Wall clock time and date at job start Sat Apr 11 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46937 * 2 1 4 4 H 1.08994 * 109.47150 * 304.99712 * 3 2 1 5 5 C 1.50707 * 109.46712 * 185.00127 * 3 2 1 6 6 H 1.07999 * 119.99774 * 239.99606 * 5 3 2 7 7 C 1.37874 * 119.99922 * 60.00289 * 5 3 2 8 8 N 1.31518 * 120.00167 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00062 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46727 * 59.99961 * 9 7 5 11 11 H 1.48497 * 109.47093 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47380 * 300.00131 * 9 7 5 13 13 N 1.46500 * 109.47429 * 65.00594 * 3 2 1 14 14 C 1.34778 * 119.99476 * 274.99972 * 13 3 2 15 15 O 1.21274 * 120.00254 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99535 * 180.02562 * 14 13 3 17 17 C 1.53044 * 109.45870 * 179.97438 * 16 14 13 18 18 C 1.53191 * 109.31440 * 178.61110 * 17 16 14 19 19 N 1.46926 * 108.89109 * 54.56430 * 18 17 16 20 20 C 1.34780 * 120.63278 * 126.46534 * 19 18 17 21 21 O 1.21515 * 119.99143 * 0.02562 * 20 19 18 22 22 O 1.34631 * 120.00648 * 180.02562 * 20 19 18 23 23 C 1.45192 * 117.00317 * 180.02562 * 22 20 19 24 24 C 1.53004 * 109.47078 * 59.99834 * 23 22 20 25 25 C 1.53000 * 109.47392 * 179.97438 * 23 22 20 26 26 C 1.52997 * 109.47384 * 300.00042 * 23 22 20 27 27 C 1.46957 * 118.71783 * 306.64359 * 19 18 17 28 28 C 1.53040 * 109.46186 * 59.92910 * 16 14 13 29 29 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46972 * 299.99644 * 1 2 3 31 31 H 1.09000 * 109.47191 * 59.99528 * 1 2 3 32 32 H 1.08999 * 109.46839 * 239.99879 * 2 1 3 33 33 H 1.09003 * 109.47279 * 119.99952 * 2 1 3 34 34 H 0.97002 * 119.99914 * 180.02562 * 8 7 5 35 35 H 0.96995 * 120.00088 * 94.99779 * 13 3 2 36 36 H 1.08994 * 109.45134 * 299.96206 * 16 14 13 37 37 H 1.09003 * 109.49852 * 58.66374 * 17 16 14 38 38 H 1.08997 * 109.49691 * 298.56808 * 17 16 14 39 39 H 1.09002 * 109.58786 * 174.42474 * 18 17 16 40 40 H 1.08996 * 109.58870 * 294.70753 * 18 17 16 41 41 H 1.09000 * 109.46679 * 60.00246 * 24 23 22 42 42 H 1.09006 * 109.46908 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47307 * 299.99756 * 24 23 22 44 44 H 1.09010 * 109.46813 * 59.99803 * 25 23 22 45 45 H 1.09000 * 109.47401 * 179.97438 * 25 23 22 46 46 H 1.09000 * 109.47529 * 300.00466 * 25 23 22 47 47 H 1.09004 * 109.47358 * 59.99733 * 26 23 22 48 48 H 1.09000 * 109.47605 * 180.02562 * 26 23 22 49 49 H 1.09005 * 109.47153 * 300.00042 * 26 23 22 50 50 H 1.09001 * 109.46843 * 293.57352 * 27 19 18 51 51 H 1.08997 * 109.71602 * 173.28846 * 27 19 18 52 52 H 1.08995 * 109.49643 * 301.33482 * 28 16 14 53 53 H 1.08994 * 109.49843 * 61.40241 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3366 -2.1730 9 14 6.0048 0.8812 -1.3820 10 1 6.5974 0.1471 -0.2351 11 1 6.3976 0.2166 -2.6505 12 1 6.4995 2.2813 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3392 2.6326 0.4343 16 6 0.0368 3.3386 2.6545 17 6 -1.3824 3.8954 2.5206 18 6 -1.7969 4.5495 3.8424 19 7 -0.7885 5.5513 4.2142 20 6 -1.1496 6.8210 4.4861 21 8 -2.3188 7.1463 4.4254 22 8 -0.2149 7.7289 4.8251 23 6 -0.6762 9.0768 5.1050 24 6 -1.6624 9.0459 6.2743 25 6 0.5191 9.9595 5.4698 26 6 -1.3714 9.6455 3.8664 27 6 0.6217 5.1429 4.2800 28 6 1.0088 4.4825 2.9530 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0618 -2.9496 35 1 2.2720 2.1231 1.9977 36 1 0.0678 2.6142 3.4683 37 1 -2.0709 3.0839 2.2847 38 1 -1.4081 4.6381 1.7233 39 1 -2.7661 5.0337 3.7224 40 1 -1.8620 3.7899 4.6214 41 1 -1.1671 8.6409 7.1567 42 1 -2.0084 10.0580 6.4847 43 1 -2.5141 8.4171 6.0148 44 1 1.2221 9.9815 4.6370 45 1 0.1729 10.9715 5.6795 46 1 1.0141 9.5542 6.3523 47 1 -2.2231 9.0166 3.6068 48 1 -1.7173 10.6576 4.0763 49 1 -0.6688 9.6675 3.0333 50 1 0.7564 4.4321 5.0952 51 1 1.2501 6.0172 4.4500 52 1 2.0226 4.0889 3.0250 53 1 0.9606 5.2193 2.1514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183934270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:28 Heat of formation + Delta-G solvation = -154.481127 kcal Electronic energy + Delta-G solvation = -31279.384195 eV Core-core repulsion = 27149.723132 eV Total energy + Delta-G solvation = -4129.661063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97248 -40.99189 -39.23084 -37.56755 -36.83880 -35.17544 -34.36000 -33.79577 -32.59627 -31.98141 -29.05199 -28.34135 -28.26334 -27.14928 -25.05038 -24.37691 -23.58790 -22.24441 -21.39612 -20.88515 -20.19864 -19.19120 -18.68181 -17.67887 -17.37925 -17.21753 -17.16610 -16.33572 -16.26763 -15.94062 -15.51190 -15.45673 -15.18519 -14.83524 -14.72824 -14.56619 -14.32448 -14.20150 -13.77635 -13.47791 -13.32395 -13.23025 -13.15958 -13.06548 -12.88085 -12.87756 -12.83339 -12.81892 -12.63460 -12.44019 -12.32258 -12.19754 -12.16535 -12.04334 -11.71559 -11.62718 -11.54692 -11.36117 -11.03195 -11.02241 -10.57718 -10.43131 -9.77479 -9.55688 -8.13894 -6.31127 1.14585 1.45890 1.47359 1.54971 1.76083 1.93017 2.38067 2.68971 2.85214 3.15590 3.66093 3.76480 3.79092 3.82548 3.89078 3.97740 4.03621 4.27390 4.32625 4.40903 4.51379 4.55150 4.59862 4.63811 4.67901 4.71505 4.72155 4.78997 4.79905 4.81822 4.84931 4.86837 4.90581 5.01335 5.09780 5.13594 5.15466 5.28171 5.30313 5.32064 5.35105 5.46851 5.47445 5.53047 5.59171 5.67938 5.83163 5.97381 6.20526 6.31779 6.78015 7.07132 7.28132 7.36755 7.67664 8.91037 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.002457 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.868100 B =11392.620270 C =12525.571136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.007 1.007 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.591 6.591 16 C -0.097 4.097 17 C -0.106 4.106 18 C 0.135 3.865 19 N -0.595 5.595 20 C 0.647 3.353 21 O -0.596 6.596 22 O -0.365 6.365 23 C 0.124 3.876 24 C -0.177 4.177 25 C -0.135 4.135 26 C -0.181 4.181 27 C 0.119 3.881 28 C -0.120 4.120 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.404 0.596 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.091 0.909 49 H 0.055 0.945 50 H 0.104 0.896 51 H 0.100 0.900 52 H 0.101 0.899 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 14.518 20.653 25.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.011 0.989 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.352 5.352 14 C 0.287 3.713 15 O -0.473 6.473 16 C -0.118 4.118 17 C -0.145 4.145 18 C 0.014 3.986 19 N -0.336 5.336 20 C 0.403 3.597 21 O -0.487 6.487 22 O -0.280 6.280 23 C 0.088 3.912 24 C -0.234 4.234 25 C -0.192 4.192 26 C -0.238 4.238 27 C -0.003 4.003 28 C -0.159 4.159 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.147 0.853 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.109 0.891 49 H 0.074 0.926 50 H 0.122 0.878 51 H 0.118 0.882 52 H 0.119 0.881 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.816 14.578 19.819 25.281 hybrid contribution 0.884 -0.212 -0.840 1.238 sum -4.932 14.366 18.980 24.309 Atomic orbital electron populations 1.21670 0.97014 0.99027 1.00253 1.21778 0.93710 0.99274 1.01233 1.18309 0.93496 0.89097 0.81632 0.98927 1.21569 0.91514 1.38676 1.06586 0.90841 1.25773 1.03169 0.94525 0.95138 1.70053 1.37078 1.38469 1.09901 0.85461 0.79340 0.78415 0.77498 1.18770 1.21528 1.19681 1.46239 1.15685 1.55955 1.17329 1.21193 0.81617 0.78222 0.90230 1.90658 1.52621 1.61322 1.42674 1.21342 0.96631 0.98539 0.95260 1.21638 0.95571 1.00285 0.96967 1.21679 0.91079 0.89777 0.96065 1.47177 1.10151 1.06200 1.70058 1.18174 0.83100 0.82036 0.76423 1.90871 1.18976 1.79586 1.59278 1.86296 1.38755 1.21593 1.81356 1.22399 0.96438 0.76810 0.95577 1.22447 0.99652 1.04293 0.96991 1.21878 0.95703 0.98847 1.02802 1.22479 1.01402 1.02782 0.97148 1.21871 0.79596 1.01564 0.97237 1.21895 0.99666 0.96409 0.97929 0.93728 0.93385 0.95949 0.91327 0.93882 0.92741 0.76111 0.85344 0.89889 0.93758 0.89550 0.87938 0.91658 0.89231 0.92005 0.91599 0.88060 0.90829 0.92147 0.89064 0.92598 0.87789 0.88184 0.88079 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.52 71.98 0.61 -4.80 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.68 16 3 C 0.28 13.89 2.24 44.25 0.10 13.99 16 4 H -0.01 -0.43 7.58 -2.39 -0.02 -0.45 16 5 C -0.55 -28.04 8.73 25.60 0.22 -27.82 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.74 5.29 84.65 0.45 1.18 16 8 N -0.92 -52.21 11.29 21.45 0.24 -51.97 16 9 Si 0.97 41.38 29.54 68.60 2.03 43.41 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 N -0.70 -26.99 4.91 -446.10 -2.19 -29.18 16 14 C 0.50 18.26 5.72 87.66 0.50 18.76 16 15 O -0.59 -27.21 13.12 -3.01 -0.04 -27.25 16 16 C -0.10 -2.33 2.49 -11.51 -0.03 -2.36 16 17 C -0.11 -2.64 4.65 30.67 0.14 -2.50 16 18 C 0.13 2.72 6.43 86.36 0.56 3.27 16 19 N -0.60 -12.60 2.98 -949.16 -2.83 -15.43 16 20 C 0.65 16.16 7.74 129.79 1.00 17.17 16 21 O -0.60 -17.53 11.29 19.79 0.22 -17.30 16 22 O -0.37 -7.99 8.53 -55.41 -0.47 -8.47 16 23 C 0.12 2.18 1.13 -10.79 -0.01 2.17 16 24 C -0.18 -2.90 8.37 71.98 0.60 -2.30 16 25 C -0.14 -1.54 8.85 71.98 0.64 -0.90 16 26 C -0.18 -3.41 8.37 71.98 0.60 -2.81 16 27 C 0.12 1.93 6.44 86.36 0.56 2.49 16 28 C -0.12 -2.48 5.27 30.67 0.16 -2.32 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 2.00 5.65 -2.39 -0.01 1.99 16 31 H 0.02 1.07 7.85 -2.39 -0.02 1.05 16 32 H 0.07 3.76 5.95 -2.39 -0.01 3.74 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.40 12.68 7.94 -92.71 -0.74 11.95 16 36 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 38 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 39 H 0.09 1.97 7.00 -2.39 -0.02 1.96 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 44 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 48 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 50 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.10 1.56 6.94 -2.39 -0.02 1.54 16 52 H 0.10 1.80 7.52 -2.39 -0.02 1.78 16 53 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.20 404.94 3.39 -67.81 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.16 Total: 30.84 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.27 Total: 7.55 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -4.77 Total: -96.58 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.29 Total: -53.02 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -71.20 3.39 -67.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183934270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.672 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds