -1.7536 51 1 2.0998 -1.0461 -5.5222 52 1 2.9643 -2.5958 -5.3859 53 1 1.1882 -2.5544 -5.2722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183795553.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -145.564630 kcal Electronic energy + Delta-G solvation = -34250.419342 eV Core-core repulsion = 30121.144927 eV Total energy + Delta-G solvation = -4129.274415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10648 -41.01872 -39.03329 -37.70120 -36.89413 -35.31214 -34.45324 -34.14215 -33.25488 -30.32184 -29.16900 -28.63407 -28.27456 -28.25129 -24.77387 -23.87802 -23.05478 -21.96616 -21.49060 -20.96456 -20.62315 -19.24939 -19.04286 -18.00081 -17.63376 -17.26206 -17.07121 -16.57831 -16.55171 -15.97798 -15.67713 -15.42381 -15.27625 -14.99570 -14.85201 -14.45994 -14.31966 -14.14231 -13.78548 -13.70254 -13.34137 -13.26196 -13.10378 -12.99156 -12.83496 -12.78990 -12.75854 -12.71407 -12.46384 -12.34424 -12.22309 -12.19816 -11.93792 -11.85224 -11.78948 -11.48788 -11.40875 -11.24058 -11.14595 -11.01106 -10.86660 -10.55710 -10.17278 -9.69787 -8.38311 -6.42578 1.22999 1.24558 1.30898 1.40707 1.80089 1.88398 2.23601 2.51675 2.97382 3.14961 3.52295 3.65541 3.82020 3.86580 3.88998 4.02163 4.24489 4.28058 4.35245 4.36815 4.44374 4.48834 4.50156 4.57800 4.63429 4.67396 4.73047 4.80231 4.83048 4.87231 4.92047 4.94748 5.00050 5.03560 5.08978 5.14183 5.16997 5.22679 5.25662 5.28345 5.35409 5.37572 5.42955 5.49237 5.53684 5.59086 5.67299 5.70753 6.14136 6.40817 6.58015 6.90370 7.19736 7.40516 7.47792 8.77057 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009352 B = 0.006323 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.162539 B = 4427.550146 C = 6366.749468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.132 4.132 3 C 0.254 3.746 4 H 0.018 0.982 5 C -0.526 4.526 6 H 0.046 0.954 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.935 3.065 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.698 5.698 14 C 0.516 3.484 15 O -0.577 6.577 16 C -0.130 4.130 17 H 0.108 0.892 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.123 4.123 21 C 0.165 3.835 22 H 0.112 0.888 23 N -0.704 5.704 24 C 0.655 3.345 25 O -0.587 6.587 26 O -0.365 6.365 27 C 0.132 3.868 28 C -0.178 4.178 29 C -0.138 4.138 30 C -0.171 4.171 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.269 0.731 37 H 0.394 0.606 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.406 0.594 45 H 0.042 0.958 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.051 0.949 51 H 0.068 0.932 52 H 0.086 0.914 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.685 -2.534 -14.747 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.171 4.171 3 C 0.149 3.851 4 H 0.035 0.965 5 C -0.564 4.564 6 H 0.065 0.935 7 C -0.167 4.167 8 N -0.571 5.571 9 Si 0.763 3.237 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.187 1.187 13 N -0.345 5.345 14 C 0.303 3.697 15 O -0.457 6.457 16 C -0.153 4.153 17 H 0.126 0.874 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.161 4.161 21 C 0.061 3.939 22 H 0.130 0.870 23 N -0.364 5.364 24 C 0.410 3.590 25 O -0.478 6.478 26 O -0.279 6.279 27 C 0.096 3.904 28 C -0.235 4.235 29 C -0.195 4.195 30 C -0.228 4.228 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.227 0.773 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.244 0.756 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.118 0.882 50 H 0.070 0.930 51 H 0.086 0.914 52 H 0.105 0.895 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.617 -2.496 -14.373 20.651 hybrid contribution 0.694 -0.374 1.224 1.456 sum -13.923 -2.870 -13.149 19.365 Atomic orbital electron populations 1.21831 0.95206 1.00344 1.01646 1.22173 0.95992 0.98186 1.00702 1.18722 0.92981 0.89723 0.83679 0.96467 1.21213 0.90458 1.38267 1.06506 0.93532 1.25486 0.95641 0.95884 0.99648 1.69983 1.10177 1.46225 1.30724 0.86059 0.79312 0.79906 0.78425 1.18732 1.22184 1.18660 1.46090 1.15900 1.56128 1.16408 1.20783 0.81158 0.77907 0.89850 1.90625 1.51947 1.61286 1.41887 1.22607 1.01723 0.98448 0.92502 0.87411 1.22324 0.93574 0.99260 0.99637 1.22432 1.01033 0.95135 0.96039 1.22704 0.92392 0.98124 1.02869 1.21818 0.99980 0.77261 0.94868 0.87006 1.45206 1.27866 1.16054 1.47295 1.18177 0.81449 0.80410 0.79008 1.90866 1.45004 1.74378 1.37592 1.86326 1.49723 1.26102 1.65753 1.22252 0.82194 0.90526 0.95431 1.22446 0.97271 1.02190 1.01597 1.21884 1.04342 0.92685 1.00591 1.22410 1.03476 1.03701 0.93227 0.92642 0.94689 0.91773 0.91142 0.94644 0.92223 0.77261 0.90522 0.91221 0.89348 0.89322 0.88644 0.90677 0.75629 0.93890 0.90073 0.91476 0.90238 0.88243 0.92961 0.91353 0.89504 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.51 71.98 0.61 -4.44 16 2 C -0.13 -5.80 5.11 30.59 0.16 -5.65 16 3 C 0.25 12.22 1.83 44.24 0.08 12.30 16 4 H 0.02 0.94 6.63 -2.39 -0.02 0.93 16 5 C -0.53 -29.46 9.31 25.60 0.24 -29.22 16 6 H 0.05 2.84 7.98 -2.91 -0.02 2.82 16 7 C 0.03 1.90 5.45 84.66 0.46 2.36 16 8 N -0.93 -56.74 13.96 21.45 0.30 -56.44 16 9 Si 0.94 45.90 24.41 68.60 1.67 47.57 16 10 H -0.26 -12.11 6.83 99.48 0.68 -11.43 16 11 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.26 -12.79 6.53 99.48 0.65 -12.14 16 13 N -0.70 -28.33 4.17 -446.11 -1.86 -30.19 16 14 C 0.52 18.41 4.50 87.66 0.39 18.80 16 15 O -0.58 -23.60 12.55 -3.05 -0.04 -23.64 16 16 C -0.13 -3.30 3.30 -10.81 -0.04 -3.34 16 17 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 18 C -0.11 -2.30 6.24 31.67 0.20 -2.10 16 19 C -0.11 -1.48 6.91 31.88 0.22 -1.26 16 20 C -0.12 -1.88 6.53 31.67 0.21 -1.67 16 21 C 0.16 3.63 3.51 45.72 0.16 3.79 16 22 H 0.11 2.51 7.05 -2.38 -0.02 2.50 16 23 N -0.70 -18.64 2.99 -566.65 -1.70 -20.33 16 24 C 0.66 20.21 7.28 129.79 0.95 21.15 16 25 O -0.59 -19.77 11.28 19.79 0.22 -19.55 16 26 O -0.36 -11.26 8.51 -55.41 -0.47 -11.73 16 27 C 0.13 3.69 1.13 -10.80 -0.01 3.68 16 28 C -0.18 -5.93 8.36 71.98 0.60 -5.32 16 29 C -0.14 -3.19 8.85 71.98 0.64 -2.55 16 30 C -0.17 -3.99 8.37 71.98 0.60 -3.38 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.42 7.85 -2.38 -0.02 1.41 16 33 H 0.06 2.26 2.85 -2.39 -0.01 2.25 16 34 H 0.07 3.04 5.60 -2.38 -0.01 3.03 16 35 H 0.04 1.65 3.22 -2.39 -0.01 1.64 16 36 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 37 H 0.39 16.00 8.36 -92.71 -0.77 15.23 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.80 6.77 -2.39 -0.02 1.78 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.18 7.96 -2.39 -0.02 1.16 16 44 H 0.41 10.84 6.34 -92.71 -0.59 10.26 16 45 H 0.04 1.72 7.08 -2.39 -0.02 1.70 16 46 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.07 2.48 5.88 -2.39 -0.01 2.47 16 48 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 50 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.07 1.88 5.88 -2.39 -0.01 1.87 16 52 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 53 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.84 389.00 3.09 -65.76 By element: Atomic # 1 Polarization: 45.93 SS G_CDS: -0.51 Total: 45.42 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.47 Total: 3.13 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.26 Total: -106.97 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -0.29 Total: -54.91 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.57 kcal Total: -68.84 3.09 -65.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183795553.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.807 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds