Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47073 * 2 1 4 4 H 1.08999 * 109.47407 * 305.38887 * 3 2 1 5 5 C 1.50701 * 109.46883 * 185.38778 * 3 2 1 6 6 H 1.08004 * 119.99898 * 244.81590 * 5 3 2 7 7 C 1.37870 * 120.00027 * 64.82212 * 5 3 2 8 8 N 1.31522 * 120.00288 * 7.03999 * 7 5 3 9 9 Si 1.86799 * 120.00054 * 187.04120 * 7 5 3 10 10 H 1.48498 * 109.47214 * 84.98960 * 9 7 5 11 11 H 1.48498 * 109.47221 * 204.99428 * 9 7 5 12 12 H 1.48504 * 109.47100 * 324.99155 * 9 7 5 13 13 N 1.46501 * 109.47142 * 65.38653 * 3 2 1 14 14 C 1.34777 * 120.00095 * 274.99681 * 13 3 2 15 15 O 1.21281 * 120.00216 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99788 * 179.97438 * 14 13 3 17 17 C 1.52998 * 110.63962 * 61.69116 * 16 14 13 18 18 C 1.55154 * 110.71726 * 185.02607 * 16 14 13 19 19 C 1.54909 * 101.58070 * 153.86972 * 18 16 14 20 20 N 1.47422 * 104.83129 * 322.98701 * 19 18 16 21 21 C 1.34781 * 125.65051 * 204.16269 * 20 19 18 22 22 O 1.21514 * 119.99823 * 179.97438 * 21 20 19 23 23 O 1.34635 * 119.99986 * 359.96213 * 21 20 19 24 24 C 1.45203 * 116.99914 * 179.97438 * 23 21 20 25 25 C 1.52992 * 109.47009 * 60.00094 * 24 23 21 26 26 C 1.52992 * 109.46819 * 180.02562 * 24 23 21 27 27 C 1.52996 * 109.47222 * 300.00216 * 24 23 21 28 28 C 1.47023 * 108.70314 * 24.13087 * 20 19 18 29 29 H 1.08992 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46785 * 300.00442 * 1 2 3 31 31 H 1.09004 * 109.47000 * 59.99477 * 1 2 3 32 32 H 1.09000 * 109.47090 * 120.00031 * 2 1 3 33 33 H 1.09002 * 109.46703 * 240.00326 * 2 1 3 34 34 H 0.96990 * 120.00177 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99640 * 94.99604 * 13 3 2 36 36 H 1.09006 * 109.47255 * 60.70099 * 17 16 14 37 37 H 1.08995 * 109.47145 * 180.69819 * 17 16 14 38 38 H 1.08999 * 109.47187 * 300.70029 * 17 16 14 39 39 H 1.09001 * 111.00779 * 271.94016 * 18 16 14 40 40 H 1.09004 * 111.00781 * 35.79717 * 18 16 14 41 41 H 1.09001 * 110.36825 * 204.15359 * 19 18 16 42 42 H 1.08997 * 110.37036 * 81.82610 * 19 18 16 43 43 H 1.09006 * 109.47521 * 59.99952 * 25 24 23 44 44 H 1.08997 * 109.47275 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.47583 * 299.99783 * 25 24 23 46 46 H 1.09004 * 109.47729 * 60.00389 * 26 24 23 47 47 H 1.09000 * 109.47467 * 180.02562 * 26 24 23 48 48 H 1.09005 * 109.47430 * 299.99719 * 26 24 23 49 49 H 1.09001 * 109.47181 * 59.99854 * 27 24 23 50 50 H 1.09002 * 109.47178 * 179.97438 * 27 24 23 51 51 H 1.09004 * 109.47150 * 300.00254 * 27 24 23 52 52 H 1.09000 * 109.88586 * 239.51945 * 28 20 19 53 53 H 1.09006 * 110.01170 * 118.42988 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6001 1.9835 -0.8378 5 6 3.5411 1.4446 -0.1334 6 1 4.1545 1.8166 0.6739 7 6 4.1314 0.9716 -1.2861 8 7 3.3872 0.6485 -2.3212 9 14 5.9883 0.7897 -1.3778 10 1 6.3860 -0.5216 -0.8054 11 1 6.4235 0.8635 -2.7956 12 1 6.6315 1.8826 -0.6050 13 7 1.6605 2.0947 1.2557 14 6 0.4439 2.6614 1.3799 15 8 -0.3367 2.6310 0.4522 16 6 0.0533 3.3317 2.6718 17 6 0.9846 4.5078 2.9722 18 6 -1.4262 3.7964 2.6236 19 6 -1.8023 3.7932 4.1264 20 7 -1.0972 2.6274 4.6894 21 6 -1.4544 1.9551 5.8016 22 8 -0.7963 1.0041 6.1744 23 8 -2.5403 2.3374 6.4997 24 6 -2.8658 1.5670 7.6867 25 6 -1.6985 1.6330 8.6734 26 6 -4.1214 2.1457 8.3418 27 6 -3.1207 0.1101 7.2951 28 6 0.0597 2.3189 3.8362 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.8025 0.3161 -3.1323 35 1 2.2847 2.1186 1.9978 36 1 0.9129 5.2423 2.1699 37 1 0.6932 4.9704 3.9152 38 1 2.0112 4.1489 3.0455 39 1 -1.5075 4.7986 2.2027 40 1 -2.0400 3.0891 2.0658 41 1 -2.8796 3.6798 4.2476 42 1 -1.4603 4.7108 4.6050 43 1 -1.5168 2.6710 8.9525 44 1 -1.9429 1.0551 9.5646 45 1 -0.8041 1.2205 8.2065 46 1 -4.9530 2.0983 7.6386 47 1 -4.3656 1.5677 9.2331 48 1 -3.9402 3.1838 8.6208 49 1 -2.2264 -0.3024 6.8280 50 1 -3.3646 -0.4683 8.1862 51 1 -3.9524 0.0631 6.5920 52 1 -0.0272 1.3049 3.4460 53 1 0.9822 2.4179 4.4085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183907337.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -147.517613 kcal Electronic energy + Delta-G solvation = -31749.014282 eV Core-core repulsion = 27619.655179 eV Total energy + Delta-G solvation = -4129.359102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07507 -41.22656 -39.30964 -37.66896 -36.83672 -35.21408 -34.38348 -33.79952 -32.60300 -30.60451 -28.85925 -28.35128 -28.27147 -27.98196 -25.55128 -24.89892 -23.28897 -22.62996 -21.52372 -20.56200 -20.38583 -19.20524 -18.39351 -17.82461 -17.52393 -17.24492 -17.13159 -16.52512 -16.27511 -15.97245 -15.60679 -15.33399 -15.09104 -14.80074 -14.66197 -14.61167 -14.15419 -13.92767 -13.69181 -13.39596 -13.32632 -13.28278 -13.24794 -13.13465 -12.96205 -12.90278 -12.88851 -12.84456 -12.66152 -12.60076 -12.43013 -12.25438 -12.19285 -12.14071 -11.96792 -11.76885 -11.62594 -11.38560 -11.12847 -11.07659 -10.58513 -10.48424 -9.85243 -9.62689 -8.18041 -6.31578 0.96735 1.44623 1.45800 1.54797 1.70737 1.82548 2.35544 2.58920 2.87078 3.13828 3.26605 3.48526 3.77078 3.78285 3.82093 3.96558 4.06601 4.14849 4.24789 4.42368 4.45192 4.51172 4.56061 4.60400 4.63149 4.68256 4.71462 4.72158 4.78170 4.83689 4.86461 4.90221 4.90251 5.00119 5.04865 5.08575 5.14159 5.18622 5.22467 5.29861 5.31963 5.36145 5.40038 5.45205 5.53017 5.62437 5.74882 5.91688 6.09257 6.35809 6.77353 6.98569 7.21358 7.34611 7.57241 8.90153 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.002598 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.152388 B =10776.671219 C =11050.689809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.279 3.721 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.702 5.702 14 C 0.515 3.485 15 O -0.578 6.578 16 C -0.085 4.085 17 C -0.131 4.131 18 C -0.105 4.105 19 C 0.109 3.891 20 N -0.603 5.603 21 C 0.663 3.337 22 O -0.593 6.593 23 O -0.361 6.361 24 C 0.123 3.877 25 C -0.179 4.179 26 C -0.133 4.133 27 C -0.182 4.182 28 C 0.146 3.854 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.102 0.898 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.092 0.908 51 H 0.059 0.941 52 H 0.050 0.950 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.402 7.371 22.259 26.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.154 4.154 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.350 5.350 14 C 0.301 3.699 15 O -0.459 6.459 16 C -0.089 4.089 17 C -0.188 4.188 18 C -0.143 4.143 19 C -0.012 4.012 20 N -0.344 5.344 21 C 0.419 3.581 22 O -0.484 6.484 23 O -0.276 6.276 24 C 0.087 3.913 25 C -0.236 4.236 26 C -0.190 4.190 27 C -0.239 4.239 28 C 0.023 3.977 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.111 0.889 51 H 0.078 0.922 52 H 0.068 0.932 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.804 6.927 21.665 26.102 hybrid contribution 1.330 -0.675 -0.578 1.599 sum -11.475 6.252 21.087 24.807 Atomic orbital electron populations 1.21665 0.96842 0.99110 1.00366 1.21721 0.93919 0.99412 1.00307 1.18347 0.93751 0.88870 0.81520 0.97635 1.21542 0.91432 1.43075 1.02374 0.90985 1.25740 1.02975 0.94791 0.94790 1.70111 1.37337 1.44162 1.03866 0.85467 0.79546 0.78939 0.77056 1.19886 1.21418 1.18704 1.46275 1.15524 1.55749 1.17436 1.20599 0.81732 0.78201 0.89366 1.90664 1.51927 1.60752 1.42531 1.21832 0.99510 0.96848 0.90681 1.21826 0.98129 0.95245 1.03585 1.22740 0.92116 1.03864 0.95578 1.22570 0.98215 0.88125 0.92280 1.47132 1.30206 1.33095 1.23952 1.17606 0.80011 0.80568 0.79941 1.90910 1.56658 1.30321 1.70524 1.86310 1.42892 1.58252 1.40125 1.22455 0.96951 0.90806 0.81048 1.22462 0.98443 1.03144 0.99535 1.21871 0.93679 1.02487 1.00995 1.22490 1.02477 0.95512 1.03414 1.21783 0.88600 0.97597 0.89685 0.93806 0.93808 0.95219 0.93832 0.92710 0.92687 0.76437 0.91338 0.88816 0.91289 0.87120 0.91519 0.88998 0.88144 0.91587 0.89041 0.92269 0.91309 0.87914 0.90838 0.92468 0.88894 0.92213 0.93157 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.52 71.98 0.61 -4.92 16 2 C -0.11 -5.61 5.49 30.60 0.17 -5.44 16 3 C 0.28 14.01 2.11 44.25 0.09 14.11 16 4 H 0.01 0.34 7.55 -2.39 -0.02 0.33 16 5 C -0.55 -28.48 8.67 25.60 0.22 -28.25 16 6 H 0.07 3.51 7.73 -2.91 -0.02 3.49 16 7 C 0.02 0.93 5.19 84.65 0.44 1.37 16 8 N -0.92 -52.81 12.00 21.45 0.26 -52.55 16 9 Si 0.96 42.01 29.54 68.60 2.03 44.03 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 13 N -0.70 -27.89 4.91 -446.09 -2.19 -30.08 16 14 C 0.52 19.08 4.97 87.66 0.44 19.51 16 15 O -0.58 -26.04 12.90 -3.03 -0.04 -26.08 16 16 C -0.08 -2.18 0.75 -51.74 -0.04 -2.22 16 17 C -0.13 -2.57 8.35 71.98 0.60 -1.97 16 18 C -0.10 -2.34 5.63 31.99 0.18 -2.16 16 19 C 0.11 1.99 6.61 86.86 0.57 2.56 16 20 N -0.60 -14.77 3.33 -942.09 -3.13 -17.91 16 21 C 0.66 18.17 7.93 129.79 1.03 19.20 16 22 O -0.59 -19.35 12.21 19.80 0.24 -19.11 16 23 O -0.36 -8.26 9.42 -55.44 -0.52 -8.79 16 24 C 0.12 2.23 1.13 -10.80 -0.01 2.22 16 25 C -0.18 -3.13 8.37 71.98 0.60 -2.53 16 26 C -0.13 -1.45 8.85 71.98 0.64 -0.82 16 27 C -0.18 -3.50 8.37 71.98 0.60 -2.90 16 28 C 0.15 3.82 5.98 86.73 0.52 4.34 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 31 H 0.03 1.43 7.87 -2.38 -0.02 1.42 16 32 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 2.99 6.64 -2.39 -0.02 2.97 16 34 H 0.26 14.47 8.31 -92.72 -0.77 13.70 16 35 H 0.40 13.73 8.13 -92.71 -0.75 12.98 16 36 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.09 1.34 7.52 -2.39 -0.02 1.32 16 38 H 0.07 1.36 7.77 -2.39 -0.02 1.34 16 39 H 0.11 2.05 8.04 -2.39 -0.02 2.03 16 40 H 0.07 1.86 7.49 -2.38 -0.02 1.84 16 41 H 0.09 1.53 8.04 -2.39 -0.02 1.51 16 42 H 0.10 1.32 7.77 -2.39 -0.02 1.30 16 43 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 47 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 50 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.05 1.60 7.81 -2.39 -0.02 1.58 16 53 H 0.09 2.17 7.84 -2.38 -0.02 2.15 16 Total: -1.00 -70.28 409.90 3.45 -66.83 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.14 Total: 31.54 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.67 Total: 12.10 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.07 Total: -100.54 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.32 Total: -53.97 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -70.28 3.45 -66.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183907337.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.684 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds