Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46716 * 120.00463 * 9 7 5 12 12 H 1.48500 * 109.46999 * 240.00161 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 N 1.46498 * 109.46996 * 180.02562 * 16 14 13 18 18 C 1.46499 * 120.00540 * 270.00021 * 17 16 14 19 19 C 1.52997 * 109.46859 * 89.99964 * 18 17 16 20 20 C 1.53005 * 117.50156 * 243.62155 * 19 18 17 21 21 C 1.52993 * 60.00309 * 252.51276 * 20 19 18 22 22 C 1.34776 * 120.00135 * 90.00477 * 17 16 14 23 23 O 1.21519 * 119.99759 * 359.97438 * 22 17 16 24 24 O 1.34641 * 120.00610 * 179.97438 * 22 17 16 25 25 C 1.45193 * 117.00093 * 180.02562 * 24 22 17 26 26 C 1.52995 * 109.47241 * 60.00044 * 25 24 22 27 27 C 1.53001 * 109.47184 * 180.02562 * 25 24 22 28 28 C 1.53002 * 109.47474 * 300.00001 * 25 24 22 29 29 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 31 31 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 32 32 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 33 33 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 34 34 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 35 35 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 36 36 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 37 37 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 38 38 H 1.08999 * 109.47510 * 210.00601 * 18 17 16 39 39 H 1.09003 * 109.46657 * 330.00736 * 18 17 16 40 40 H 1.09001 * 115.55143 * 29.33700 * 19 18 17 41 41 H 1.09000 * 117.49780 * 0.02562 * 20 19 18 42 42 H 1.09006 * 117.49376 * 145.02059 * 20 19 18 43 43 H 1.08999 * 117.50350 * 252.50918 * 21 20 19 44 44 H 1.09000 * 117.49982 * 107.48766 * 21 20 19 45 45 H 1.09003 * 109.47269 * 60.00408 * 26 25 24 46 46 H 1.09008 * 109.47124 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.47639 * 300.00114 * 26 25 24 48 48 H 1.09002 * 109.47360 * 59.99575 * 27 25 24 49 49 H 1.08999 * 109.47662 * 180.02562 * 27 25 24 50 50 H 1.08999 * 109.47028 * 300.00217 * 27 25 24 51 51 H 1.09002 * 109.46713 * 59.99648 * 28 25 24 52 52 H 1.08994 * 109.47797 * 180.02562 * 28 25 24 53 53 H 1.09004 * 109.47230 * 300.00834 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5465 -0.1943 11 1 6.4970 -0.5173 -1.4630 12 1 6.3989 1.6169 -2.6102 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 7 -1.3227 3.8698 2.5271 18 6 -1.5321 5.2337 2.0350 19 6 -1.6730 5.2102 0.5117 20 6 -0.6079 5.9417 -0.3077 21 6 -2.0159 6.5278 -0.1865 22 6 -2.3804 3.1047 2.8624 23 8 -2.2068 1.9733 3.2702 24 8 -3.6294 3.5939 2.7455 25 6 -4.7201 2.7142 3.1253 26 6 -4.5691 2.3200 4.5958 27 6 -6.0529 3.4385 2.9253 28 6 -4.6881 1.4566 2.2543 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0603 -2.9502 35 1 2.2719 2.1233 1.9977 36 1 0.0672 2.6130 3.4685 37 1 0.7275 4.1530 2.8679 38 1 -2.4396 5.6444 2.4776 39 1 -0.6799 5.8545 2.3115 40 1 -2.0906 4.2949 0.0923 41 1 0.1935 6.4393 0.2384 42 1 -0.3243 5.5073 -1.2665 43 1 -2.6587 6.4793 -1.0654 44 1 -2.1410 7.4113 0.4394 45 1 -4.5920 3.2158 5.2164 46 1 -5.3883 1.6598 4.8811 47 1 -3.6196 1.8038 4.7380 48 1 -6.1603 3.7191 1.8775 49 1 -6.8718 2.7783 3.2108 50 1 -6.0760 4.3346 3.5454 51 1 -3.7386 0.9405 2.3964 52 1 -5.5072 0.7963 2.5391 53 1 -4.7956 1.7374 1.2066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183962120.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = -112.592392 kcal Electronic energy + Delta-G solvation = -32394.774475 eV Core-core repulsion = 28266.929844 eV Total energy + Delta-G solvation = -4127.844631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94833 -40.57013 -38.89560 -37.94866 -36.84972 -35.91782 -34.78944 -34.24025 -32.86870 -30.05186 -28.62273 -28.34970 -28.24633 -27.48520 -25.01851 -23.42963 -23.13956 -21.96731 -21.78569 -21.05162 -20.27998 -19.00593 -18.91142 -17.89679 -17.61926 -17.18226 -16.81488 -16.65475 -16.28908 -16.03962 -15.66596 -15.43334 -15.15881 -15.02645 -14.60505 -14.55524 -14.28761 -13.98807 -13.66247 -13.54352 -13.29977 -13.21650 -13.14925 -12.92138 -12.85908 -12.81930 -12.77713 -12.73296 -12.62342 -12.40715 -12.33290 -12.25480 -12.14852 -12.05812 -11.60669 -11.34748 -11.33158 -11.03835 -11.02646 -10.80345 -10.73323 -10.52786 -9.72284 -9.52457 -8.14528 -6.31513 1.07718 1.43917 1.45239 1.56902 1.80608 1.98399 2.38325 2.69813 2.85410 3.04897 3.15141 3.78371 3.81950 3.85319 3.97734 4.00834 4.10357 4.14216 4.18452 4.38890 4.43748 4.45846 4.53547 4.55615 4.56173 4.63056 4.71843 4.75372 4.77910 4.80611 4.82036 4.87025 4.90738 5.06581 5.06760 5.12879 5.21741 5.28055 5.29630 5.30588 5.37216 5.42943 5.47116 5.53258 5.57817 5.68466 5.80482 5.97617 6.18706 6.30029 6.78329 7.07842 7.31658 7.36681 7.70544 8.90859 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.003262 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.207229 B = 8580.741900 C = 9508.288166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 C 0.287 3.713 4 H -0.004 1.004 5 C -0.542 4.542 6 H 0.074 0.926 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.708 5.708 14 C 0.479 3.521 15 O -0.566 6.566 16 C 0.117 3.883 17 N -0.573 5.573 18 C 0.151 3.849 19 C -0.165 4.165 20 C -0.183 4.183 21 C -0.155 4.155 22 C 0.653 3.347 23 O -0.592 6.592 24 O -0.360 6.360 25 C 0.125 3.875 26 C -0.175 4.175 27 C -0.132 4.132 28 C -0.180 4.180 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.021 0.979 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.117 0.883 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.123 0.877 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.101 0.899 50 H 0.077 0.923 51 H 0.053 0.947 52 H 0.092 0.908 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 12.045 14.232 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.158 4.158 3 C 0.183 3.817 4 H 0.014 0.986 5 C -0.581 4.581 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.794 3.206 10 H -0.181 1.181 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.359 5.359 14 C 0.265 3.735 15 O -0.445 6.445 16 C -0.009 4.009 17 N -0.310 5.310 18 C 0.029 3.971 19 C -0.184 4.184 20 C -0.220 4.220 21 C -0.192 4.192 22 C 0.409 3.591 23 O -0.483 6.483 24 O -0.274 6.274 25 C 0.088 3.912 26 C -0.233 4.233 27 C -0.189 4.189 28 C -0.237 4.237 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.237 0.763 36 H 0.134 0.866 37 H 0.168 0.832 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.120 0.880 50 H 0.096 0.904 51 H 0.072 0.928 52 H 0.111 0.889 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.974 11.581 13.543 23.275 hybrid contribution 1.333 -0.830 -0.812 1.767 sum -13.642 10.751 12.731 21.535 Atomic orbital electron populations 1.21594 0.97390 0.98402 0.99866 1.21781 0.93206 0.99910 1.00911 1.18215 0.93400 0.88544 0.81573 0.98575 1.21631 0.91483 1.38472 1.06484 0.90807 1.25784 1.03213 0.94513 0.95148 1.70073 1.36937 1.38656 1.09911 0.85342 0.79315 0.77686 0.78262 1.18144 1.20785 1.21114 1.46192 1.15756 1.56467 1.17452 1.21600 0.81911 0.79171 0.90848 1.90662 1.51864 1.60038 1.41941 1.21478 0.82484 1.01792 0.95125 1.46363 1.03106 1.15128 1.66391 1.21391 1.04436 0.80679 0.90588 1.22562 1.04644 0.96012 0.95213 1.22899 0.93402 1.04358 1.01376 1.23013 0.97178 0.96429 1.02576 1.18135 0.81628 0.82696 0.76655 1.90886 1.85901 1.18950 1.52581 1.86308 1.13533 1.46701 1.80907 1.22390 0.84525 0.89078 0.95178 1.22439 1.04120 1.02864 0.93833 1.21854 0.92114 1.01620 1.03316 1.22458 1.03773 0.98169 0.99328 0.94596 0.94061 0.95949 0.91258 0.94451 0.92799 0.76282 0.86554 0.83224 0.87812 0.87255 0.91252 0.87469 0.92260 0.89394 0.85859 0.91121 0.89221 0.92196 0.91896 0.88003 0.90364 0.92830 0.88940 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.02 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.95 16 3 C 0.29 14.72 2.24 44.25 0.10 14.82 16 4 H 0.00 -0.22 7.58 -2.38 -0.02 -0.24 16 5 C -0.54 -28.54 8.73 25.60 0.22 -28.32 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 7 C 0.01 0.71 5.29 84.65 0.45 1.16 16 8 N -0.92 -53.18 11.29 21.45 0.24 -52.93 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 10 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.71 -28.61 5.02 -446.08 -2.24 -30.85 16 14 C 0.48 18.33 6.47 87.66 0.57 18.90 16 15 O -0.57 -26.21 11.54 -3.03 -0.04 -26.25 16 16 C 0.12 3.14 5.93 85.64 0.51 3.64 16 17 N -0.57 -15.73 2.02 -956.53 -1.94 -17.66 16 18 C 0.15 3.25 5.74 86.38 0.50 3.75 16 19 C -0.16 -4.51 4.85 -10.79 -0.05 -4.57 16 20 C -0.18 -4.95 10.18 30.59 0.31 -4.64 16 21 C -0.15 -3.28 10.25 30.59 0.31 -2.97 16 22 C 0.65 20.57 7.70 129.79 1.00 21.57 16 23 O -0.59 -21.69 11.46 19.78 0.23 -21.46 16 24 O -0.36 -9.84 8.71 -55.51 -0.48 -10.32 16 25 C 0.12 2.81 1.13 -10.79 -0.01 2.80 16 26 C -0.18 -3.56 8.37 71.98 0.60 -2.95 16 27 C -0.13 -1.97 8.85 71.98 0.64 -1.33 16 28 C -0.18 -4.71 8.37 71.98 0.60 -4.11 16 29 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 2.01 5.64 -2.38 -0.01 1.99 16 31 H 0.02 1.15 7.85 -2.39 -0.02 1.14 16 32 H 0.07 3.97 5.95 -2.39 -0.01 3.96 16 33 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.40 13.55 8.54 -92.71 -0.79 12.76 16 36 H 0.12 3.03 7.42 -2.39 -0.02 3.01 16 37 H 0.15 2.67 7.89 -2.39 -0.02 2.66 16 38 H 0.10 1.90 7.37 -2.39 -0.02 1.88 16 39 H 0.11 1.70 7.63 -2.39 -0.02 1.68 16 40 H 0.07 2.59 7.34 -2.39 -0.02 2.58 16 41 H 0.11 2.46 8.03 -2.39 -0.02 2.44 16 42 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.06 1.60 5.88 -2.39 -0.01 1.58 16 48 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.05 1.81 5.88 -2.39 -0.01 1.80 16 52 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 53 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.59 415.74 4.43 -69.16 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: 0.10 Total: 39.30 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 6.52 Total: 6.79 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -3.93 Total: -101.45 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -0.29 Total: -58.03 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -73.59 4.43 -69.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183962120.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.428 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds