Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 C 1.50703 * 109.46912 * 185.00257 * 3 2 1 6 6 H 1.08003 * 119.99742 * 240.00283 * 5 3 2 7 7 C 1.37873 * 119.99873 * 60.00145 * 5 3 2 8 8 N 1.31509 * 120.00433 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47197 * 89.99842 * 9 7 5 11 11 H 1.48495 * 109.47693 * 210.00055 * 9 7 5 12 12 H 1.48508 * 109.46868 * 330.00146 * 9 7 5 13 13 N 1.46500 * 109.47023 * 65.00406 * 3 2 1 14 14 C 1.34779 * 119.99793 * 274.99565 * 13 3 2 15 15 O 1.21279 * 120.00185 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99614 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.50263 * 299.93466 * 16 14 13 18 18 C 1.53044 * 109.49319 * 179.83922 * 16 14 13 19 19 C 1.53046 * 109.53584 * 178.68523 * 18 16 14 20 20 C 1.53191 * 109.31001 * 61.36602 * 19 18 16 21 21 N 1.46924 * 108.77723 * 305.36001 * 20 19 18 22 22 C 1.34773 * 120.63682 * 233.58897 * 21 20 19 23 23 O 1.21510 * 120.00280 * 180.02562 * 22 21 20 24 24 O 1.34638 * 119.99890 * 0.02562 * 22 21 20 25 25 C 1.45199 * 117.00198 * 179.97438 * 24 22 21 26 26 C 1.53005 * 109.47079 * 60.00320 * 25 24 22 27 27 C 1.53003 * 109.46961 * 179.97438 * 25 24 22 28 28 C 1.52995 * 109.46970 * 299.99835 * 25 24 22 29 29 C 1.46929 * 118.73391 * 53.61562 * 21 20 19 30 30 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 31 31 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 32 32 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 34 34 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 35 35 H 0.97001 * 120.00323 * 179.97438 * 8 7 5 36 36 H 0.97004 * 120.00223 * 94.99655 * 13 3 2 37 37 H 1.08994 * 109.45781 * 298.70391 * 18 16 14 38 38 H 1.08994 * 109.45884 * 58.66965 * 18 16 14 39 39 H 1.09002 * 109.49617 * 301.41657 * 19 18 16 40 40 H 1.08998 * 109.52214 * 181.33142 * 19 18 16 41 41 H 1.09003 * 109.58554 * 185.57812 * 20 19 18 42 42 H 1.08992 * 109.70562 * 65.22350 * 20 19 18 43 43 H 1.08990 * 109.47304 * 59.99533 * 26 25 24 44 44 H 1.08996 * 109.46706 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.46731 * 299.99491 * 26 25 24 46 46 H 1.09003 * 109.46683 * 60.00465 * 27 25 24 47 47 H 1.09002 * 109.46612 * 179.97438 * 27 25 24 48 48 H 1.08998 * 109.47540 * 299.99785 * 27 25 24 49 49 H 1.09001 * 109.46747 * 60.00476 * 28 25 24 50 50 H 1.09004 * 109.46926 * 180.02562 * 28 25 24 51 51 H 1.08995 * 109.47421 * 299.99592 * 28 25 24 52 52 H 1.09004 * 109.58395 * 186.59860 * 29 21 20 53 53 H 1.08993 * 109.70546 * 66.24873 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3820 10 1 6.5549 -0.3501 -0.7604 11 1 6.3829 0.9226 -2.8174 12 1 6.5569 2.0740 -0.6903 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6319 0.4345 16 6 0.0363 3.3375 2.6550 17 1 0.0661 2.6129 3.4687 18 6 -1.3815 3.8978 2.5207 19 6 -1.7999 4.5530 3.8390 20 6 -0.8494 5.7127 4.1524 21 7 0.5309 5.2094 4.1402 22 6 1.3445 5.4102 5.1957 23 8 2.4842 4.9893 5.1731 24 8 0.8945 6.0771 6.2753 25 6 1.8254 6.2557 7.3752 26 6 3.0464 7.0385 6.8880 27 6 1.1401 7.0305 8.5026 28 6 2.2707 4.8869 7.8938 29 6 1.0076 4.4835 2.9550 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8292 -0.0611 -2.9499 36 1 2.2720 2.1231 1.9979 37 1 -1.4045 4.6401 1.7229 38 1 -2.0710 3.0879 2.2829 39 1 -1.7532 3.8172 4.6418 40 1 -2.8184 4.9311 3.7507 41 1 -1.0812 6.1194 5.1368 42 1 -0.9606 6.4928 3.3994 43 1 2.7291 8.0135 6.5185 44 1 3.7454 7.1721 7.7136 45 1 3.5347 6.4868 6.0847 46 1 0.2701 6.4731 8.8498 47 1 1.8389 7.1641 9.3285 48 1 0.8232 8.0057 8.1329 49 1 2.7590 4.3353 7.0904 50 1 2.9692 5.0209 8.7198 51 1 1.4009 4.3293 8.2409 52 1 2.0011 4.0792 3.1493 53 1 1.0491 5.1603 2.1016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183920705.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -152.966383 kcal Electronic energy + Delta-G solvation = -31664.066999 eV Core-core repulsion = 27534.471620 eV Total energy + Delta-G solvation = -4129.595379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02847 -41.02242 -39.23515 -37.60183 -36.87324 -35.18167 -34.34276 -33.68840 -33.07936 -31.87490 -28.93425 -28.33039 -28.24936 -26.69451 -25.69944 -24.66847 -23.17886 -22.36175 -21.39951 -20.87533 -20.20805 -19.25282 -18.60283 -17.71013 -17.40782 -17.22545 -17.12386 -16.58174 -16.27800 -15.97826 -15.46399 -15.37807 -15.35481 -14.82412 -14.73118 -14.54654 -14.39506 -14.28716 -13.75395 -13.73430 -13.37759 -13.25313 -13.15627 -13.07707 -12.92781 -12.86594 -12.82394 -12.69028 -12.51666 -12.45416 -12.24759 -12.18173 -12.11803 -11.95640 -11.83649 -11.61824 -11.58349 -11.35960 -11.05459 -11.04332 -10.63862 -10.49173 -9.83573 -9.61173 -8.16711 -6.33351 1.03418 1.42952 1.43621 1.54001 1.71127 1.86945 2.35191 2.61709 2.83174 3.12552 3.63621 3.75675 3.79300 3.80623 3.84572 3.98774 4.02906 4.16346 4.29666 4.38976 4.49828 4.51361 4.58073 4.60440 4.64912 4.69035 4.75090 4.76015 4.80051 4.80304 4.87430 4.92466 4.93103 5.06152 5.07538 5.15810 5.19115 5.26654 5.32216 5.34183 5.39984 5.41806 5.44602 5.50106 5.56584 5.62939 5.80006 5.92319 6.17672 6.29294 6.74740 6.98044 7.25672 7.33348 7.56507 8.88398 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003026 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.620747 B = 9251.693580 C =10950.180337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.706 5.706 14 C 0.507 3.493 15 O -0.577 6.577 16 C -0.109 4.109 17 H 0.106 0.894 18 C -0.096 4.096 19 C -0.122 4.122 20 C 0.107 3.893 21 N -0.591 5.591 22 C 0.649 3.351 23 O -0.593 6.593 24 O -0.360 6.360 25 C 0.125 3.875 26 C -0.181 4.181 27 C -0.133 4.133 28 C -0.181 4.181 29 C 0.145 3.855 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.399 0.601 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.089 0.911 51 H 0.063 0.937 52 H 0.088 0.912 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 13.396 22.433 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.355 5.355 14 C 0.293 3.707 15 O -0.458 6.458 16 C -0.131 4.131 17 H 0.124 0.876 18 C -0.134 4.134 19 C -0.160 4.160 20 C -0.014 4.014 21 N -0.331 5.331 22 C 0.404 3.596 23 O -0.484 6.484 24 O -0.274 6.274 25 C 0.089 3.911 26 C -0.238 4.238 27 C -0.190 4.190 28 C -0.238 4.238 29 C 0.022 3.978 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.108 0.892 51 H 0.082 0.918 52 H 0.106 0.894 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.377 13.193 21.669 26.717 hybrid contribution 1.475 -0.450 -0.543 1.635 sum -6.902 12.743 21.126 25.619 Atomic orbital electron populations 1.21666 0.96748 0.99151 1.00352 1.21790 0.93959 0.99183 1.01162 1.18355 0.93430 0.89207 0.81442 0.98024 1.21573 0.91665 1.38845 1.06543 0.91543 1.25703 1.03024 0.94430 0.95057 1.70032 1.36905 1.38361 1.09848 0.85445 0.79538 0.78769 0.77196 1.19749 1.21024 1.19232 1.46380 1.15651 1.55946 1.17487 1.20823 0.81670 0.78554 0.89653 1.90656 1.52116 1.61118 1.41881 1.21667 0.98411 0.97860 0.95140 0.87569 1.21320 0.92852 1.00721 0.98526 1.21912 1.00238 0.97568 0.96314 1.22005 0.78239 0.96662 1.04492 1.46977 1.13964 1.57761 1.14415 1.18111 0.83210 0.77514 0.80732 1.90914 1.19191 1.56104 1.82217 1.86288 1.45698 1.70113 1.25314 1.22415 0.88462 0.96547 0.83725 1.22480 0.97902 1.00118 1.03336 1.21867 1.01816 0.99990 0.95343 1.22476 1.02561 0.96225 1.02535 1.21347 0.97635 0.92676 0.86118 0.93670 0.95349 0.93661 0.91016 0.94372 0.92585 0.76651 0.91683 0.91437 0.91118 0.87467 0.87525 0.89965 0.91860 0.89206 0.92385 0.90952 0.88170 0.91011 0.92315 0.89246 0.91779 0.89376 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.89 16 3 C 0.28 14.38 2.24 44.25 0.10 14.48 16 4 H 0.00 0.11 7.58 -2.39 -0.02 0.10 16 5 C -0.55 -29.53 8.73 25.60 0.22 -29.31 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.99 5.29 84.65 0.45 1.43 16 8 N -0.91 -52.58 11.29 21.44 0.24 -52.34 16 9 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.71 -29.37 4.93 -446.09 -2.20 -31.56 16 14 C 0.51 19.33 5.73 87.66 0.50 19.83 16 15 O -0.58 -26.14 13.12 -3.03 -0.04 -26.18 16 16 C -0.11 -2.98 2.68 -11.46 -0.03 -3.01 16 17 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 18 C -0.10 -2.23 4.46 30.62 0.14 -2.09 16 19 C -0.12 -1.89 6.08 30.67 0.19 -1.70 16 20 C 0.11 1.74 6.45 86.36 0.56 2.29 16 21 N -0.59 -13.67 2.97 -949.27 -2.82 -16.49 16 22 C 0.65 16.89 7.74 129.79 1.00 17.90 16 23 O -0.59 -18.88 11.29 19.81 0.22 -18.66 16 24 O -0.36 -7.64 8.53 -55.48 -0.47 -8.11 16 25 C 0.12 2.17 1.13 -10.79 -0.01 2.16 16 26 C -0.18 -3.31 8.37 71.98 0.60 -2.71 16 27 C -0.13 -1.35 8.85 71.98 0.64 -0.72 16 28 C -0.18 -3.27 8.37 71.98 0.60 -2.67 16 29 C 0.14 3.89 5.57 86.36 0.48 4.37 16 30 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 31 H 0.03 1.36 7.85 -2.39 -0.02 1.34 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.40 14.91 8.08 -92.71 -0.75 14.16 16 37 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 38 H 0.07 1.69 8.06 -2.39 -0.02 1.68 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.45 6.93 -2.39 -0.02 1.43 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.46 5.88 -2.39 -0.01 1.45 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.06 1.46 5.88 -2.39 -0.01 1.45 16 50 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 51 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.09 2.65 6.60 -2.39 -0.02 2.63 16 53 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -68.98 405.25 3.32 -65.66 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.14 Total: 33.11 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.22 Total: 9.52 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.78 Total: -100.39 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.29 Total: -52.95 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.98 3.32 -65.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183920705.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.305 kcal (2) G-P(sol) polarization free energy of solvation -68.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds